togodoc: smart recommendation and efficient …smart recommendation and efficient management of...

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TogoDoc: Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo)

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Page 1: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

TogoDocSmart Recommendation and Efficient Management of Life Science LiteratureWataru Iwasaki (Univ Tokyo)

0

5000000

10000000

15000000

20000000

2001 2003 2005 2007 2009

1 So many papers being published everyday

778683papersyear

MEDLINE Citation Counts by Year of Publication

In the omics erainterpretation of big datarequires more knowledgeconcerning more topics or journals

2 So many PDF papersin researchers computers

TogoDoc runs on Windows and MacOSX and provided for free

httptdccbku-tokyoacjp

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 2: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

0

5000000

10000000

15000000

20000000

2001 2003 2005 2007 2009

1 So many papers being published everyday

778683papersyear

MEDLINE Citation Counts by Year of Publication

In the omics erainterpretation of big datarequires more knowledgeconcerning more topics or journals

2 So many PDF papersin researchers computers

TogoDoc runs on Windows and MacOSX and provided for free

httptdccbku-tokyoacjp

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 3: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

In the omics erainterpretation of big datarequires more knowledgeconcerning more topics or journals

2 So many PDF papersin researchers computers

TogoDoc runs on Windows and MacOSX and provided for free

httptdccbku-tokyoacjp

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 4: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

2 So many PDF papersin researchers computers

TogoDoc runs on Windows and MacOSX and provided for free

httptdccbku-tokyoacjp

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 5: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

TogoDoc runs on Windows and MacOSX and provided for free

httptdccbku-tokyoacjp

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 6: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

200708200802200807200912201102

Project LaunchedAlpha VersionBeta VersionVersion 104Version 124

Developed at Univ Tokyo ampDatabase Center for Life Science

History of TogoDoc

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 7: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Literature management and recommendationin one system

Client Server

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 8: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Win JP

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 9: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Mac EN

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 10: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

ArticleExplorer Literature

Tab

TagExplorer

SearchRecommendationPane

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 11: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Easy ManagementOnce you tell Client where you usually save PDF papersit automatically analyzes and manages papersif you just download and save them

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 12: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

PubMed RecommendationBased on the analyses Client recommends papers in which you would be interested from those recently registered to PubMed by communicating with the TogoDoc serverusing words in the texts MeSH terms authors and journal types which reflect researchers interest

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 13: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Useful FunctionsClient offers useful functions of automatic renaming of PDF filenames associative search of past-read papers etc

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 14: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

SynchronizationLiterature libraries are synchronizable bw server and multiple computers

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 15: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

TogoDoc serverLibrary is also accessible via web browsers

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 16: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Refinement ofrecommendationsby focusing onparticular keywords

Permalinks makerecommendations available

via smartphones etc

Special features available on TogoDoc server

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 17: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Technology KeywordsJava TogoDoc software is implemented in JavaEclipse Rich Client Platform TogoDoc software platformJPedal Java library for analyzing PDFLAMP Server is deployed using Linux Apache MySQL PerlTokyo Cabinet Server-side database managerOpenID Authentication protocol for sharing a single accountJSON Data transfer format bw server and clientRSSATOM Data transfer format for RSS readersPubMedMEDLINE Literature databases at NCBINCBI E-Utilities API to access PubMedLemurIndri Information retrieval toolkitMeSH Subject headings in MEDLINEBibGlimpse Bibliographic analyzer

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 18: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Want to try TogoDocSearch ldquoTogoDocrdquo

Interested in TechnologyRead our paper

httptdccbku-tokyoacjp PLoS ONE 5(12) e15305

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 19: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

It is necessary to supplement our information

processing ability

Usually computers are not good at making such

subjective judgements though

fortunately the literature sets can easily quantify

researchers interest in a very compact and machine

friendly manner and may have high potential

To promote research in information flood

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development

Page 20: TogoDoc: Smart Recommendation and Efficient …Smart Recommendation and Efficient Management of Life Science Literature Wataru Iwasaki (Univ Tokyo) 0 5,000,000 10,000,000 15,000,000

Literature is the key in promoting research activities

In addition to (or together with) solving the legal

economical and social issues

Research and development on literature may

promote research as a whole

Who does it

Lessons from TogoDoc Development