the role of the microbiome in colon cancer · irrazabal et al, mol cell. 2014 . potential origins...

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The Role of the Microbiome in Colon Cancer Alberto Martin, PhD University of Toronto

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Page 2: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Irrazabal et al, Mol Cell 2014

Colorectal Cancer (CRC)

Page 3: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Factors that promote CRC development

Li & Martin Trend Mol Med 2016

Page 4: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Irrazabal et al, Mol Cell 2014

Potential origins of genetic mutations in Colorectal Cancer

1. Microbes (e.g. colibactin, BFT, CDT)

2. Inflammatory Cells (ROS, NO)

3. DNA repair Deficiency (MMR)

Page 5: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

1.Colitis associated CRC (~5%)2.Genetic non-colitis CRC (~95%)

Page 6: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MicrobiotaInflammation

CRC

Escherichia coli NC101 (Jobin; Science 2012)Enterotoxigenic Bacteroides fragilis (Sears, Science 2018)Helicobacter hepaticus (Many papers)

Page 7: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

IL10-/-

A mouse model for IBD

Develop 3 different models of CRC and assess whether the oncogenic mechanism is similar in all 3 models

Page 8: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 1: Helicobacter hepaticus induces inflammation and CRC in IL10-/- mice

Page 9: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 1: Helicobacter hepaticus induces dysbiosis in IL10-/- mice

IL10-/- IL10+/-

How does sustained inflammation lead to CRC?

Page 10: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Irrazabal et al, Mol Cell 2014

Potential origins of genetic mutations in Colorectal Cancer

1. Microbes (e.g. colibactin, BFT, CDT)

2. Inflammatory Cells (ROS, NO)

3. DNA repair Deficiency (MMR)

Page 11: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

ROSNO

Page 12: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)
Page 13: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

ROSNO

VitC, NAC

L-NIL

•NO + O2•- ONOO- Peroxynitrite

Page 14: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 1: Antioxidants and L-NIL reduce oxidative DNA damage in Helicobacter-infected IL10-/- mice

H. mastomyrinus + H. typhlonius

H. mastomyrinus

H.mast + H.typh

Page 15: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 1: Antioxidants and L-NIL reduce CAC in Helicobacter-infected IL10-/- mice

Inflammation

H.mast + H.typh

Page 16: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Polyps

MODEL 1: Antioxidants and L-NIL reduce CAC in Helicobacter-infected IL10-/- mice

H.mast + H.typh

Page 17: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 2: E.coli NC101 and Enterotoxigenic B. fragilisinduces inflammation and CAC in IL10-/- mice

- +

Page 18: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 2: VitC and L-NIL do not reduce inflammation in E.coli NC101 and ETBF-infected IL10-/- mice

Page 19: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 2: Reducing NO and ROS leads to reduced oxidative DNA damage

Page 20: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 2: VitC and L-NIL reduce CAC in E.coli NC101 and ETBF-infected IL10-/- mice

Page 21: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 3: DSS induces inflammation and CRC in IL10-/- mice

Page 22: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

MODEL 3: VitC and L-NIL reduce CAC in DSS-treated IL10-/- mice

Inflammation Polyps

Page 23: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Reducing oxidative DNA damage in colitis models reduces Colitis-associated Colon Cancer

Conclusion 1:

Page 24: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

1.Colitis associated CRC (~5%)2.Genetic non-colitis CRC (~95%)

Page 25: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

The mismatch repair pathway repairs incorporated 8-OxoG

Page 26: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Mismatch repair (MMR)

DNA Repair❑ MMR pathway repairs errors made during

DNA replication.

Martin & Scharff Nat Rev Imm 2002

Page 27: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

❑ Patients with germ line mutations in MMR genes (Lynchsyndrome) are prone to develop CRC in 80% of the cases

❑ ~15% of all sporadic cancers harbour mutations in MMRgenes

Mismatch Repair pathway and cancer

Is Oxidative DNA damage relevant in MMR-deficient models?(Microbiota induce CRC in MMR deficient mice; Belcheva Cell 2014)

Page 28: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Increased oxidative DNA damage in Lynch syndrome tumors

Page 29: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Microbiota induces high levels of 8-oxoG in MMR-deficient colons

How do microbes induce high levels of oxidative DNA damage?

Page 30: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

DHE

Mito-Sox Red

Kumar et al J. Immunology 2009

Butyrate induces ROS in Rat small intestine epithelial cells

We confirmed this result

Page 31: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Antibiotic treatment reduces butyrate in the GI track in mice

Belcheva Cell 2014

Page 32: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Butyrate is sufficient to partially increase 8-oxoG in MMR-deficient colonocytes

Page 33: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

VitC reduces oxidative DNA damage in a Lynch syndrome mouse model

Page 34: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

VitC reduces CRC in a Lynch syndrome mouse model

Page 35: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

Microbial-induced oxidative DNA damage play causative

roles in inflammatory and hereditary CRC models

❑ Potentially provides therapeutic avenues for these

susceptible populations.

Conclusion 2:

Page 36: The Role of the Microbiome in Colon Cancer · Irrazabal et al, Mol Cell. 2014 . Potential origins of genetic mutations in Colorectal Cancer. 1. Microbes (e.g. colibactin, BFT, CDT)

The Martin lab:Dr. Thergiory IrrazabalDr. Bhupesh ThakurDr. Mingsong KangDr. Antoaneta BelchevaDr. Yann MalaiseDr. Yuqing FengDr. Conglei LiDr. Saurav Choudhury Alex Ling Matthew WongPhilip BarbulescuMaribel Berru

Collaborators:

Dr. David S. Guttman

Dr. William Navarre

Dr. Robert Gryfe

Dr. Tak Mak

Dr. Cathy Streukter