8/12/2019 Victoria Stodden ILAR Presentation

1/15

Wkprlou`egebety jfo ]ugbesaef

Xe`tlrej PtlookfOkpjrtdkft lh Ptjteste`s

@lbudgej [fevkrsety_ak Dessefn W9 Wkprlou`egebety ef j @ajfnefn Wkskjr`a Bjfos`j

Fjtelfjb J`jokdy lh P`ekf`ks^jsaefntlf, O@

Iufk ?, 7=:?

8/12/2019 Victoria Stodden ILAR Presentation

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_ak P`ekfte` Dktalo

_rjoetelfjbby twl grjf`aks lh tak s`ekfte` dktalo9Grjf`a : (okou`tevk)9 djtakdjte`s, hlrdjb blne`,Grjf`a 7 (kdpere`jb)9 stjteste`jb jfjbyses lh `lftrlbbko kxpkre

Djfy `bjed tak kdkrnkf`k lh fkw grjf`aks9Grjf`a 0,?< (`ldputjtelfjb)9 bjrnk s`jbk sedubjtelfs / ojtj

`ldputjtelfjb s`ekf`k.

8/12/2019 Victoria Stodden ILAR Presentation

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@rkoegebety @reses

8/12/2019 Victoria Stodden ILAR Presentation

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_ak [gequety lh Krrlr

_ak `kftrjb dltevjtelf hlr tak s`ekfte` dktalo es tl rllt lut

Okou`tevk grjf`a9 tak wkbb-okfko `lf`kpt lh tak prll

Kdpere`jb grjf`a9 tak dj`aefkry lh aypltakses tkstefn, j

stjteste`jb dktalos, stru`turko `lddufe`jtelf lh dktalprltl`lbs.

@bjed9 @ldputjtelf prkskfts lfby j pltkftejb taero/hlurta grj

s`ekfte` dktalo (Olflal, Ptlookf, kt jb. 7==5), ufteb tak okvk

`ldpjrjgbk stjfojros.

8/12/2019 Victoria Stodden ILAR Presentation

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]jrsefn Wkprlou`egebety

Kdpere`jb Wkprlou`egebety

@ldputjtelfjb Wkprlou`egebety

Ptjteste`jb Wkprlou`egebety X. Ptlookf, ED

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FJP Ojtj Pajrefn Wkplrt

Pajrefn ]ugbe`jtelf-Wkbjtko Ojtj jfo DjtkrWksplfsegebeteks lh Jutalrsaep ef tak Behk P`(7==0)

]ref`epbk :. Jutalrs salubo ef`buok ef take

pugbe`jtelfs tak ojtj, jbnlretads, lr ltakr eftajt es `kftrjb lr eftknrjb tl tak pugbe`jtelfwajtkvkr es fk`kssjry tl supplrt tak djilrtak pjpkr jfo wlubo kfjgbk lfk scebbko ef tvkrehy lr rkpbe`jtk tak `bjeds.

8/12/2019 Victoria Stodden ILAR Presentation

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ELD Kvlbutelf lh _rjfsbjtelfjb Bksslfs Bkjrfko jfo tak ]jta Hl

Djr a 70 7=:7, Efstetutk lh Dkoe`efk rkbkjsks rkplrt, Wk`lddkfos fkw stjfojros hlr lde`s-gjsko tksts,

ef`buoefn j xko vkrself lh tak slhtwjrk, kxprkssbyhlr vkre`jtelf purplsks.

8/12/2019 Victoria Stodden ILAR Presentation

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ELD Wkplrt9 Henurk P-:

_ak hubby spk`eheko ldputjtelfjb prl`kourks jrk bl`cko olwf eftak oes`lvkry pajsk jfo salubo rkdjef uf`ajfnko ef jbb sugskqukft okvkblpdkft stkps.

_ak hubby spk`eko `ldputjtelfjb prl`kourks jrk bl`cko olwf ef

pajsk jfo salubo rkdjef uf`ajfnko ef jbb sugskqukft okvkblpdkf

8/12/2019 Victoria Stodden ILAR Presentation

9/15

Pupplrtefn @ldputjtelfjb P`

Oesskdefjtelf ]bjthlrds9

lrclw _rj`cefn jfo Wkskjr`a Kfverlfdkfts9

Kdgkooko ]ugbesaefn9

http://www.runmycode.org/http://openscienceframework.org/project/EZcUj/wiki/homehttp://nanohub.org/http://thedatahub.org/http://mloss.org/software/http://www.reproducibility.org/wiki/Main_Pagehttp://www.ipol.im/http://researchcompendia.org/http://www.statistik.lmu.de/~leisch/Sweave/http://is.ieis.tue.nl/staff/pvgorp/share/http://yihui.name/knitr/http://vcr.stanford.edu/https://confluence.pegasus.isi.edu/display/pegasus/WorkflowGeneratorhttp://www.taverna.org.uk/http://packages.python.org/Sumatra/http://oware.cse.tamu.edu:8080/http://www.broadinstitute.org/cancer/software/genepattern/https://main.g2.bx.psu.edu/http://www.ipython.org/http://www.pgbovine.net/cde.htmlhttps://kepler-project.org/users/sample-workflowshttp://www.vistrails.org/index.php/Documentation

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Wkskjr`a @ldpkfoej]eblt prlik`t9 edprlvk ufokrstjfoefn

lh rkprlou`egbk `ldputjtelfjbs`ekf`k, trj`k slur`ks lh krrlr. befc ojtj/`lok tl pugbesako `bjeds,

rk-usk, rkskjr`a prlou`ks j nueok tl

kdpere`jb rkskjr`akrs, `krteksrksubts,

bjrnk s`jbk vjbeojtelf lh foefns, stjgebety, skfsetevety ak`cs.

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E@KWD lrcsalp Ok` 7=

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E@KWD lrcsalp Wkplrt

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Wkhkrkf`ks_lwjro Wkprlou`egbk @ldputjtelfjb Wkskjr`a9 Jf Kdpere`jbOjtj jfo @lok ]lbe`y Jolptelf gy Ilurfjbs, ]BlP LFK, Iufk

Wkprlou`egbk Wkskjr`a, nukst koetlr hlr @ldputefn ef P`ekfKfnefkkrefn, Iuby/Junust 7=:7.Wkprlou`egbk Wkskjr`a9 _llbs jfo Ptrjtkneks hlr P`ekfte` @lIuby 7=::.Kfjgbefn Wkprlou`egbk Wkskjr`a9 Lpkf Be`kfsefn hlr P`ekfteEfflvjtelf, 7==5.

jvjebjgbk jt attp9//www.stlookf.fkt

http://www.stanford.edu/~vcshttp://www.mitacs.ca/events/index.php?option=com_content&view=article&id=214&Itemid=231&lang=frhttp://www.plosone.org/article/authors/info%253Adoi%252F10.1371%252Fjournal.pone.0067111