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table 5abc

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A EPD60 Gene Expression/ Associated Matched Matched B Sequence Sites Regulation Field EPD60 Myb 126 Myb 413 Name EMBL ID Length (bp) Detected Keyword Promoters Matrix Matrix Myb Ta histone H4 X00043 600 2 leaves 39 8 5 126 Pv GRP 1.8 X13596 587 2 stem 5 1 0 & Be 2S seed protein X54490 307 1 ♦♦ root 9 1 1 413 Ath LHC II AB180 X03908 255 1 petals 6 3 1 Ph RuBPCss 611 X12987 413 1 ♦ ovaries 1 1 1 Hb HMG-CoA red. hmg3 M74799 600 2 seed 5 2 2 Ath chalcone synthase AB005230 600 2 ♦♦ seedling 3 2 0 Zm[a1] (anthocyanin) X05068 600 2 embryo 8 2 1 Pc 4CL1 X05350 600 3 endosperm 25 6 4 Pc 4CL2 X05351 600 4 kernels 2 1 1 Os PAL GP-1 X16099 600 3 aleurone 10 4 5* Pc PAL-1 Y07654 600 3 scutellum 2 1 1 Pc PAL-2 L37355 360 2 hypocotyl 1 1 1 Pc PAL-3 L37356 600 3 cotyledon 19 1 3 Pc PAL-4 L37357 600 2 photosynthetic tissues 1 1 1 Hv a'-amylase 2 M17127 360 1 many tissues, other tissues 2 2* 2* Myb Gm hsp 17.9-D X07159 600 3 ubiquitous 3 1 1 126 light, +UV 39 16 ** 12 Ta LHC cab-1 X05823 600 2 ♦ -light (negative feedback) 1 1 0 Myb Ph LHC II type 2 X04966 263 1 dark-grown seedlings 2 1 1 413 Gm RuBPCss SRS4 M16889 600 3 ♦ +wounding 15 7* 5 Zm[C1-I] X52201 600 2 ♦ +fungal infection 10 7 *** 6 ** Gm protease inh. BB K01967 158 1 plant tumor 8 2 2 infected leaves 4 1 1 -abscisic acid 7 3 4* +GA 8 3 4* C Myb 126 MatInd Matrix: proliferating cells/tissues 3 1 1 re= 0.21 +heatshock 10 1 1 Myb 413 MatInd Matrix: housekeeping gene 11 3 2 re= 0.14 Matching EPD60 Promoters NNYYYACCTACCNNNNN ANYNYACCTAMCGNNNN

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Page 1: Table 5abc

AAAA EEEEPPPPDDDD66660000 GGGGeeeennnneeee EEEExxxxpppprrrreeeessssssssiiiioooonnnn//// AAAAssssssssoooocccciiiiaaaatttteeeedddd MMMMaaaattttcccchhhheeeedddd MMMMaaaattttcccchhhheeeedddd BBBB SSSSeeeeqqqquuuueeeennnncccceeee SSSSiiiitttteeeessssRRRReeeegggguuuullllaaaattttiiiioooonnnn FFFFiiiieeeelllldddd EEEEPPPPDDDD66660000 MMMMyyyybbbb 111122226666 MMMMyyyybbbb 444411113333 NNNNaaaammmmeeee EEEEMMMMBBBBLLLL IIIIDDDD LLLLeeeennnnggggtttthhhh ((((bbbbpppp)))) DDDDeeeetttteeeecccctttteeeeddddKKKKeeeeyyyywwwwoooorrrrdddd PPPPrrrroooommmmooootttteeeerrrrssss MMMMaaaattttrrrriiiixxxx MMMMaaaattttrrrriiiixxxx MMMMyyyybbbb Ta histone H4 X00043 600 2lllleeeeaaaavvvveeeessss 33339999 8888 5555 111122226666 Pv GRP 1.8 X13596 587 2sssstttteeeemmmm 5555 1111 0000 &&&& Be 2S seed protein X54490 307 1 ♦♦

rrrrooooooootttt 9999 1111 1111 444411113333 Ath LHC II AB180 X03908 255 1ppppeeeettttaaaallllssss 6666 3333 1111 Ph RuBPCss 611 X12987 413 1 ♦oooovvvvaaaarrrriiiieeeessss 1111 1111 1111 Hb HMG-CoA red. hmg3 M74799 600 2sssseeeeeeeedddd 5555 2222 2222 Ath chalcone synthase AB005230 600 2 ♦♦

sssseeeeeeeeddddlllliiiinnnngggg 3333 2222 0000 Zm[a1] (anthocyanin) X05068 600 2eeeemmmmbbbbrrrryyyyoooo 8888 2222 1111 Pc 4CL1 X05350 600 3eeeennnnddddoooossssppppeeeerrrrmmmm 22225555 6666 4444 Pc 4CL2 X05351 600 4kkkkeeeerrrrnnnneeeellllssss 2222 1111 1111 Os PAL GP-1 X16099 600 3aaaalllleeeeuuuurrrroooonnnneeee 11110000 4444 5555 **** Pc PAL-1 Y07654 600 3ssssccccuuuutttteeeelllllllluuuummmm 2222 1111 1111 Pc PAL-2 L37355 360 2hhhhyyyyppppooooccccoooottttyyyyllll 1111 1111 1111 Pc PAL-3 L37356 600 3ccccoooottttyyyylllleeeeddddoooonnnn 11119999 1111 3333 Pc PAL-4 L37357 600 2pppphhhhoooottttoooossssyyyynnnntttthhhheeeettttiiiicccc ttttiiiissssssssuuuueeeessss 1111 1111 1111 Hv a'-amylase 2 M17127 360 1mmmmaaaannnnyyyy ttttiiiissssssssuuuueeeessss,,,, ooootttthhhheeeerrrr ttttiiiissssssssuuuueeeessss 2222 2222 **** 2222 **** MMMMyyyybbbb Gm hsp 17.9-D X07159 600 3uuuubbbbiiiiqqqquuuuiiiittttoooouuuussss 3333 1111 1111 111122226666lllliiiigggghhhhtttt,,,, ++++UUUUVVVV 33339999 11116666 ******** 11112222 Ta LHC cab-1 X05823 600 2 ♦----lllliiiigggghhhhtttt ((((nnnneeeeggggaaaattttiiiivvvveeee ffffeeeeeeeeddddbbbbaaaacccckkkk)))) 1111 1111 0000 MMMMyyyybbbb Ph LHC II type 2 X04966 263 1ddddaaaarrrrkkkk----ggggrrrroooowwwwnnnn sssseeeeeeeeddddlllliiiinnnnggggssss 2222 1111 1111 444411113333 Gm RuBPCss SRS4 M16889 600 3 ♦++++wwwwoooouuuunnnnddddiiiinnnngggg 11115555 7777 **** 5555 Zm[C1-I] X52201 600 2 ♦++++ffffuuuunnnnggggaaaallll iiiinnnnffffeeeeccccttttiiiioooonnnn 11110000 7777 ************ 6666 ******** Gm protease inh. BB K01967 158 1ppppllllaaaannnntttt ttttuuuummmmoooorrrr 8888 2222 2222iiiinnnnffffeeeecccctttteeeedddd lllleeeeaaaavvvveeeessss 4444 1111 1111----aaaabbbbsssscccciiiissssiiiicccc aaaacccciiiidddd 7777 3333 4444 ****++++GGGGAAAA 8888 3333 4444 **** CCCC MMMMyyyybbbb 111122226666 MMMMaaaattttIIIInnnndddd MMMMaaaattttrrrriiiixxxx::::pppprrrroooolllliiiiffffeeeerrrraaaattttiiiinnnngggg cccceeeellllllllssss////ttttiiiissssssssuuuueeeessss 3333 1111 1111 rrrreeee==== 0000....22221111++++hhhheeeeaaaattttsssshhhhoooocccckkkk 11110000 1111 1111 MMMMyyyybbbb 444411113333 MMMMaaaattttIIIInnnndddd MMMMaaaattttrrrriiiixxxx::::hhhhoooouuuusssseeeekkkkeeeeeeeeppppiiiinnnngggg ggggeeeennnneeee 11111111 3333 2222 rrrreeee==== 0000....11114444

MMMMaaaattttcccchhhhiiiinnnngggg EEEEPPPPDDDD66660000 PPPPrrrroooommmmooootttteeeerrrrssss

NNNNNNNNYYYYYYYYYYYYAAAACCCCCCCCTTTTAAAACCCCCCCCNNNNNNNNNNNNNNNNNNNN

AAAANNNNYYYYNNNNYYYYAAAACCCCCCCCTTTTAAAAMMMMCCCCGGGGNNNNNNNNNNNNNNNN

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