translational informatics (idtc 289). who we are
TRANSCRIPT
Translational Informatics (IDTC 289)
Who we are
What we do
• Help finding new cures for old diseases using large scale data mining, machine learning, modeling, and simulation
Who we work with (on weekly basis)
Industrial collaboration
• $300K/year since 2005
• 2 clusters + other servers
What we need
• Big iron• Chilaca ($70K, 2006) – 16 nodes, 2 CPUs+2GB RAM/node (IDTC – retired)• Synergy ($60K, 2010) – 18 nodes, 8 cores+24GB RAM/node (CARC – production)• Pinon ($99K, 2012) – 33 nodes, 24 cores+64GB RAM/node (IDTC – production)• Access to other CARC clusters
• Good workstations• Most people have both Win and Linux workstations• I use daily
• 32 GB Win7 desktop ($3K)• 16 GB Linux desktop ($1.8K +$2.6K 3D graphic card)
• High speed network connections!!!• Across building• Across campus• Across the world
High speed network – across building$ time scp [email protected]:cnav.oeb.gz .
[email protected]'s password:
cnav.oeb.gz 100% 14GB 55.8MB/s 04:26
real 4m30.818s
user 3m1.771s
sys 0m57.960s
$ time scp cnav.oeb.gz [email protected]:
[email protected]'s password:
cnav.oeb.gz 0% 12MB 0.0KB/s - stalled -^C
real 9m51.847s
user 0m0.276s
sys 0m0.036s
High speed network – across campus[cbologa@pinon ~]$ time scp [email protected]:work/cnav/cnav.oeb.gz .
[email protected]'s password:
cnav.oeb.gz 100% 14GB 8.5MB/s 29:06
real 29m14.343s
user 3m13.421s
sys 2m1.670s
[cbologa@pinon ~]$ time scp cnav.oeb.gz [email protected]:
[email protected]'s password:
cnav.oeb.gz 1% 250MB 0.0KB/s - stalled -^C
Killed by signal 2.
real 9m28.622s
user 0m2.310s
sys 0m0.837s
Research Network
• We really need it• We do not want to slow down Netflix and YouTube users with our big
files
• THANK YOU