web services for semantic applications in healthcare and life sciences
DESCRIPTION
BioPortal demo from ICBO 2009TRANSCRIPT
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Web Services for Semantic Applications in Healthcare and Life Sciences
Trish Whetzel
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RESTful Web Services
• Accessed via HTTP • Each unique URL is a representation of some
object • Operations include GET, POST, PUT, DELETE • Lightweight, easy to build
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Web Services
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Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
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Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
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BioPortal
• Ontology repository– Browse, search, and visualize ontologies– OBO format, OWL, Protégé frames
• Community evaluation– Reviews, Notes, Projects
• Text annotation• http://bioportal.bioontology.org
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Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
![Page 8: Web Services for Semantic Applications in Healthcare and Life Sciences](https://reader035.vdocuments.site/reader035/viewer/2022062708/55896982d8b42a99268b4635/html5/thumbnails/8.jpg)
Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
![Page 9: Web Services for Semantic Applications in Healthcare and Life Sciences](https://reader035.vdocuments.site/reader035/viewer/2022062708/55896982d8b42a99268b4635/html5/thumbnails/9.jpg)
Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
![Page 10: Web Services for Semantic Applications in Healthcare and Life Sciences](https://reader035.vdocuments.site/reader035/viewer/2022062708/55896982d8b42a99268b4635/html5/thumbnails/10.jpg)
Ontology Web Services
UI Browser Code Widget
Access Demo Demo
Search Demo Demo
Annotate Demo Demo
Hierarchy Demo
![Page 11: Web Services for Semantic Applications in Healthcare and Life Sciences](https://reader035.vdocuments.site/reader035/viewer/2022062708/55896982d8b42a99268b4635/html5/thumbnails/11.jpg)
Ontology term selection in the ISAcreator editor
A ‘user-friendly’ standalone Java application that assists the experimentalists to annotate the experimental metadata. Depending on the configuration (set via the ISAconfigurator tool), certain fields prompt a pop-up browser to search and select terms from ontologies that are accessed in real time via the Ontology Lookup Service and BioPortal.
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Automated recognition of ontology terms and database IDs before publication with manual curation by author Word 2007 add-in
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BioLit web resource: automated recognition of ontology terms and database IDs after publication http://biolit.ucsd.edu
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Web Interface FunctionalityWeb Interface Functionality• Functionality implemented:
– Integrates the ECG workflows into one unified workflow• Accepts ECG formats workflows processed and stores in WFDB• Allows for in-memory translation to HL7aECG
– Extends the capability of scrolling visualization of the ECG• Allows for annotation within the waveform, leveraging NCBO REST
Services real-time
• Prototype ECG Widget Demo