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WWW.NATURE.COM/NATURE | 1 SUPPLEMENTARY INFORMATION doi:10.1038/nature22080 SUPPLEMENTARY DISCUSSION INDEX: SYSTEMATIC PALEONTOLOGY (P1) SYSTEMATICS AND SIGNIFICANCE OF MORPHOLOGY (P3) OTHER TAXA POSSIBILY RELATED TO HYMENOCARINA AND THE SIGNIFICANCE OF FOSSIL LARVAE (P6) PHYLOGENETIC ANALYSIS (P7) CHARACTER LIST (P10) SUPPORTING REFERENCES (P39) SYSTEMATIC PALEONTOLOGY Panarthropoda Nielsen, 1995 Euarthropoda Lankester, 1904 Heptopodomera Aria et al., 2015 Order Hymenocarina Clarke, 1882 (emended Raymond 1935) Type genus. Canadaspis Walcott, 1912. Included taxa. Canadaspidida Novozhilov (in Orlov) [inc. Canadaspididae Novozhilov (in Orlov), Odaraiidae Simonetta & Delle Cave], Protocarididae Miller (emended hereafter). Other putative members are: Perspicarididae Briggs, Nereocaris Legg et al., Jugatacaris Fu & Zhang, Plenocaris Walcott and Waptidae Walcott. Emended diagnosis. Euarthropods with bivalved carapace covering cephalothoracic region up to a large portion of post-cephalothoracic tagma; plesiomorphically, cephalothorax bearing well-developed antennules and enditic endopod podomeres with well-developed terminal claws; limb basis segmented; posterior tagma with tergo-pleural rings; tailpiece a rounded telson bearing well-developed caudal rami. Protocarididae Miller, 1889 Type genus and species. Protocaris marshi Walcott, 1884 (by original designation). Included genera. Branchiocaris Resser (sensu Briggs 1976), Tokummia gen. nov. (infra), Protocaris Walcott, Loricicaris Legg and Caron. Emended diagnosis. Hymenocarine euarthropods with body enclosed for ca. 5/7 of its length in a bipartite dorsal carapace whose valves are sub-elliptical in shape, presenting an overall transverse sub-symmetry, with long axis ca. 1.85 times longer than short axis, and with convex antero-posterior and ventral margins and sub-straight dorsal margin; in dorso-ventral view, angle between posterior lobes of valves more acute than in anterior; short antero- and postero-dorsal extremities of carapacal valves produced into short, blunt spinose processes; margin of valves made of an undulated frieze-like rim; post-thoracic body poly-segmented, composed of ca. 40 tergo-pleural rings, with length and width of segments gradually tapering over the anterior half of its length; posterior tergo-pleural rings much wider than long (14 times); tailpiece with rounded, short tergal plate whose tergite covers several terminal body segments; pair of caudal rami attached to anal segment beneath tergal plate; appendages defining three distinct body tagmata; tagma I (head) comprising six somites: small eyes likely present; pre-oral sub-triangular anterior process composed of a dorsal sclerite covering a bilobed structure with both soft and sclerotized elements; antennules ca. 20-segmented, strong proximo-distal tapering coupled with an increase of segment length; post- antennular appendage undeveloped; third appendage with endopod and exopod reduced and gnathal base forming a large mandible with masticatory process; fourth appendage with reduced ?four-segmented endopod; tagma II ?11- segmented: first appendage a pair of clawed maxillipeds; remaining appendages long and robust, with basipod six- “segmented” (arthrodization unknown) bearing five spinose endites plus slightly larger proximal endite (“coxa”); endopod stout, seven-segmented, ending in a pair of long claws; exopod much shorter than endopod, stenopodous, ?seven-segmented, ending in rounded setose segment; tagma III ca. 50-segmented: appendages composed of increasingly reduced stenopodous endopod and large phyllopodous exopod; intestine a simple tube (2/9th of trunk diameter).

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Page 1: SUPPLEMENTARY INFORMATION - Nature...130 size from appendage 8. Thick arthrodial membrane at the base of the limb. Transition thorax (tagma II)/postthorax- 131 (tagma III) unclear

W W W. N A T U R E . C O M / N A T U R E | 1

SUPPLEMENTARY INFORMATIONdoi:10.1038/nature22080

1

SUPPLEMENTARY DISCUSSION 1 2 3 INDEX: 4 5 SYSTEMATIC PALEONTOLOGY (P1) 6

SYSTEMATICS AND SIGNIFICANCE OF MORPHOLOGY (P3) 7 OTHER TAXA POSSIBILY RELATED TO HYMENOCARINA AND THE SIGNIFICANCE OF 8

FOSSIL LARVAE (P6) 9 PHYLOGENETIC ANALYSIS (P7) 10 CHARACTER LIST (P10) 11 SUPPORTING REFERENCES (P39) 12 13 14 15 SYSTEMATIC PALEONTOLOGY 16 Panarthropoda Nielsen, 1995 17 Euarthropoda Lankester, 1904 18 Heptopodomera Aria et al., 2015 19 20 Order Hymenocarina Clarke, 1882 (emended Raymond 1935) 21 22 Type genus. Canadaspis Walcott, 1912. 23 Included taxa. Canadaspidida Novozhilov (in Orlov) [inc. Canadaspididae Novozhilov (in Orlov), Odaraiidae 24 Simonetta & Delle Cave], Protocarididae Miller (emended hereafter). Other putative members are: Perspicarididae 25 Briggs, Nereocaris Legg et al., Jugatacaris Fu & Zhang, Plenocaris Walcott and Waptidae Walcott. 26 Emended diagnosis. Euarthropods with bivalved carapace covering cephalothoracic region up to a large portion of 27 post-cephalothoracic tagma; plesiomorphically, cephalothorax bearing well-developed antennules and enditic 28 endopod podomeres with well-developed terminal claws; limb basis segmented; posterior tagma with tergo-pleural 29 rings; tailpiece a rounded telson bearing well-developed caudal rami. 30 31 Protocarididae Miller, 1889 32 33 Type genus and species. Protocaris marshi Walcott, 1884 (by original designation). 34 Included genera. Branchiocaris Resser (sensu Briggs 1976), Tokummia gen. nov. (infra), Protocaris Walcott, 35 Loricicaris Legg and Caron. 36 Emended diagnosis. Hymenocarine euarthropods with body enclosed for ca. 5/7 of its length in a bipartite dorsal 37 carapace whose valves are sub-elliptical in shape, presenting an overall transverse sub-symmetry, with long axis ca. 38 1.85 times longer than short axis, and with convex antero-posterior and ventral margins and sub-straight dorsal 39 margin; in dorso-ventral view, angle between posterior lobes of valves more acute than in anterior; short antero- and 40 postero-dorsal extremities of carapacal valves produced into short, blunt spinose processes; margin of valves made 41 of an undulated frieze-like rim; post-thoracic body poly-segmented, composed of ca. 40 tergo-pleural rings, with 42 length and width of segments gradually tapering over the anterior half of its length; posterior tergo-pleural rings 43 much wider than long (14 times); tailpiece with rounded, short tergal plate whose tergite covers several terminal 44 body segments; pair of caudal rami attached to anal segment beneath tergal plate; appendages defining three distinct 45 body tagmata; tagma I (head) comprising six somites: small eyes likely present; pre-oral sub-triangular anterior 46 process composed of a dorsal sclerite covering a bilobed structure with both soft and sclerotized elements; 47 antennules ca. 20-segmented, strong proximo-distal tapering coupled with an increase of segment length; post-48 antennular appendage undeveloped; third appendage with endopod and exopod reduced and gnathal base forming a 49 large mandible with masticatory process; fourth appendage with reduced ?four-segmented endopod; tagma II ?11-50 segmented: first appendage a pair of clawed maxillipeds; remaining appendages long and robust, with basipod six-51 “segmented” (arthrodization unknown) bearing five spinose endites plus slightly larger proximal endite (“coxa”); 52 endopod stout, seven-segmented, ending in a pair of long claws; exopod much shorter than endopod, stenopodous, 53 ?seven-segmented, ending in rounded setose segment; tagma III ca. 50-segmented: appendages composed of 54 increasingly reduced stenopodous endopod and large phyllopodous exopod; intestine a simple tube (2/9th of trunk 55 diameter). 56

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57Tokummia katalepsis gen. et sp. nov.58

59Life Science Identifiers (LSIDs). urn:lsid:zoobank.org:act:EAC748D1-9FF5-49C4-917B-C015AABDCD1F60(genus); urn:lsid:zoobank.org:act:9BF24AC0-424D-4314-8780-3AC1D9E8159C (species).61Etymology. Tokumm (Stoney Indian), “red fox,” name of the river running through Marble Canyon, close to the 62deposit where the holotype was found; katalepsis (Greek), “seizing, grasping, holding, assaulting,” by reference to63the large, chelate maxillipeds of the animal.64Holotype. ROM 63823; paratypes ROM 63014, 63081, 63824–63827, 63736 (7 specimens)65Other material. ROM 63014, 63709, 63825, 63826(x1), 63827, 63829, 63840-63846, 63848, 63849 from Marble 66Canyon (“Thick” Stephen Formation).67Locality. Marble Canyon, Kootenay National Park, British Columbia, Canada.68Horizon. Upper “thick” Stephen Formation, Cambrian Series 3, Stage 5. 69Diagnosis. Large (great axis of valve: 7.31 ± 1.47 cm; N=17) protocaridid arthropod with strongly developed 70maxillipeds (distal portion ca. 0.65 times carapace length); peduncle large cylindrical, to which articulate two 71elongate sub-opposing articles; outer element ending in a pair of unmovable spines; inner element curved distally, 72with tip abruptly turned inward and adorned with four teeth along curvation; caudal rami ca. 12-segmented, arched, 73tubular and ?setose.74

75Description (for references to figures, see main text and following section). Habitus. Posteriorward tapering, 76stout poly-segmented body enclosed for 5/7 of its length in a carapace divided into two distinct sub-elliptical valves; 77pair of antennules and large maxillipeds protruding anteriorly; thoracic tagma bearing strong endopods with well-78developed claws; furcate tailpiece.79

Carapace. Thick and large carapace (great axis of valve: 7.31 ± 1.47 cm; N=17) tightly jointed along the 80dorsal margin forming two sub-elliptical transversally sub-symmetrical valves truncated dorsally, with ventral and 81antero-posterior margins convex; long axis of valve ca. 1.85 times longer than short axis, and with convex antero-82posterior and ventral margins and sub-straight dorsal margin; in dorso-ventral view, angle between posterior lobes of 83valves more acute than anterior; short antero- and postero-dorsal extremities of carapacal valves produced into short, 84blunt spinose processes; ventral extension of the carapace fully covering trunk limbs; strip of cuticle layering the 85underside of the carapacal joint, serving as hinge; internal surface of valves covered with a doublure; margin of 86valves made of an undulated frieze-like rim.87

Anteriormost structure. Large rostral structure composed of two elements: a sclerotic plate and a likely88bilobed, partly fleshy protrusion. Sclerotic plate with sub-triangular anterior extension and lateral “shoulders” with 89convex margins; lateral parts of sclerite bulgy and mostly covered by carapace in dorsal view, possibly attached to 90anterior extremity of body; posterior margin of sclerite uncertain. Protrusion placed underneath sub-triangular 91extremity of sclerite; dark traces at the base of these protrusions suggest presence of more strongly sclerotized 92elements; posteriorly, protrusion likely attached to anterior extremity of body.93

Eyes. Pair of eyes possibly indicated by highly reflective spots located on the dorsal equivalent of the outer 94margin of the mandibular area.95

Antennules. ca. 20-segmented. Stout aspect, with segments dramatically tapering and elongating proximo-96distally (from width ca. 10 times length to width 1/3 of length). Nine terminal segments commonly jutting out from 97under carapace in dorsal view. Additional distal-most segment minute and rounded, inserted laterally just posterior 98to the labrum and adjacent to the insertion of mandibles.99

Mouth and stomodeal area. Mouth elongate, flanked by lip-like cuticular elevations where the masticatory100margins of the mandibles may have been attached.101

Mandible. Large (slightly more than half of anterior body width), ovoid, with masticatory (molaris) margin 102bearing a row of stout teeth.103

Maxillule and maxilla. Exact limb morphology uncertain; maxillule possibly a much-reduced limb; 104proximal portion made of an elongate gnathobase with short masticatory margin with few, stout teeth and with 105rounded basis bearing spinose process attached interno-mesially; likely presence of a second proximal-most process 106with rounded, toothed endite and basal spine, similar to enditic outgrowths of posterior appendages.107

Maxilliped. Long (about half of carapacal length), composed of a five-segmented proximal portion and a 108distal chelate portion with an enlarged basal article (=peduncle, or manus) and two claw elements; chelate part 109slightly longer than the three distalmost proximal segments altogether. First two proximal segments (p1, p2) forming 110lateral attachment to body and with limited flexibility; other proximal segments (p3 to p5) allowing for bending of 111appendage ventrally under the body; p3 to p5 as cylinders gently tapering proximalward, equally sized and jointed 112

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by conspicuous arthrodial membranes. Manus (p6) with ellipsoidal longitudinal section, containing two spherical 113 reflective spots possibly connected. Outer/dorsal element (p7), or pollex, an elongate article ending in strong bifid 114 claw; claw elements triangular; lower claw element slightly longer than lower one; outer margin concave; spacing 115 and size of distal claw elements identical in all specimens; fixed situation assumed, separation between lower 116 element and ramus possibly of taphonomic origin; likewise, whole pollex commonly separated from manus by 117 cuticular line interpreted as compressional fold, and fixed condition assumed based on the consistent position of the 118 pollex in all specimens. Inner/ventral article (p8), or dactyl, gently curved outward in the first 2/3 of its length, and 119 ending in a strong inward curvation so that the tip points outward and quasi laterally; ventral margin (facing 120 dorsally) adorned just posteriorly to the distal curvation by four triangular teeth; dactyl movable, with base inserting 121 in a cuticular notch at the base of pollex. 122

Trunk. Trunk composed of ca. 50 segments progressively tapering posteriorward; segments forming tergo-123 pleural rings; first eleven segments bearing biramous limbs with strong endopods ending in well-developed terminal 124 claws; first eight exopods much shorter, exopods of trunk limbs 9 to (at least) 11 larger and morphologically similar 125 to posterior exopods; posterior trunk segments (?12 and posteriorward) much wider than long throughout (up to 10 126 times); sternites well sclerotized and strongly expressed all along trunk. 127

Thoracic appendages. Appendages 6 to (at least) 11 biramous, with multi-partite basipod and strong, 128 clawed endopods; appendages 6 and 7 ca. 1/3 thinner than following appendages; terminal claw gradually reduced in 129 size from appendage 8. Thick arthrodial membrane at the base of the limb. Transition thorax (tagma II)/post-thorax 130 (tagma III) unclear. 131

Basipod. Large (ca. 1/3 of limb length), enditic, 5-segmented. Four equally-sized distal endites 132 known, proximal endite incompletely preserved. Enditic structure bipartite, composed of a rounded, 133 toothed, setose dorsal element, and of a ventral spine with enlarged basis. 134

Endopod. Endopod seven-segmented (terminal claw included). Four first proximal podomeres 135 gradually reduced in size; fifth podomere slightly longer than fourth, its interno-distal margin produced into 136 a pair of spines, long as ca. the length of the segment proper; sixth podomere much reduced (ca. 1/2 of 137 podomere 4); terminal podomere a pair of long and strong claws (length ca. 1/5 of endopod). Outer margin 138 of podomere segments concave; inner margin straight to convex; podomeres 1 to 4 with small rounded 139 projections on their interno-distal margins. 140

Exopod. Post-cephalic appendages 1 to 8: proximal portion elongate; remaining morphology 141 unclear. Post-cephalic appendages 9 to (at least) 11: proximal portion elongate, distal portion soft and 142 lobate, as long or longer than distance between limb attachment and ventral margin of carapace. 143

Post-thoracic appendages. Appendages ?12 and posteriorward gradually reduced in size; biramous, with 144 dominant lobate phyllopodous exopod. 145 Basipod. Based on specimens preserved laterally, morphology similar to thoracic exopods. 146 Morphology of terminal limbs in Branchiocaris suggests basipod becomes much reduced posteriorly and may retain 147 fewer segments. 148 Endopod. Unclear in Tokummia. Known stages of reduction in Branchiocaris include an 149 intermediate segmented limb retaining some of the podomere differentiation and a terminal series of vestigial 150 segmented buds. 151 Exopod. Posterior exopods broad and soft, prone to multiple and irregular folding; no outstanding 152 surfacial features observed; stacking of prominent material basally suggests the presence of a proximal lobe. 153

Gut. Gut a simple but rather large (1/3 of body diameter) intestine with no hindgut differentiation; foregut 154 differentiation uncertain; no visible alimentary glands along the body. 155 Tailpiece. Tailpiece a rounded, bud-like telson with a pair of segmented (ca. 12 annuli) caudal rami 156 attached to the latero-ventral articulation with the last segment of the trunk proper; attachment of caudal rami with 157 telson covered by tergal plate possibly extending over additional pre-telsal segments. 158 159 160 SYSTEMATICS AND SIGNIFICANCE OF MORPHOLOGY 161 162 Tokummia katalepsis gen. et sp. nov. is described based on 21 specimens (see Methods) assigned to 163 Heptopodomera32 based on the presence of exopods in tagmata II and III and of endopods with seven podomeres in 164 at least tagma II (Figs 1–3 and Extended Data Fig. 2). This species is also placed under Hymenocarina (emended 165 above) based notably on the presence of a large bivalved carapace and multi-segmented enditic basipod; whether 166 those segments are in fact arthrodized is presently unclear. Tokummia differs from Branchiocaris33 in the larger size 167 of its maxillipeds, the more distinct identity of its thorax by reduction of the exopods, and the segmentation of its 168

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caudal rami. Tokummia also differs from Protocaris33 in its overall size, as well as in its large maxillipeds. The 169 assignment of Protocaris to Protocarididae as diagnosed here (see above) is provisional, as a study of this taxon and 170 its relatives is currently in preparation by the authors. The erection of Loricicaris34

Laterally preserved specimens (Fig. 1b–e and Extended Data Figs 2, 3) show that the body plan of 173 Tokummia is composed of three tagmata: an anterior “head” tagma (tagma I), including five appendages plus an 174 anteriormost bilobed structure; an intermediate “thorax” (tagma II) composed of up to 11 biramous appendages with 175 strong endopods and small exopods; and a terminal “post-thorax” (tagma III) made of ca. 40 biramous appendages 176 with gradually reduced endopods and dominant lobate exopods—we reserve the term abdomen for limbless portions 177 of the trunk. The transition from tagma II to tagma III, and therefore the relative sizes of these tagmata, is unclear, 178 but probably occurs around thoracic limb number 8. As suggested by the anatomy of Branchiocaris, in which stout 179 endopods are identifiable but present in association with lobate exopods showing no clear reduction in size (Fig. 2l 180 and Extended Data Fig. 7), the thorax of Tokummia and protocaridids in general may not be as strictly a defined 181 tagma as, for instance, the pereion of malacostracan crustaceans

in particular lacked justification 171 with respect to the morphological differences between this new genus and Protocaris, and awaits revision. 172

35

Tokummia exhibits a prominent anterior sub-triangular structure between the antennules, (Figs 1e, f; 2a-e 183 and Extended Data Figs 3a, 5a, b). Such a structure is also present in Branchiocaris pretiosa (Fig. 2a, c and 184 Extended Data Figs 6, 7a-d, 8a-d). These specimens corroborate the pre-oral position of the structure and the likely 185 presence of a bilobation underneath the main triangular component. Tokummia (Figs 1e, 2b, d and Extended Data 186 Figs 3a, 5a, b) and Branchiocaris (Extended Data Fig. 6) also show latero-basal “shoulders” behind the pair of 187 lobes. These were likely part of the frontal triangular element, forming a relatively large sclerotic plate which 188 corresponds to the “anterior sclerite” identified in other stem panarthropods

. 182

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Although the nature and orientation of lateral eyes are likely different in protocaridids, the bilobed organ 190 and its associated sclerite occupy the same frontalmost position as the inter-ocular sclerite present in other stem 191 arthropods, such as Canadaspis

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The labral complex of paratype ROM 63825 (Figs 1e, f, 2b, c and Extended Data Fig. 3a) constitutes one 198 the best evidence for the bilobed nature of the body protrusion underneath the protocerebral tergite or sclerite of the 199 ocular somite (TOS). On the part (Fig. 2b, c), preserved in dorsal aspect, a complex split of the TOS followed the 200 mesial margin of the labral protrusion beneath, onto which the right side of the sclerite was compressed (additional 201 cracks make it difficult to differentiate the sclerite from the protrusion distally). This interpretation comes from the 202 fact that this margin is symmetrical to that of an imprint on the left side, which belongs to another, lower lamina and 203 hence should be the remains of the body protrusion seen in other specimens (e.g. Fig. 2a, e, Extended Data Fig. 6). 204 Such infill of sediment between the left and right lobes would not be expected with a sclerite alone or if the fossil 205 had split through that sclerite. Thick carbonaceous remains similar to those seen inside adjacent appendages (Fig. 1f) 206 possibly represent protocerebral tissues connecting the labral complex to the central nervous system (see below). 207

. It may be distinct from the adjacent inter-ocular lobes, as both sclerite and lobes 192 are clearly disconnected structures in Canadaspis (Extended Data Fig. 9a-f). Accordingly, we interpret the so-called 193 “anterior sclerite” as the ocular/protocerebral tergite. The pre-oral topology of these frontal structures corresponds 194 with the upper lip of extant arthropods, the labrum, which is often associated with dorsal and antero-ventral sclerites, 195 as in Tokummia and Canadaspis. Whether an equivalent of a pre-oral sternite, i.e., a hypostome, was present in 196 protocaridids remains unclear to us. 197

The topology of the labral protrusions (Fig. 3) in protocaridids is in fact surprisingly reminiscent of the 208 epistemo-labral complex described in solifuges, scorpions and mites40. The latter structure is likewise composed of a 209 plate—the possible equivalent of the “anterior sclerite”—covering paired lips with fleshy and sclerotized 210 components. Those structures in chelicerates and mandibulates could therefore have a common origin. There is 211 evidence that the chelicerate labrum is in general bilobed in the early stages of development41

A frontalmost position of the labrum in protocaridids also suggests that its posterior migration post-dated 213 the evolution of the mandibulate head. Since the labral complex in protocaridids includes the inter-ocular sclerite 214 that we interpret as the protocerebral tergite (Fig. 2a, e and Extended Data Figs 5a, b, 7a-d, 8a-d), the hymenocarine 215 labrum was likely innervated by the protocerebrum—the anterior part of the panarthropod brain. Traces of neural 216 tissue in Lyrarapax were presented as evidence for the protocerebral identity of the anomalocaridid appendage

. 212

42, 217 which would have then been fused and reduced to become the euarthropod labrum. However, the anomalocaridid 218 affinities of the frontalmost appendage of Surusicaris, in conjunction with a ground-pattern cephalic configuration 219 typical of euarthropods in this taxon43, conflicts with this hypothesis. Our phylogenetic results further suggest that 220 the frontal appendages of Occacaris oviformis44 and Clypecaris serrata45 may well illustrate remainders of “great 221 appendage” morphologies among hymenocarine/stem mandibulate relatives. Thus, to us, the time and circumstances 222 of the proto- to deutocerebral appendage transition in panarthropods and the origin of the labrum remain a 223 conundrum. 224

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Alternatively, the frontal complex of protocaridids could generally correspond to that of hymenocarines, 225 with paired structures being appendicular or sensorial projections of the ocular somite43, as recently discussed in a 226 review of this topic46

A pair of large, rounded sclerotic elements is present posterior to the insertion of the antennules, in the area 242 of the stomodaeum in both Tokummia (Fig. 1c, 2d, f and Extended Data Fig. 5a) and Branchiocaris (Fig. 2e, k and 243 Extended Data Figs 6-8). This structure is much larger than posterior gnathal outgrowths and is never associated 244 with an endopod or an exopod. A long distal dentate margin is clear in both Tokummia (Fig. 2d, f) and 245 Branchiocaris (Fig. 2e and Extended Data 7a-c, 8), which, together with their shape and topology, identifies these 246 plates as mandibles in the mandibulate sense, with at least a well-developed pars molaris. In Branchiocaris 247 specimens from Utah (Fig. 2k and Extended Data Fig. 8), the gnathal edge is broad, ellipsoid, and covered in a 248 multitude of aligned ridges. The association of a rounded mandible without a distinct pars incisivus and such a 249 gnathal configuration is, in particular, reminiscent of the mandibular condition of branchiopod crustaceans

. In that paper, however, the examples chosen by the authors to illustrate homologous or 227 convergent frontal projections in extant taxa are almost exclusively immature specimens. This illustrates either that 228 the comparison with the adults of extinct species should implicitly assume heterochronic differences (in that case, a 229 peramorphic trend), or that these structures may not be comparable at all (as the authors themselves recognize). In 230 that later case, the argument that none of these structures are appendicular and/or related to the labrum is difficult to 231 hold, notably because of the problematic origin of the labrum described in the previous paragraph. Several of the 232 “Orsten” larval taxa (e.g. Rehbachiella, Bredocaris, Agnostus, Oelandocaris) also show bilobed pre-labral structures 233 interpreted originally as median eyes (interestingly fused to what could be the labrum in Agnostus). Given their 234 phylogenetic distribution (Fig. 4 and Extended Data Fig. 10), these structures may well represent a general 235 characteristic of larval anatomy across several clades. If, on the contrary, they correspond to the structures seen in 236 adult hymenocarines (in which labral structures would be unknown) and some trilobitomorphs, both their common 237 origin implied by this hypothesis and their general absence in the adults of extant lineages would remain 238 unexplained. The evolution of labral structures in crown euarthropods may also have been more complex than 239 previously thought, and the hypostome-labrum may have formed in the various lineages from different combinations 240 of sclerites and projections ultimately originating from the protocerebrum. 241

47-49

Characteristically strong chelate appendages, whose peduncles protrude in front of the animal, are inserted 256 well behind the mandibles (Fig. 1 and Extended Data Figs 1-5). Branchiocaris specimens show two pairs of small 257 appendages present in the area between the mandibles and the chelate appendages (Fig. 2j, k and Extended Data Fig. 258 8e, f); the gnathobases of these smaller limbs are preserved immediately posterior to the mandibles in Tokummia 259 (Fig. 2d, f and Extended Data Fig. 5a). These appendages bring the number of head pairs, excluding the labrum, to 260 five, which is a mandibulate synapomorphy, and can, therefore, be called maxillule and maxilla, whereas the chelate 261 appendages constitute the first pair of maxillipeds. 262

. 250 Because these gnathal elements are placed directly behind the antennules, they should belong to the appendages of 251 the second segment (the crustacean A2), but their typical mandibular morphology, the absence of similar gnathal 252 pieces on the antenna of crustaceans and the remaining anatomy of the cephalon has led us instead to invoke the 253 presence of an intercalary segment (see main text). Lateral to the mandibles are highly reflective spots that may 254 correspond to lateral eyes (Fig. 1a), which would be atypically posterior in protocaridids. 255

The chelate appendages differ in the morphology of the chela proper but share the same number of 263 podomeres with Branchiocaris, that is, seven instead of the five originally described. In Tokummia, the peduncle 264 articulates with two elongate articles: a movable inner/upper article, or dactyl, with curved, dented tip; and an 265 outer/lower article, or pollex, ending in a pair of strong teeth (Fig. 1a, e–g and Extended Data Figs 3-5). Dark 266 carbonaceous impressions similar to those described in the appendages of Yawunik32 are present in both the 267 peduncle of the chela—branching into each article—and the antennules (Fig. 1a, e–g and Extended Data Figs 1, 3, 268 4). Their presence in both appendages (as well as at the base of the labral complex) suggests that their interpretation 269 as nerves and possibly ganglia is correct32

The maxillipede chelae, particularly large in Tokummia, are surprisingly convergent with the chelifores of 271 certain early pycnogonid larvae, including Pycnogonum

. 270

50, Achelia51 and Nymphon52. Reasons for this resemblance, 272 other than parallelism, would be difficult to justify unless there were dramatic appendage losses or gains at the 273 origin of chelicerates or mandibulates. This is not directly suggested by Hox gene alignments53, despite a strong 274 difference in overlap of anteriorly expressed Hox genes between the clades. The contrasting presence of annulated 275 exopods, annulated caudal rami, and post-oral gnathobases in the larva of the Cambrian pycnogonid 276 Cambropycnogon54, point rather to the existence of a radiative event that included the co-occurrence of 277 cheliceromorph and crustaceomorph characters. Convergences of both body plans, well illustrated by the 278 “Arachnomorpha” versus “Antennulata” debate32, are also due to the fact that typically crustaceomorph features are 279 tied to an aquatic lifestyle and likely pre-dated the rise of panmandibulates. Bipartite tailpieces, for instance, such as 280

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caudal rami and uropod-like modified posterior limbs, may be found in arachnomorphs (e.g. Sidneyia55), and 281 megacheirans (e.g. Fortiforceps36

The following appendages are biramous. The basipods of tagma II are five-segmented, with each segment 285 bearing a spinose endite (Fig. 2d, f, g and Extended Data Fig. 5a). As noted by Walossek

), as well, even if likely analogous to those known in extant taxa. To some extent, 282 the ancestral nature of aquatic adaptations also applies to enditic outgrowths on trunk limbs, as they are involved in 283 current-based types of food processing and are present in all euarthropod clades containing aquatic taxa. 284

56, an endite-bearing 286 segmented basipod is also present in Canadaspis and most likely in Odaraia (Extended Data Fig. 9g, h). A basipod 287 with multiple endites is also a feature of certain crustaceans and crustaceomorphs, and characterizes notably the 288 phyllopodous limb of branchiopods and phyllocarids. Branchiopod larvae and especially those of notostracans57 289 display trunk limbs that, in the very early stage of their formation, are composed of rows of rounded, spinose endites 290 very similar to those on the basipods of Tokummia. Within tagma II, the endopods are composed of seven strong 291 podomeres, thus the interpretation of poly-segmented endopods in those taxa58 is a misinterpretation of the basipod. 292 These limbs are heptopodomeran sensu Aria et al.32

Distally, the endopods of tagma II form a complex made of the pair of distalmost claws and the pair of 296 claws borne by the antepenultimate podomere. Paired elongate spines produced from the upper distal podomere 297 endites characterize Sidneyia

. Whether a multi-segmented basipod also exists in fuxianhuiids, 293 euthycarcinoids and multi-segmented megacheirans could be difficult to determine if the supernumerary podomeres 294 arose by the effacement of distinctive basipod margins. 295

55,59 and Canadaspis39, but also leanchoiliids32,60, Agnostus in its meraspis stage61, and 298 the walking legs of certain eurypterids62. In Sanctacaris, such claws are complemented by a third, median spine63

Posterior appendages (tagma III), gradually reduced in size so as to become minute, have a dominant 304 exopod whose folding during preservation and absence of structure is reminiscent of the phyllopodous exopod of 305 branchiopod crustaceans. A large basis similar to appendages of tagma II is present at the base of those limbs within 306 at least the first third of tagma III (Figs 1e, 2m and Extended Data Fig. 1). Branchiocaris (Fig. 1n) illustrates the 307 presence of frail stenopodous endopods associated with these exopods. 308

. In 299 laterally-preserved Tokummia specimens (Fig. 1b, d and Extended Data Figs 1, 2), posterior exopods abruptly cease 300 jutting out below the carapace ventral margin at the posterior end of tagma II, which suggests a distinct reduction in 301 exopod size. The attachment margin of the exopods in this area is distinct, but the distal morphology remains 302 uncertain. 303

The tailpiece is composed of a tergal plate that seems to cover additional segments (Fig. 1b and Extended 309 Data Figs 1, 2) and the base of two annulated rami attached underneath the plate to the anal segment (Fig. 1a, b and 310 Extended Data Figs 1a, b). These rami are therefore caudal rami in the pancrustacean sense, as defined by Schram35

312 . 311

313 OTHER TAXA POSSIBILY RELATED TO HYMENOCARINA AND THE SIGNIFICANCE OF FOSSIL 314 LARVAE 315 316 Archaeostracans represent another prominent group of large bivalved arthropods during the Palaeozoic that have so 317 far been considered as relatives to phyllocarid malacostracans64. Our phylogenetic resolution of two of the best 318 known archaeostracans, Cinerocaris and Nahecaris, supports a close affinity of at least some archaeostracans with 319 leptostracans and other malacostracans (Extended Data Fig. 10). This result means that phyllocarid crustaceans, such 320 as Nebalia have retained or converged on plesiomorphic characteristics of the hymenocarine body plan (e.g. 321 bivalved carapace, tergo-pleural rings). Notostracan branchiopods show the greatest similarities with protocaridids 322 in their multisegmented trunks, annulated caudal rami and arrangement of trunk limbs—giving to the trunks of 323 Tokummia and Branchiocaris preserved ventrally a typical notostracan aspect. Striations on the masticatory margin 324 of the mandibles in Branchiocaris is another characteristic documented in branchiopods65

As in hymenocarines, limbs with a high number of podomeres in general also characterize 330 Euthycarcinoidea sensu lato, a clade including fuxianhuiids, which here represent the mandibulate stem, even if the 331 distinction between basipod and endopod is not clear in either euthycarcinoids sensu stricto or fuxianhuiids 332 (fuxianhuiids are generally considered lacking a basipod

. Other details of the 325 stomodeal area, maxillule and maxilla in protocaridids, however, are insufficiently known to make further 326 comparisons. The proximal morphology of maxillule and maxilla (dentate coxae), the morphology of the antennules 327 (short, robust, annulated, uniramous) and absence of antenna constitute nonetheless considerable differences 328 between protocaridids and branchiopods/leptostracans. 329

36,66). Since they were first described, fuxianhuiids have 333 been considered by many to be basalmost arthropods37,58,67, even in the absence of polarization among dinocaridids 334 or isoxyids for their alleged plesiomorphic traits, i.e. “two-segmented” heads and poly-segmented trunk limbs. The 335 five endopods and tergites following the chelate appendage in fuxianhuiids are in fact clearly differentiated from 336

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those of the trunk37,66 (being shorter, uniramous, or both), and hence arguably belong to the cephalic tagma. 337 Following this interpretation, our phylogenetic result reinforces previous views68 comparing fuxianhuiids with 338 euthycarcinoids, despite the lack of mandibles and peculiar head configuration of the former37. The presence of three 339 nested optic neuropils in Fuxianhuia69 also supports a more derived placement for this group70. Euthycarcinoids s.s. 340 have traditionally been difficult to resolve systematically, but multipodomerous, uniramous endopods and mandibles 341 are now well-documented characters, as well as the presence of antennular frontal appendages71-73. Importantly, 342 several euthycarcinoid species show a decoupling between sternite (and appendages) and tergite numbers, a trait 343 seen in myriapods and notostracans but also in fuxianhuiids (see char. 150 and 151 below). The Argentinian 344 Apankura described by Vaccari et al.73

We do not find support for other taxa to constitute the mandibulate stem. Contrary to a previous study

also seems to possess smaller post-mandibular appendages that could be part 345 of the cephalon. 346

74, we 347 find here that Marrella has no clear character diagnostic of total-group Mandibulata. Instead, we find that Marrella 348 is sister taxon to Mandibulata sensu lato+Chelicerata sensu lato (Extended Data Fig. 10). As such, marrellomorphs 349 could be representatives of the early differentiation of the tritocerebral (=post-antennular) appendage. By contrast, 350 most Orsten-type larval taxa resolve as crown tetraconates, in accordance with a previous study75, but some of these 351 species, such as Bredocaris76 or Rehbachiella77, show extensive morphological similarities with protocaridids (and 352 hymenocarines in general). These include the bivalved carapace, the tergo-pleural rings, the bipartite tailpieces, the 353 annulated antennules, the mandibles, and most notably their subdivided, enditic basipods. The ontogeny of 354 Rebachiella77 in particular revealed a mandible that was not only “gnathobasic” in a broad sense—this hypothesis 355 received developmental support via the study of Distal-less expression patterns78—but also originated from a pre-356 basal, or coxal segment homologized with reduced pre-basal elements, termed “proximal endites”77. Limb 357 morphology in adult protocaridids and other hymenocarines (i.e. subdivided basipod with heptopodomeran 358 endopod) thus corroborates that a subdivided basis was the plesiomorphic condition that allowed for the evolution of 359 the coxa and the mandible, possibly via the fusion of several basal endites. The antero-posterior morphology of 360 appendages in Bredocaris76 is also consistent with this view. These interpretations support to a great extent the 361 hypothesis79 that one or more of these additional basal segments were to become the proximal pleurites of 362 myriapods, malacostracans and insects80

Other larval taxa, however—Agnostus’ meraspis, Oelandocaris and other leanchoiliidomorph larvae 364 (Extended Data Fig. 10)—are retrieved among stem groups. They all represent early ontogenetic stages that display 365 morphological differences from the adults of related taxa, and all likewise exhibit features interpreted as 366 crustaceomorph

. 363

81. Those morphological traits are mainly antennulate frontal appendages, stenopodous exopods and 367 large, anterior labral structures. Given that at least those fossil larvae are unlikely to be directly related to 368 crustaceans, this means that the concerned clades (leanchoiliid megacheirans and artiopods) had developed 369 ontogenetic niches from which crustacean-like morphologies evolved. This situation further suggests that some 370 mandibulate traits may have later emerged through paedomorphosis, and, overall, that the separation of niches 371 occupied by adults and juveniles played a role in the accelerated evolution taking place at the origin of extant 372 clades82. Heterochrony could have been a strong evolutionary driver, especially if the development of stem 373 arthropods was less canalized than that of crown ones83,84

375 . 374

376 PHYLOGENETIC ANALYSIS—METHODOLOGICAL NOTES 377 378 General comments 379

The following list of characters and corresponding dataset (Supplementary Dataset 1) are part of a work on 380 panarthropod morphology started in 2010 and continuously updated. It was initially based on the works of Briggs 381 and Fortey85, Waggoner86, Fortey et al.87, Wills88,89, Edgecombe and Ramsköld90, Budd67, Cotton and Braddy91, 382 Hendricks and Lieberman92, Kühl et al.93, and Daley et al.94. It has been modified and updated to include the works 383 of Stein and Selden95, Legg et al.58, Briggs et al.96, Ortega-Hernández et al.97, and Lamsdell98. Additional 384 morphological information on extant taxa was gathered from other sources35,99-103, especially Rota-Stabelli et al.104 385 (RS2011 hereafter), which itself relies heavily on the works of Edgecombe et al.105, Giribet et al.106, and 386 Edgecombe107. Contrary to, e.g. Legg et al. 58, we have not implemented the entire dataset of RS2011 in our matrix, 387 in order to avoid a massive addition of uncertainties in fossils. It has been shown that the effect of missing data was 388 a factor of missing entry proportion as well as total taxon number (e.g. Prevosti and Chemisquy108), which mostly 389 generates polytomies by collapsing nodes on the basis of an excess of possible, equally valid states. Although the 390 issue of taxon incompleteness can be circumvented by character exhaustiveness 109, this does not apply to our matrix 391 because of its relatively small size, and would only by worsened by adding quantities of extant-only characters 392

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coded as missing entries for fossils. We limited the input of characters difficult or impossible to code for fossils to 393 the major synapomorphies supporting the topology of Rota-Stabelli et al., including a large portion of the 394 neurological evidence that has recently become available through pioneering work on Cambrian taxa110. It should 395 also be noted that certain characters in RS2011 pertain to different changes to the same morphological structures, 396 and it is not always clear whether those changes were the results of different evolutionary events—possibly creating 397 redundancy. We complemented our analysis by adding phylogenetic signals from molecular data, in the form of a 398 “backbone constraint,” based on the topology from Regier et al.111. In keeping with previous observations of the 399 behavior of phylogenetic analyses of panarthropods32, we treated inapplicable states as missing data but tried to 400 optimize the dataset by creating a sovereign32

We have limited our sample of large bivalved arthropods from the Cambrian to the best known taxa—403 Branchiocaris, Canadaspis, Odaraia and, now, Tokummia. Two other well-preserved taxa in particular were not 404 included due to revisions needed or ongoing. Nereocaris, first, was presented as providing evidence on the origin of 405 arthrodization, but very little was in fact shown from its limb morphology (see fig. S2 in Legg et al.

character for each multistate character describing a different 401 homologous structure. 402

58), and most of 406 its anatomy, especially cephalic, remains unresolved. This taxon will have to be revised in light of the information 407 provided here, and its phylogenetic position retested accordingly. The second of these taxa, Waptia, could have 408 reinforced the placement and monophyly of Hymenocarina, as it has recently been interpreted as a mandibulate with 409 an intercalary segment112

We have implemented larval taxa based on the morphology of the latest developmental stage known (in 412 Pycnogonum

, but the study was based on a limited number of specimens and left the exact morphology 410 of some features as conjectural. A reexamination of Waptia using all material available is currently in progress. 411

50, we took into account the presence of the reduced appendages 2 and 3, even if they are lost in later 413 stages). We acknowledge the general criticism of Sharma et al.113 that the implementation of a selection of 414 semaphoronts at different life stages altogether with adult morphologies may not be ideal from a Hennigean point of 415 view. However, without discussing the issue further here, our results are consistent either with previous analyses75

423

416 (Orsten crustaceomorphs) or with the original identification of these larvae (leanchoiliid larvae, Cambropycnogon), 417 and otherwise illustrate our point about the importance to consider possible differences in morphology between 418 larvae and adults (Agnostus meraspis stage). We do recognize the weight of heterochronic effects on such an 419 approach and we leave here the case of Orsten-type larvae resolved as crustaceans to be ambiguous: it remains 420 possible that they represent larvae of much more ancestral taxa which would display overall morphologies optimized 421 as derived. 422

The disparity of our sources forced us to often use several representative genera for higher taxonomic 424 levels, rather than just one genus per major group. This is also the reason why we did not include the individual 425 genera in our analysis. The list of representative taxa is as follows: 426

427 Nematoda: Caenorhabditis 428 Priapulida: Priapulus 429 Tardigrada: Stygarctus, Hypsibius, Milnesium 430 Onychophora: Peripatus, Euperipatoides 431 Leanchoiliidae: Alalcomenaeus, Leanchoilia, Yawunik. 432 Pycnogonida: Pycnogonum, Flagellopantopus, Endeis, Colossendeis, Ammotheidae 433 Araneae: Cupiennius, Mygalomorphae 434 Scorpiones: Scorpio, Scorpionidae 435 Opiliones: Phalangium, Siro, Nipponopsalis, Equitius 436 Euthycarcinoidea: Synaustrus, Apankua, Kottyxerxes, Sottyxerxes 437 Pauropoda: Pauropus, Pauropodinae 438 Symphyla: Scutigerella 439 Chilopoda: Lithobius, Scutigera, Scolopendra 440 Diplopoda: Illacme, Glomeris, Proteroiulus, Polyxenus 441 Copepoda: Mesocyclops, Archimisophria 442 Cephalocarida: Hutchinsoniella 443 Remipedia: Speleonectes, Lasionectes 444 Isopoda: Porcellio, Phreatoicus, Oniscidea 445 Euphausiacea: Meganyctiphanes, Euphausia, Bentheuphausia, Stylocheiron 446 Anaspidacea: Anaspides 447 Stomatopoda: Squilla, Harpiosquilla, Erugosquilla 448

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Leptostraca: Nebalia, Paranebalia 449 Zygentoma: Thermobia, Lepismatidae 450 Odonata: Libellula 451 Coleoptera: Tribolium 452 Diptera: Drosophila 453 Hymenoptera: Pseudomyrmex 454 455 456 Comparison of topologies 457 Topologies complementary to the cladogram in the main text (Fig. 4) are provided in Extended Data Fig. 458

10. 459 When removing the larval/juvenile taxa (Extended Data Fig. 10D), the topology remains largely 460

unchanged, but all most parsimonious trees retrieve in this case monophyletic Hymenocarina and Euthycarcinoidea 461 s. l. clades as sister groups to mandibulates. The fact that the consensus tree of the total dataset (Extended Data Fig. 462 10C) resolves hymenocarines as a polytomy is therefore a likely consequence of the addition of larval taxa, which 463 provide, as expected, a phylogenetic signal conflicting with adult species. 464

Under an unconstrained analysis (without backbone; see Extended Data Fig. 10E), the general basal 465 topology remains the same but hexapods and myriapods are resolved together as Atelocerata within mandibulates. 466 As a result, Orsten-type crustaceomorph taxa are resolved as a stem-mandibulate grade, similarly to a recent 467 phylogenetic analysis using implied weighting114, although the latter supported Tetraconata owing to its use of the 468 full dataset in Rota-Stabelli et al.104

Due to the fact that we separated many characters in arthropods and lobopodians by coding them as 475 inapplicable to one another, the very base of the tree is inconsistent between cladograms, and nodes are poorly 476 supported within the same analysis. We therefore refrain from discussing lobopodian/onychophoran/tardigrade 477 relationships in this study, although these taxa, as well as dinocaridids, are important for the polarization of some 478 characters. 479

. Interestingly such a configuration also optimizes hymenocarines as allied to 469 ostracods and branchiurans in Oligostraca, and, therefore, as pancrustaceans, while fuxianhuiids become sister group 470 to chelicerates. That hymenocarines group here with some other bivalved crustaceans would cause an even greater 471 contrast with recent interpretations and come much closer to the originally suspected crustacean affinities, but given, 472 first, that this topology is not consistent with Tetraconata and, second, that the unconstrained topology is still very 473 susceptible to changes in the matrix, we leave this result to further research. 474

480 481

482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504

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CHARACTER LIST 505 506 GENERAL CHARACTERS 507 508 [1] Limbs 509

0. Absent 510 1. Present 511

512 [2] External cuticular segmentation 513

0. Absent 514 1. Present 515

516 [3] Type of segmentation 517

0. Sclerotized 518 1. Arthrodized (=tergal) 519

520 Remark: The integumental subdivision of anomalocaridid bodies remains unclear beyond the absence 521 of tergites. Based on Opabinia115, but also Schinderhannes93 and isoxyids43

525

, it seems that external 522 segmentation is present, replacing annulation, but that these segments are not articulating tergites. 523 Arthrodization throughout refers to the presence of sclerites articulating via arthrodial membranes. 524

[4] Calcified cuticle 526 0. Absent 527 1. Present 528

529 [5] Calcification type 530

0. Calcium phosphate 531 1. Calcium carbonate 532

533 [6] Holometaboly 534

0. Absent 535 1. Present 536 537

Remark: Apomorphy of Holometabola/Endopterygota. Inapplicable outside hexopods. 538 539 540 LOBOPODIAN CHARACTERS 541 542 [7] External anteriorization restricted to a single pair of ocular appendages 543

0. Absent 544 1. Present 545

546 Remark: Various lobopodians, such as luolishaniids and “hallucigeniids,” had evolved the 547 differentiation of more than one pair of anterior limbs, which contrasts with the primary involvement 548 of the first axial pair in Aysheaia, Onychodictyon, large forms such as Megadictyon and dinocaridids. 549 We coded 0 for isoxyids and euarthropods, given that these taxa display a head tagma involving 550 several limbs pairs (see char. 31). 551

552 [8] Lobopodous limbs 553

0. Absent 554 1. Present 555

556 Remark: This character codes for the presence of any annulated limbs in the onychophoran sense, 557 defining the “lobopodian” group of taxa. There has been a debate regarding the presence of lobopodous 558 limbs in Opabinia115-117. Consistently with some of our earlier observations43, we regard the striated 559

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traces interpreted as lobopods in Opabinia as partially internal structures that connect to the gill blades. 560 Lobopodous limbs are also coded as present in Surusicaris. 561

562 [9] Type of main lobopodous trunk limb 563

0. Short, conical, subequal or shorter than trunk width 564 1. Elongated, slender, longer than trunk width 565 566

Remark: The existence of long-legged morphotypes, as opposed to short-legged morphotypes, has been 567 recognized before among lobopodians, e.g. Haug et al.118

574

. We concur with this distinction, regardless 568 of limb differentiation along a single body plan. However, while Hallucigenia spp. and onychophorans 569 most clearly characterize those two different states, Onychodictyon and Aysheaia represent the limits of 570 the dichotomous separation, as differences in length and shape in these taxa are greatly reduced. A 571 morphometric analysis of lobopod shape across genera could help redefine this a priori important 572 character. 573

[10] Flap-like lateral limbs 575 0. Absent 576 1. Present 577

578 Remark: Soft, lobate flaps are diagnostic of dinocaridids. We assume here that phyllopodous exopods 579 are unrelated to them, and remain agnostic about their relation to lobopods proper. 580

581 [11] Nodes/tubercles/dermal papillae 582 0. Absent 583 1. Present 584 585

Remark: We consider the tubercles on the integument of onychophorans and a number of lobopodians 586 to be homologous. We code them as absent in hallucigeniids, as there is not, to our knowledge, clear 587 evidence of nodes or tubercles on the annuli/plicae of these taxa. At the very least, these structures are 588 sufficiently reduced or modified to justify the coding of a different state. 589

590 [12] Differentiation at limb insertion 591

0. Absent 592 1. Present 593

594 Remark: This character is applicable only to lobopodians because it is incompatible with segmentation. 595 It designates in these taxa any differentiation of the integument at the location of limb insertions (and 596 the corresponding body ring, but not necessarily the entire metamere), whether an interruption in the 597 annulation pattern or the presence of cuticular outgrowths. Although there is evidence for 598 differentiation at limb insertion in the form of anastomosing plicae in certain onychophorans119

601

, the 599 interruption of the annulation pattern is only partial, and we therefore code 0 for all onychophorans. 600

[13] Dorso-lateral sclerites above limb insertion 602 0. Absent 603 1. Present 604

605 Remark: This character and all following dependencies are applicable only to lobopodians. It could be 606 hypothesized that lobopodian sclerites are developmentally and evolutionarily related to arthropod 607 sclerites120

610

. We opted here for a neutral coding and differentiated this character from the possession of 608 tergites/sternites proper. 609

[14] Median spine above limb insertions 611 0. Absent 612 1. Present 613

614 Remark: Armoured luolishaniids possess an additional row of median spines121-123. 615

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616 [15] Lobopod tip (main trunk limb) 617

0. Double claw 618 1. Juxtaposed series of claws 619 2. Pad 620

621 Remark: As previously stated123, the pad/foot of onychophorans is a very peculiar autapomorphy of this 622 group. The arrangement in multiple juxtaposed claws of tardigrades, however, is also observed in 623 Aysheaia and Diania. The condition in Luolishania has been the subject of debate 121,124-126

626

, and we code 624 it here as uncertain. 625

[16] Posterior-most single claws 627 0. Absent 628 1. Present 629

630 Remark: Yang et al. 2015123 noted that single claws seem to characterize the posterior limbs of a 631 number of luolishaniids and hallucigeniids. After reevaluation of the available evidence, we largely 632 concur with the validity of this character, in spite of the taphonomic uncertainty related to the exact 633 count of claws. The evidence is particularly strong in Hallucigenia sparsa127

636

, with dozens of specimens 634 corroborating the observation. 635

[17] Posterior claws pointing anteriad 637 0. Absent 638 1. Present 639

640 Remark: As discussed by various authors128,129, a number (to us, a majority) of lobopodians share with 641 tardigrades an anterior orientation of the posteriormost claws. It is especially clear and consistent 642 across specimens of Aysheaia130 and Hallucigenia127

644 , rejecting a taphonomic origin of this condition. 643

VISUAL ORGANS 645 646 [18] Ocelli as primary ocular units 647

0. Absent 648 1. Present 649

650 Remark: We have grouped all ocular features known in lobopodians under the single denomination of 651 ocelli, grouping all types made of one or several visual units131

654

. Euarthropod ocelli or median eyes as 652 secondary visual organs are coded in character 18. 653

[19] Median eyes 655 0. Absent 656 1. Present 657

658 Remark: We code phosphatocopines and ostracods with median eyes instead of lateral eyes. In ostracods in 659 particular, molecular studies have suggested that their compound eyes were not homologous to the lateral 660 eyes of other arthropods132

662 . 661

[20] Number of median eyes 663 0. 2 664 1. 3 665 2. 4 666

667 [21] Rhabdomeric lateral eye 668

0. Absent 669 1. Present 670

671

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[22] Type of lateral eyes 672 0. Simple lens with cup-shaped retina 673 1. Faceted (compound) 674 2. Stemmata 675

676 Remark: Character from RS2011 #95. 677

678 [23] Type of corneagenous cells 679

0. Many 680 1. Two 681

682 Remark: Character from RS2011 #101. 683

684 [24] Tetraconate condition 685

0. Absent 686 1. Present 687

688 Remark: This character codes for the tetrapartite crystalline cone forming the ommatidia of crustaceans 689 and insects. Tetraconata is a synonym for Pancrustacea. 690

691 [25] Number of nested optic neuropils 692

0. 1 693 1. 2 694 2. 3 695

696 [26] Multi-layered rhabdomeres 697

0. Absent 698 1. Present 699

700 Remark: This character is diagnostic of chilopods and diplopods 133

702 . 701

[27] Eyes embedded within tergal shield 703 0. Absent 704 1. Present 705

706 [28] Opthalmic ridges 707

0. Absent 708 1. Present 709

710 [29] Lateral eyes pedunculate 711

0. Absent 712 1. Present 713

714 [30] Pedunculate eyes projecting frontalward, large and ovate 715

0. Absent 716 1. Present 717

718 Remark: The pedunculate lateral eyes of a number of euarthropods are distinctly ovoid and protruding 719 forward, with their peduncles attaching to the anteriormost portion of the head, sometimes semi-720 detached from the remainder of the cephalon (as in fuxianhuiids134, euthycarcinoids73, Odaraia135 and 721 generally in anostracans136

723 ). 722

724 HEAD AND CEPHALIC CHARACTERS 725 726 [31] Somital head (as tagma I) defined by series of appendages and/or external segmentation 727

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0. Absent (only anteriormost defines head) 728 1. Present 729

730 Remark: It has not always been accepted that the euchelicerate prosoma could be called a head, as 731 opposed to a cephalothorax137, but since such a condition would be an apomorphy equivalent to coding 732 a state for six pairs of prosomal limbs in the anteriormost tagma, we adopt the latter approach. The fact 733 that a cephalon with six pairs appendages could not be called a head, however, seems contradicted by 734 Sanctacaris43,63,138

737

. Lobopodians with a prominent pair of anterior appendages lack a head tagma per 735 se, in contrast to e.g. Surusicaris. The presence of head tagmata in dinocaridids is uncertain. 736

[32] Somites defining anteriormost tagma 738 0. 5 739 1. 6 740 2. 7 741 3. 9 742

743 Remark: This character codes for the traditional conception of the arthropod head in fossils and extant 744 taxa. State 3 (9 somites) is reserved as an autapomorphy for the specific case of the Pycnogonum larva. 745 Sanctacaris and fuxianhuiids are coded as uncertain. Note that we coded state 1 for all mandibulates, 746 although certain taxa such as crustaceans with cephalothoraces transcend this plesiomorphic condition. 747 Their condition is addressed in char. 38. 748

749 [33] Tergal sclerotization of the post-ocular somite 750

0. Absent 751 1. Present 752

753 Remark: This character accounts for the presence a post-ocular tergite, whether a shield or carapace, 754 excluding “anterior sclerites” (see char. 127). 755

756 [34] Tergal sclerotization type 757

0. Tergites with posterior expansion, some cephalic tergites can be freely articulating (carapace) 758 1. Tergites with limited expansion, cephalic tergites fused (shield) 759

760 [35] Carapacal valves 761

0. Bivalved 762 1. One plate 763

764 Remark: State 1 applies to univalved crustaceans but also to Burgessia. The bivalved condition is 765 represented by a medial fold with a variable separation of the valves per se (see char. 35). 766

767 [36] Bivalved configuration 768

0. Unfused along most of dorsal margin 769 1. Fused along most of dorsal margin 770

771 Remark: The state of fusion of the carapacal valves has been briefly discussed in different papers (e.g. 772 139

775

), but a review of this character is in progress. We consider the valves of Canadaspis and Waptia to 773 be loosely attached to one another relative to, e.g., the protocaridid carapace. 774

[37] Covering of the bivalved carapace (when body fully extended antero-posteriorly) 776 0. At least two thirds of body length 777 1. Cephalothorax 778

779 [38] Cephalothorax 780

0. Absent 781 1. Present 782

783

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Remark: The term cephalothorax designates the association of posterior appendages with the somital 784 head in different arthropod clades to form a coherent functional unit. 785 786

[39] Articulation of posterior margin of shield with first trunk segment 787 0. Tergal overlap 788 1. Closure 789

790 Remark: In general, shields either articulate with the first trunk segment through overlapping tergites or 791 form a closed occipital margin with limited freedom of movement. 792

793 [40] Segmental impression in shield 794

0. Absent 795 1. Present 796

797 [41] Occipital lobe 798

0. Absent 799 1. Present 800

801 [42] Pair of occipital carinae 802

0. Absent 803 1. Present 804

805 [43] Anterior reduction of segments and/or appendages 806

0. Absent 807 1. Present 808

809 Remark: The length of anteriormost tergites and appendages can be dramatically reduced compared to 810 posterior segments. This is a feature shared notably among mandibulates. 811

812 [44] Cephalic compaction 813

0. Absent 814 1. Present 815

816 Remark: In addition to the reduction of segments and appendages, cephalization is sometimes 817 associated with the extreme reduction of the cephalic shield in a distinct anteriormost unit. This 818 condition characterizes, for instance, insects, but also isopods. We implement it for its potential 819 importance as a “local” synapomorphy. 820

821 [45] Doublure 822

0. Absent 823 1. Present 824

825 [46] Cephalic kinesis 826

0. Absent 827 1. Present 828 829

Remark: From RS2011, char. 88. 830 831 BRAIN CHARACTERS 832 833 [47] Ganglia of post-oral appendages fused into single nerve mass 834

0. Absent 835 1. Present 836

837

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Remark: From RS2011, char. 64. We do not regard the condition of leanchoiliids140 to be equivalent to 838 that of euchelicerates, owing to the difference in head configuration and development of trunk limbs. 839 We code 0 for fuxianhuiids following Yang et al.141

841 . 840

[48] Contiguity of the first two post-protocerebral ganglia 842 0. Absent 843 1. Present 844

845 Remark: Deuto- and tritocerebral ganglia in a number of mandibulates are generally forming a 846 contiguous mass, separate from more posterior ganglia142,143, which suggested the notion of “tripartite” 847 brain in these taxa (see, e.g. Edgecombe et al.105, char. 44). This appears to be the case also in 848 leanchoiliids140

851

, despite the fact that Tanaka et al. identified this mass as the single ganglion of the 849 “great appendage.” 850

[49] Fan-shaped body in brain 852 0. Absent 853 1. Present 854

855 Remark: From RS2011, char. 66. See also Strausfeld144

857 . 856

[50] Position of midline neuropil 858 0. Superficial to protocerebrum 859 1. Embedded within protocerebral matrix 860

861 Remark: From RS2011, char. 69. 862

863 [51] Olfactory lobes linked to a lateral component of protocerebrum by olfactory globular tract 864

0. Absent 865 1. Present 866

867 Remark: From RS2011, char. 73. 868

869 [52] Deutocerebral olfactory lobe with glomeruli 870

0. Absent 871 1. Present 872

873 Remark: From RS2011, char. 80. 874

875 [53] Protocerebral bridge 876

0. Absent 877 1. Present 878

879 Remark : From RS2011, char. 78. 880

881 882 STERNITES (CEPHALON) 883 884 [54] Sternites 885

0. Absent 886 1. Present 887

888 Remark: We made this character dependent upon evidence for segmentation. Some have claimed that 889 sternites were absent in fuxianhuiids, see e.g. supplemental material in Yang et al.123, but they are 890 clearly present in Shankouia66, Fig. 1E and likely present in Fuxianhuia (Chen et al.134 and fig1F,L in 891 Bergström et al.145). Yang et al.123 cite Chen et al.134 as supporting their view that sternites are absent in 892

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fuxianhuiids, whereas Chen et al. in fact describe “abdominal sternites [that] connect with the tergites 893 laterally, producing a closed casing for the abdominal soft parts.” 894

895 [55] Endosternum 896

0. Absent 897 1. Present 898

899 Remark: From RS2011, char. 259. The endosternum is a strong euchelicerate apomorphy. The 900 condition in pycnogonids146

902 is left as uncertain. 901

[56] Hypostome 903 0. Absent 904 1. Present 905

906 Remark: There has been much discussion about hypostomes147,148, as they arguably represent an 907 evolutionary benchmark along the arthropod tree. In crustaceans, the hypostome, or pre-oral sternite, 908 can be associated with an outgrowth called the labrum. The labrum develops as a pre-oral fold, with its 909 Anlage sometimes developed ontogenetically into a pair of buds137. Some (e.g. 149) have insisted on the 910 distinct nature of the labrum; this distinction is correct, even if both structures belong to the same pre-911 oral area and are sometimes difficult to discriminate. We emphasize here the nature of the hypostome 912 as a sclerotic plate. In malacostracans, this structure forms a distinctly bipartite complex called the 913 epistome-labrum, and can extend significantly posteriorly behind the second antennal pair. In 914 chelicerates, the terms labrum, hypostome and epistome have been regularly used interchangeably to 915 designate the pre-oral sclerite, but Dunlop40

Starting with the description of Fuxianhuia protensa

specifically designated the labrum as a lip-like structure 916 belonging to the Solifugae, Pseudoscorpiones, Acari and possibly Opiliones; in this case, however, the 917 sclerotic element associated with the labrum is more likely a tergite than a sternite, as in the composite 918 “labrum” of scorpions (see char. 110). In myriapods and insects, the hypostome-labrum complex is 919 usually referred to as a “clypeo-labrum,” “epipharynx,” or likewise “epistome-labrum.” We construe 920 that the clypeus of terrestrial mandibulates integrates the epistome (in crustaceans) and hypostome. In 921 this study, we homologize pre-oral plates as sternites of the second segment, and we use the word 922 labrum to refer to structures originating from the anteriormost somite. Further studies are needed to 923 determine whether the hypostomes of stem arthropods are always sternites of the second head segment 924 or whether they can be sternites of the first segment. The current scenario implies events of migration 925 of the ocular labrum from ventrally anterior to ventrally posterior to the pre-oral sternite. 926

36, there have been numerous claims about the 927 presence of a hypostome in fuxianhuiids, including in a recent study of the head of these animals37. 928 However, we have found no evidence for the presence of a hypostome in any of the available 929 documentation, including in the description of Shankouia150 and the high quality imagery of the 930 anterior cephalic area in the brain study of Fuxianhuia69. In Yang et al. 37, lines labeled “hyp” never 931 point to a clear structure or a structure distinct from the inter-ocular sclerite. Chen et al.134

As discussed in a previous study

made a 932 better case for a post-frontal plate, but since the area under the cephalic shield in specimen 19255b is a 933 negative imprint, it is questionable whether the “anteroventral plate” is a remainder of the carapace. It 934 seems likely, however, that the “specialized post-antennal appendages” had corresponding sternites, 935 and their para-oral insertion would imply that these sternites would form a plate covering the mouth. 936 For these reasons, we code “?” in fuxianhuiids. 937

32, the presence of a hypostome in adult megacheirans is uncertain. Liu 938 et al.151 labeled a rounded, anteriormost structure in a leanchoiliid larva from China as a hypostome. 939 This is consistent with the presence of a pre-oral structure called a labrum in Oelandocaris81, proposed 940 as a megacheiran larva32

No pre-oral structure has been described in isoxyids. 943

and resolved as such in this study. In the absence of evidence for a plate-like 941 structure, we shall consider that leanchoiliid larvae possess a labrum. 942

944 [57] Hypostome type 945

0. Conterminant 946 1. Natant 947 2. Fused with doublure 948

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949 Remark: An overview of this character was provided by Cotton and Braddy152

951 . 950

[58] Labrum (as a distinct, partly soft structure) 952 0. Absent 953 1. Present 954

955 [59] Hypostome-labrum covering mouth 956

0. Absent 957 1. Present 958

959 [60] Labium 960

0. Absent 961 1. Present 962

963 Remark: The labium is the differentiation of the maxilla (=second maxilla) involving sternitic 964 elements, and is homologous across mandibulates. 965

966 [61] Post-hypostomal sternites externally developed within segments 2–4 967

0. Absent 968 1. Present 969 970

Remark: Sternites have not received consistent attention in the arthropod literature. Cephalic sternites 971 in particular are less documented overall, as they may be difficult to access, reduced, weakly 972 sclerotized or internalized. Following their work on the arthropods from Orsten-type localities, Müller 973 and Walossek153,154 defended the existence of a group called the Labrophora155. This group, which was 974 to include Eucrustacea and Phosphatocopina, was based notably on the presence of a post-oral plate 975 (“sternum”) made of the fused mandibular and maxillular sternites—a trait allegedly present in the 976 nauplii of crown crustaceans. To our knowledge, the universality of this apomorphy has not been 977 clearly demonstrated; in fact, there seems to be considerable variation in larvae and adults alike (e.g. 978 these sternites are distinct in the early stages of Nebalia156). In Euphausiacea157, the mandibular sternite 979 is limited to its invaginated bridge-like apodeme, and joined to the paragnathal sternite, all distinct 980 from maxillulary and maxillary sternites, which, in turn, can be either fused or unfused. In other cases, 981 such as in the Cephalocarida, clarification may be needed, as photographic evidence of fusion (Fig 3A 982 in Edgecombe et al.105) conflicts with reconstructions of separate sclerites (Fig. 3 in Bitsch and 983 Bitsch158

988

). In the present study, cephalic sternites were considered to be developed in the presence of 984 paragnaths—and in many of these taxa, the reduced development of other cephalic sclerites is often 985 assumed to be a reversal—but we never assumed the fusion of mandibular and maxillulary sternites in 986 crustaceans. 987

[62] Fusion of post-hypostomal sternites externally developed within segments 2–4 989 0. Absent 990 1. Present 991

992 [63] Metasternite 993

0. Absent 994 1. Present 995 996

Remark: The metasternite is a large sternum typically found in the prosoma of chelicerates, which then 997 differs from the post-cephalic sternum of, e.g., decapod crustaceans. 998

999 [64] Coxosternite 1000

0. Absent 1001 1. Present 1002

1003

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Remark: The coxosternite, typically in myriapods, is the gnathobasic plate of the maxilliped resulting 1004 from the fusion of a limb basis and its corresponding half-sternite. 1005 1006

[65] Both larval and imaginal head has tendention to form a hypostomal bridge 1007 0. Absent 1008 1. Present 1009

1010 Remark: Panzygothoracan apomorphy, sensu Kluge159

1012 (2004). Inapplicable outside hexopods. 1011

1013 FRONTALMOST APPENDAGES 1014 1015 [66] Arthrodization of first axial appendage 1016

0. Absent 1017 1. Present 1018

1019 [67] Ocular lobes 1020

0. Absent 1021 1. Present 1022

1023 Remark: A number of fossil and extant arthropods have vestigial anteriormost appendages, often 1024 inserted between the eyes and likely belonging to the ocular somite. The identity of frontal inter-ocular 1025 lobes in taxa such as Canadaspis is considered protocerebral here, but a more detailed study is needed. 1026

1027 [68] Bipartite labrum 1028

0. Absent 1029 1. Present 1030

1031 Remark: This condition applies to all arthropods with paired pre-oral lips or lobes, including 1032 protocaridids, Agnostus (tentatively) and Archegozetes. 1033

1034 [69] Branching frontalmost appendage 1035

0. Absent 1036 1. Present 1037

1038 Remark: We refrain here from using the term “multiramous” to avoid the confusion with biramous 1039 appendages. Based notably on musculature, Boxshall160

1042

discussed how known antennules were 1040 composed of a single true axis. We construe that this condition is similar in “great appendages.” 1041

[70] Rami of branching frontalmost appendage originating from different podomeres 1043 0. Absent 1044 1. Present 1045

1046 Remark: This character differentiates the typically bipartite antennule of malacostracans from types 1047 involving a more complex branching pattern (typically megacheiran). Stomatopods are coded 0 since 1048 flagellae originate from the same podomere. 1049

1050 [71] Frontalmost appendage with flagellate extensions 1051

0. Absent 1052 1. Present 1053

1054 [72] Frontalmost appendage chelate 1055

0. Absent 1056 1. Present 1057

1058 1059

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[73] Orientation of first axial appendage 1060 0. Ventro-frontal 1061 1. Dorsal 1062

1063 [74] Segmentation of frontalmost arthrodized appendage 1064

0. Multi-segmented 1065 1. Reduced 1066

1067 Remark: We considered the reduced state to be inferior to six segments. Artiopod antennules are 1068 considered segmented, and not annulated, following e.g. Boxshall79

1070 . 1069

[75] Arthrodized frontalmost appendage, multi-segmented type 1071 0. Robust, thick branch 1072 1. Long antennular 1073

1074 [76] Inner spinose outgrowths on arthrodized frontalmost appendage 1075

0. Absent 1076 1. Present 1077

1078 Remark: For a more detailed review of the “inner” and “outer” spine characters, see Aria and Caron43

1081

. 1079 In this analysis, inner and outer spines in the dinocaridid sense are coded as absent in euarthropods. 1080

[77] Type of inner spinose outgrowths on frontalmost appendage 1082 0. Sub-equal length or tapering gradually along entire margin 1083 1. Elongate mid-margin 1084 1085

[78] Secondary spines on inner spinose outgrowths of frontalmost appendage 1086 0. Absent 1087 1. Present 1088

1089 [79] Outer spinose outgrowths on arthrodized frontalmost appendage 1090

0. Absent 1091 1. Present 1092

1093 [80] Outer spinose outgrowth on arthrodized frontalmost appendage with elongate terminal spine 1094

0. Absent 1095 1. Present 1096

1097 Remark: A differentiation by elongation of the distal outer spines is characteristic of the Anomalocaris 1098 group and isoxyids43

1100 . 1099

1101 OTHER CEPHALIC LIMBS 1102 1103 [81] All cephalic endopods posterior to second pair well-developed 1104

0. Absent 1105 1. Present 1106

1107 Remark: This character primarily differentiates artiopods and chelicerates from mandibulates, in which 1108 some or all cephalic endopods are partially or totally reduced, at least in adults. The well-developed 1109 endopods are considered to be based on a heptopodomeran morphology; palps are considered 1110 sufficiently modified to depart from this definition. 1111

1112 [82] Endopod of second appendage pair 1113

0. Developed 1114 1. Reduced 1115

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1116 [83] Endopod of third appendage pair 1117

0. Developed 1118 1. Reduced 1119

1120 [84] Endopod of fourth appendage pair 1121

0. Developed 1122 1. Reduced 1123

1124 [85] Endopod of fifth appendage pair 1125

0. Developed 1126 1. Reduced 1127

1128 [86] Some cephalic endopods are walking limbs 1129

2. Absent 1130 3. Present 1131

1132 [87] Repeated appendage morphology in tagma I 1133

0. Absent 1134 1. Present 1135

1136 Remark: This character codes for the presence of “duplicate” appendages within the somatic head, that 1137 is, successive appendage pairs that display identical or nearly identical morphologies. Thus, in taxa 1138 coded for 0, any successive pairs are differentiated from each other, which likely is the derived 1139 condition and is characteristic of most mandibulates and certain eurypterids, such as megalograptidae 1140 (see Lamsdell et al.161

1142 ). 1141

[88] Dichotomy in appendage morphology between tagma I and tagma II 1143 0. Absent 1144 1. Present 1145

1146 Remark: Most extant taxa but also some fossils show an abrupt change in limb morphology between 1147 the anterior series of appendages, or the last pair of this series, and the following ones. 1148

1149 [89] Proximo-distal differentiation of endopod podomeres in head (tagma I) 1150

0. Absent 1151 1. Present 1152

1153 Remark: This character refers to the relative elongation of certain podomeres, as opposed to uniform 1154 podomeres in the endopod. 1155 1156

[90] Podomere number in head (tagma I) 1157 0. 7 1158 1. <7 1159 2. >7 1160

1161 Remark: The condition of seven endopodial podomeres (six segments and a terminal claw) is an 1162 especially well-constrained state across stem and extant arthropod groups. Notwithstanding variations, 1163 including the loss or subdivision of existing podomeres, this character has been found to have a strong 1164 influence on phylogenetic reconstructions, and has, for that reason, been associated with an entire 1165 euarthropod clade, the Heptopodomera Aria et al.32

1168

. Whenever there is variation between head limbs, 1166 we code “1” if at least one endopod shows seven podomeres. 1167

[91] Post-antennular appendage expressed 1169 0. Absent 1170 1. Present 1171

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1172 Remark: Post-antennular is here used a generic term for post-frontalmost, whether the frontalmost 1173 appendage is an antennule, a chelicera or a “great appendage”. We refrain from using the brain-based 1174 “deutocerebral” and “tritocerebral” terms, because most of the matrix is still coded based on external 1175 topological observations. The absence of expression implies here the presence of an intercalary 1176 segment in larvae, as in hexapods and myriapods. 1177 1178

1179 [92] Post-antennular appendage differentiated 1180

0. Absent 1181 1. Present 1182 1183

Remark: The pair of appendages following the frontalmost appendages in euarthropods—presumably, 1184 the tritocerebral appendage—can be either identical to the morphology of posterior head limbs or have 1185 a morphology of its own. 1186

1187 [93] Chelate or sub-chelate termination of post-antennular appendage 1188

0. Absent 1189 1. Present 1190 1191

Remark: The alignment of the arthropod head and, in particular, of the homology of the chelicerae with 1192 the antennules of mandibulates, has been the subject of a long lasting debate148. Although there is now 1193 a growing consensus that the chelicera is deutocerebral and has the same origin as antennules162

1198

, we 1194 remain here agnostic; this character in particular codes only for chelate pedipalps and therefore does 1195 not affect taxa other than chelicerates. For the same reason, we code “?” in Offacolus and Dibasterium 1196 for characters 95 and 96 below. 1197

[94] Post-antennular appendage reduced, terminating in a strong claw 1199 0. Absent 1200 1. Present 1201

1202 Remark: The post-antennular appendage of fuxianhuiids, sometimes called the specialized post-1203 antennal appendage (SPA)37

1206

, is segmentally reduced and curved under the head, apparently ending in a 1204 single claw. 1205

[95] Ramification of post-antennular appendage 1207 0. Uniramous 1208 1. Biramous 1209

1210 [96] Developed endites on endopod of post-antennular appendage 1211

0. Absent 1212 1. Present 1213

1214 [97] Endopod of post-antennular appendage annulate or flagellate 1215

0. Absent 1216 1. Present 1217

1218 [98] Podomere number of endopod of post-antennular appendage 1219

0. <7 1220 1. 7 1221

1222 [99] Coxa on post-antennular appendage 1223

0. Absent 1224 1. Present 1225

1226

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Remark: Many euarthropod taxa have a well-developed proximalmost segment on the post-antennular 1227 appendage in addition to the basis. We call this a coxa, as per its use in crustaceans. In Martinssonia163, 1228 this coxa is present on this appendage in a vestigial form, as a “proximal endite” (see Walossek77

1230 ). 1229

[100] Exopod of post-antennular appendage, type 1231 0. Stenopodous 1232 1. Annulate 1233 2. Rodiform 1234 3. Paddle 1235 4. Tripartite 1236

1237 Remark: The post-antennular exopods of the early leanchoiliid larva described by Liu et al.151

1240

appear 1238 very similar to those of Oelandocaris, and are considered stenopodous here. 1239

[101] Exopods on cephalic appendages excluding two anteriormost pairs 1241 0. Absent 1242 1. Present 1243

1244 [102] Exopod of cephalic appendages excluding two anteriormost pairs, type 1245

0. Stenopodous 1246 1. Annulate 1247 2. Rodiform 1248 3. Paddle 1249 4. Tripartite 1250

1251 [103] Multisetose, rounded tip on cephalic exopods 1252

0. Absent 1253 1. Present 1254

1255 Remark: This type of limb termination is encountered in a variety of euarthropods, including copepods, 1256 Orsten crustaceomorphs Offacolus and Dibasterium. The setose appendage identified in the head of 1257 Sanctacaris is different from what has been described as the exopods138

1260

. We are currently revising the 1258 description of Sanctacaris and its relatives. 1259

1261 [104] Enditic outgrowths on cephalic endopods excluding two anteriormost pairs 1262

0. Absent 1263 1. Present 1264

1265 [105] Endopod of third cephalic appendage chelate or subchelate 1266

0. Absent 1267 1. Present 1268

1269 [106] Third cephalic appendage with a well-developed gnathobase 1270

0. Absent 1271 1. Present 1272

1273 Remark: A gnathobase is a strongly developed basal (i.e, corresponding to the basis) podomere with 1274 dentate proximal margin. 1275

1276 [107] Third cephalic appendage a mandible 1277

0. Absent 1278 1. Present 1279

1280 Remark: Although the gnathobasic mandible of mandibulates has sometimes been homologized with 1281 the gnathobases of euchelicerates (e.g. Popadic et al.137), other views based on the evolution of the 1282

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“proximal endite”77,164

1287

, as well as this study argue that a pre-basal, coxal segment at least contributed 1283 to the formation of the mandible. We therefore separate the mandible from the coding of gnathobases 1284 of the third cephalic appendage in other taxa, namely in non-multi-segmented megacheirans and 1285 arachnomorphs. 1286

[108] Telognathic mandible 1288 0. Absent 1289 1. Present 1290

1291 Remark: From RS2011, char. 170. 1292

1293 [109] Mandibular gnathal edge 1294

0. Consisting of molar and incisor process 1295 1. Only ellipsoid pars molaris present 1296 2. Row of parallel teeth 1297 3. Shovel with terminal teeth 1298 4. Group of paired teeth and hair pad 1299

1300 Remark: From RS2011, char. 172; see also Richter48

1302 . 1301

1303 [110] Mandibular lamellate combs 1304

0. Absent 1305 1. Present 1306

1307 Remark: Lamellate combs on the distal process of mandibles are diagnostic of diplopod and chilopod 1308 myriapods133

1310 . 1309

[111] Hypopharynx 1311 0. Absent 1312 1. Present 1313 1314

Remark: The hypopharynx of myriapods and insects is a complex sternal structure partly composed of 1315 the paragnaths165

1317 and possibly of the sternites of the maxillula. 1316

[112] Fourth cephalic appendage 1318 0. Reduced exopod 1319 1. Exopod and endopod vestigial 1320

1321 Remark: Those conditions are mutually exclusive among known arthropods. Other possible states for 1322 this character are coded in separate characters, and therefore relevant taxa are inapplicable here. 1323

1324 [113] Palp on fourth cephalic appendage 1325

0. Absent 1326 1. Present 1327

1328 Remark: This character codes for the presence of an endopod modified into a palp, i.e. a slender, smaller 1329 appendage that has become secondary to a relatively large and often enditic coxa-basis complex. 1330

1331 [114] Palp on fourth cephalic appendage, type 1332

0. Reduced 1333 1. Well developed 1334

1335 Remark: This character codes for the well-developed maxillular palps of insects, but was also coded for 1336 the phyllopod-like arthropod Cinerocaris. 1337

1338

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[115] Post-mandibular plate formed by the fusion of the maxilla and the intermaxillary sternum 1339 0. Absent 1340 1. Present 1341 1342

Remark: Following char. 51 in Edgecombe107, the gnathochilarium of chilognath diplopods is 1343 homologized with the condition seen in pauropods, where the maxillule is fused with the intermaxillary 1344 sternum, based on the view that the gnathochilarium also, and exclusively, derives from the maxillular 1345 limbs and sternites78,166

1347 . 1346

[116] Cephalic appendages 4 and 5 ending with chelate termination 1348 0. Absent 1349 1. Present 1350

1351 [117] Fifth cephalic appendage 1352

0. Integrated to gnathal plate (labium) 1353 1. Reduced, enditic 1354

1355 Remark: As noted above for the fourth appendage (char. 112), only taxa showing relative 1356 differentiation are coded for this character. 1357

1358 [118] Fifth cephalic appendage vestigial 1359

0. Absent 1360 1. Present 1361

1362 Remark: In certain branchiopod crustaceans, the maxilla is reduced to only a vestigial apparatus; in 1363 diplopod and pauropod myriapods, the branches of the maxillar appendage are fully reduced. 1364

1365 [119] Fifth cephalic appendage with developed palp 1366

0. Absent 1367 1. Present 1368

1369 [120] Internalization of mouthparts 1370

0. Absent 1371 1. Present 1372

1373 Remark: Entognathy is a diagnostic trait of the Collembola, Diplura and Protura, but some authors 1374 (Manton167

1379

) consider the mouthparts of pauropod and chilopod myriapods to be internalized as well. 1375 We restrict the character to the entire withdrawal of mouthparts within the cephalic compartment 1376 formed anteriorly by the clypeo-labrum and posteriorly by the labium. We also excluded the 1377 internalized jaws of onychophorans from the coding. 1378

[121] Oral cone 1380 0. Absent 1381 1. Present 1382

1383 Remark: This character codes for the formation of circumoral complex of reduced appendages neatly 1384 distinct from more posterior limbs and independent from the structure of the head tagma. 1385

1386 [122] Atrium oris 1387

0. Absent 1388 1. Present 1389

1390 Remark: The atrium oris exclusively refers here to the recession of the stomodaeum so as to form an 1391 oral cavity, usually accommodating appendages differentiated as mouthparts. 1392

1393 1394

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MOUTH AND STOMODAEAL AREA 1395 1396 [123] Mouth opening anteriorly (as opposed to ventrally or dorso-ventrally) 1397

0. Absent 1398 1. Present 1399

1400 [124] Type of circumoral structures 1401

0. Toothed lips 1402 1. Lamellae 1403 2. Plates 1404 3. Hypostome-labrum complex 1405

1406 Remark: This character has been the focus of a recent analysis in early panarthropods127. Although it is 1407 not clear whether the small oblong juxtaposed sclerotic elements in Hallucigenia sparsa form a full 1408 circumoral ring, we follow the authors and homologize them with those of dinocaridids. Although 1409 “peytoia-like mouthparts” have been described from Megadictyon168, we doubt their authenticity based 1410 on published evidence169. The circumoral lips of onychophorans are morphologically akin to those of 1411 tardigrades, in which they can be more or less plate-like170. We consider that the condition is 1412 homologous in Aysheaia. Although the onychophoran circumoral papillae are likely autapomorphic, as 1413 secondarily formed around the deutocerebral appendage171 and involving innervation from all brain 1414 ganglia172, at least some of these papillae are still connected to the protocerebrum, as is the case in 1415 tardigrades173, and likely represent the ancestral condition. We thus depart from the approach taken by 1416 Yang et al.129

1418 in regarding circumoral papillae in both taxa as analogous only. 1417

[125] Circumoral structures sclerotized 1419 0. Absent 1420 1. Present 1421

1422 [126] Proboscis 1423

0. Absent 1424 1. Present 1425

1426 PROTOCEREBRAL TERGITE 1427 1428 [127] Tergite of the ocular (protocerebral) somite 1429

0. Absent 1430 1. Present 1431

1432 Remark: An inter-ocular tergite has been found in dinocaridids and fossil euarthropods38,174, and is 1433 widespread in extant euarthropods. In stem arthropods, this structure has most often been referred to as 1434 the “anterior sclerite”36. As the sclerite dorso-anterior to the labrum, the inter-ocular tergite could be 1435 integrated with the clypeus-frons of terrestrial mandibulates, and would then to a greater or lesser 1436 extent be fused to the pre-oral sternite (hypostome) and labrum. In chelicerates, this sclerite is 1437 sometimes distinct from the labral tissue proper (see hypostome character 56, but otherwise may form 1438 a coherent structure with the labrum sensu strictu as part of the “labrum-epistome”175

1440 . 1439

[128] Tergite of the ocular (protocerebral) somite, type 1441 0. Rounded 1442 1. Rostral 1443

1444 1445 ALIMENTARY TRACT AND OTHER INTERNAL CHARACTERS 1446 1447 [129] Stomach 1448

0. Absent 1449 1. Present 1450

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1451 Remark: The euarthropod main digestive tract is typically subdivided into three sections: foregut (or 1452 sometimes stomodaeum), midgut (or intestine or mesenteron) and hindgut (or proctodaeum). The 1453 foregut comprises the oesophagus and pharynx, which we consider plesiomorphic. The midgut can be 1454 subdivided primarily into a stomach, i.e. an anterior inflation of the tract often delimited by diagnostic 1455 constrictions (e.g. proventriculus), and further into a second stomach and one or two intestines. The 1456 hindgut can be differentiated into a rectum, which in insects is often inflated with respect to the 1457 intestine, but most of the time constitutes a neat diametrical reduction of the duct. In insects also, the 1458 post-esophagal system is deported posteriorly towards the “abdomen,” a plasticity resulting from the 1459 decoupling between mesodermal somatization and the development of the endoderm (although there 1460 are developmental exceptions to this; see e.g. Brusca and Wilson176

1466

). Given the post-stomodaeal 1461 attachment of the ramified caeca in many stem arthropods, we construe that these glands were 1462 originally cephalic and we therefore use this terminology. Insects have evolved very sophisticated 1463 alimentary tracts, and not all of their peculiarities are covered here. This character and the following 1464 ones refer exclusively to visible morphological differentiations of the digestive tract. 1465

[130] Stomach in a frontal position 1467 0. Absent 1468 1. Present 1469

1470 Remark: In certain arthropods, the stomach occupies a very anterior position under the cephalic shield, 1471 so that the esophagus is either very short or directed posteriorward towards the posteriorly directed 1472 mouth. 1473

1474 [131] Stomach—additional pouch 1475

0. Absent 1476 1. Present 1477

1478 Remark: In decapod crustaceans and other eumalacostracans, as well as in (all?) insects, there are two 1479 post-esophageal pouches. In decapods, they are called cardiac and pyloric stomachs; in insects, they 1480 are called crop and stomach. 1481

1482 [132] Secondary organs connected to the central digestive duct 1483

0. Absent 1484 1. Present 1485

1486 Remark: This is a sovereign character for all variations below describing secondary digestive 1487 structures, and refers to blind caeca or tubules adjoining the gut. All types of glands present in 1488 euarthropods are excluded, as they either originate from and open at the tips of the limbs or within the 1489 cephalic space and open next to the mouth opening, that is, they are not connected to the gut. Notable 1490 exceptions are the pharyngeal and post-pharyngeal glands in social hymenopterans; the presence of 1491 these foregut-related organs is coded accordingly, even if it is convergent, although they may have 1492 homologous developmental origins. It is also not rare that larvae possess caeca that may not be retained 1493 in adults, such as in the case of Drosophila177

1498

—we have not considered ontogenetic variations in this 1494 dataset and have coded the imaginal state only (when known). Malpighian tubules are not included in 1495 this dataset, as they are likely plesiomorphic in Euarthropoda and otherwise extremely difficult to 1496 assess in fossils. 1497

[133] Secondary digestive organs serially repeated along the post-cephalic portion of the gut 1499 0. Absent 1500 1. Present 1501

1502 Remark: This is a sovereign character character for the next three characters (134–136). In some 1503 instances, particularly in early arthropods169, single-branch diverticulae are also repeated in head 1504 segments. As there is no case of serially repeated glands in the post-cephalic area co-existing with a 1505

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cephalon devoid of digestive glands, we make this state implicit here but explicitly dichotomous in 1506 character 138 1507

1508 [134] Shape of post-cephalic secondary digestive structures 1509

0. Reniform 1510 1. Bulgy triangles 1511 2. Caeca 1512

1513 [135] Striations on post-cephalic secondary digestive structures 1514

0. Absent 1515 1. Present 1516

1517 [136] Branching of post-cephalic secondary digestive structures 1518

0. Absent 1519 1. Present 1520

1521 [137] Differentiation of cephalic secondary digestive structures 1522

0. Absent 1523 1. Present 1524

1525 1526 [138] Ramification of cephalic secondary digestive structures 1527

0. Absent 1528 1. Present 1529

1530 Remark: This character codes for the sharing of a single base for all caeca/diverticulae, not branch 1531 ramification (termed branching here; see character 139. 1532

1533 [139] Branching of cephalic secondary digestive structures 1534

0. Absent 1535 1. Present 1536

1537 [140] Peritrophic membrane 1538

0. Absent 1539 1. Present 1540

1541 Remark: From RS2011, char. 238. Shared by mandibulates and onychophorans. 1542

1543 [141] Metameric ganglia on nerve cord 1544

0. Absent 1545 1. Present 1546

1547 Remark: Strong homology has been established between the nerve cord of tardigrades and that of 1548 euarthropods141,173, and potentially constitutes a synapomorphy of Tactopoda129,178

1550 . 1549

[142] Metanephridia with sacculus containing podocytes 1551 0. Absent 1552 1. Present 1553

1554 Remark: From RS2011, char. 29. Shared by onychophorans and euarthropods. 1555 1556

[143] Segmental invaginations of neuroectoderm giving rise to ventral organs 1557 0. Absent 1558 1. Present 1559

1560 Remark: From RS2011, char. 48. Shared by chelicerates and myriapods. 1561

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TRUNK 1562 1563 [144] Thorax 1564

0. Absent 1565 1. Present 1566

1567 Remark: A thorax is a post-cephalic tagma mainly recognizable because of limb differentiation, but 1568 also sometimes because of tergo-sternal differentiation, with respect to both cephalon and posterior 1569 tagma, the latter possibly being an abdomen. Part or all of the thorax can be structurally incorporated 1570 into the head tagma as a cephalothorax, as coded by character 44. Although most likely homoplastic, 1571 we expect this character to be optimized locally and to provide information on the possible affinities of 1572 thoracic tagma in stem arthropods. 1573

1574 [145] Number of thoracic somites 1575

0. 11 1576 1. 5 1577 2. 8 1578 3. 3 1579

1580 Remark: This character is applicable only to taxa sharing a number of thoracic segments with at least 1581 one other taxon in the matrix. It is currently restricted to crustaceans and hexapods. 1582

1583 [146] Abdomen 1584

0. Absent 1585 1. Present 1586 1587

Remark: We here define the abdomen as a differentiated posterior tagma partially or totally limbless. 1588 The presence of a thoracic region does not itself determine the presence of an abdomen if the posterior 1589 tagma is limbed. Likewise, we coded this trait as absent in taxa with one or two posteriormost limbless 1590 segments if they were not structurally differentiated from anterior ones. 1591

1592 [147] Number of core trunk segments 1593

0. >14 1594 1. 12–14 1595 2. 9 1596 3. 7–8 1597 4. <7 1598

1599 Remark: The pattern of 12 core trunk segments, with variations of generally one segment, is 1600 remarkably well constrained across many stem arthropods and chelicerates. We tentatively added non-1601 leptostracan malacostracans to that group, as their fourteen-segmented trunk may originate from a 1602 similar ground pattern. This character is inapplicable to taxa coded as “polysegmented” (char. 149). 1603

1604 [148] Seventh appendage integrated into the cephalon and highly differentiated 1605

0. Absent 1606 1. Present 1607

1608 Remark: This character codes for the xiphosuran chilarium and its equivalents. 1609

1610 [149] Multisegmentation 1611

0. Absent 1612 1. Present 1613 1614

Remark: This character refers to the presence of a large number of segments (>20). 1615 1616 1617

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[150] Tergo-sternal decoupling 1618 0. Absent 1619 1. Present 1620

1621 Remark: In the Notostraca and Progoneata (non-chilopod myriapods), the number of tergites is known 1622 to differ from the number of sternites and appendages. In all but symphylans, this condition is called 1623 diplo- or polysegmentation, meaning that there are more sternites and appendages than tergites. In 1624 symphylans, there are supernumerary tergites. In Chengjiangocaris36

1629

, there is possible polypody 1625 without increase in sternite number, as accounted for in character 131. We here restrict the coding to 1626 instances of such decoupling. For clarity, we use “multisegmentation” to describe segment number 1627 only (see char. 149). 1628

[151] Tergo-sternal decoupling, type 1630 0. Polypody 1631 1. Polypody and “polysternity” 1632 2. “Polytergity” (autapomorphy of symphylan myriapods) 1633

1634 [152] Pleurae 1635

0. Reduced or fused 1636 1. Developed 1637

1638 Remark: Pleurae (sometimes “pleurites”) are lateral sclerites on the body of arthropods that can be part 1639 of the tergites or independent, as in insects and some crustaceans, e.g., in which pleurae are developed 1640 internally in the cephalothorax179

1643

. Since the independence of pleurae is useful in differentiating insect 1641 orders, this character codes exclusively for pleurae that are extensions of the tergites. 1642

[153] Tergo-pleural rings 1644 0. Absent 1645 1. Present 1646

1647 Remark: Tergites and pleurae can be fused and form ring-shaped trunk segments closing on small 1648 sternites characteristic of a number of crustaceomorphs and hexapods. 1649

1650 [154] Pleural orientation 1651

0. Horizontal 1652 1. Around body 1653

1654 Remark: Sub-horizontal pleurae are usually characteristic of flattened, crawling taxa such as 1655 trilobitomorphs. 1656

1657 [155] Pleural length 1658

0. Short, i.e. equal or inferior to body diameter 1659 1. Long, i.e. exceeding body diameter 1660

1661 [156] Articulating ridge 1662

0. Absent 1663 1. Present 1664

1665 [157] Articulating ridge, type 1666

0. Single 1667 1. Antero-posterior 1668

1669 Remark: Pleurae can bear two dorsal carinae, creating a superstructure resembling two pleurae 1670 superimposed. 1671

1672 1673

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[158] Transverse stipital muscle 1674 0. Absent 1675 1. Present 1676

1677 Remark: The loss of the transverse stipital muscle has been regarded as a potential apomorphy of 1678 Neoptera excluding Plecoptera180

1680 . Inapplicable outside hexopods. 1679

1681 TRUNK APPENDAGES AND GENERAL APPENDICULAR CHARACTERS 1682 1683 [159] Proximo-distal differentiation of endopod podomeres in tagma II 1684

0. Absent 1685 1. Present 1686

1687 [160] Podomere number in tagma II 1688

0. 7 1689 1. <7 1690 2. >7 1691

1692 [161] Maxillipeds 1693

0. Absent 1694 1. Present 1695

1696 Remark: Maxillipeds are defined as thoracic appendages recruited by the gnathal, masticatory portion 1697 of the cephalon, and usually modified into stout clawed or sub-chelate legs. 1698

1699 [162] Tergites of maxilliped segments fused to head shield 1700

0. Absent 1701 1. Present 1702

1703 [163] Single main maxilliped 1704

0. Absent 1705 1. Present 1706

1707 Remark: Certain mandibulate taxa (e.g. chilopods, isopods) have a single dominant pair of maxillipeds 1708 associated with, but not necessarily fused to, the head shield. 1709

1710 [164] Slit sensilla 1711

0. Absent 1712 1. Present 1713

1714 Remark: From RS2011, char. 46. 1715

1716 [165] Basis (basipod) 1717

0. Absent 1718 1. Present 1719

1720 Remark: A basis/basipod, also called protopodite, is generally recognized as the enlarged basal 1721 podomere to which attach endopod and exopod. In uniramous limbs of mandibulates, reductions, 1722 fusions and subdivisions of podomeres may render the identification of the original coxal and basal 1723 segments difficult, however, we consider that all those limbs share a basis plesiomorphically. 1724

1725 [166] Basipod formed of at least two elements 1726

0. Absent 1727 1. Present 1728

1729

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Remark: This is a general character for all taxa with limb bases composed of more than one structure, 1730 excluding epipods and exites. This includes pleurites and separate proximal endites. Consequently, this 1731 character is equivalent to coding presence or absence of a “coxa” defined as a separate element—but 1732 not necessarily a podomere—proximal to the basis (see characters 167 and 168 for further discussion 1733 of homology and choice of coding). 1734

1735 [167] Basipod multi-segmented 1736

0. Absent 1737 1. Present 1738

1739 Remark: Somewhat overlooked in recent analyses, though pointed out by Walossek56

1744

, Canadaspis, but 1740 also Odaraia (Extended Data Fig. 9), have a seven-segmented distal portion of the limb and a proximal 1741 portion with endites, which we consider a segmented basis. This character codes only for basipods with 1742 a proximo-distal subdivision made up of more than three segments. 1743

[168] Multiple endites on basipod 1745 0. Absent 1746 1. Present 1747

1748 [169] Proximal endite 1749

0. Absent 1750 1. Present 1751

1752 Remark: Müller and Walossek61,76,181 and Walossek77 have documented the existence, in some 1753 crustaceomorphs and crustaceans, of a proximal endite that they construe to be homologous with the 1754 pre-basal structure called the coxa, and that would constitute a synapomorphy of Crustacea. We 1755 believe, like Boxshall79, that this is more generally the detached proximalmost endite of the basis, 1756 which may not homologize with the pre-basal coxa when further proximal differentiations exist. The 1757 proximal endite is also unlikely to be diagnostic of mandibulates, because a proximal, movable endite 1758 has been described in xiphosurans167,182 (the “epicoxite” or precoxa of Størmer183) as well as in 1759 eurypterids (see e.g. Lamsdell et al.161), and even in Sidneyia55,59,79

1761 . 1760

1762 [170] Coxa as entire pre-basal podomere 1763

0. Absent 1764 1. Present 1765

1766 Remark: We use here the term coxa in the restricted sense of a fully formed segment proximal to the 1767 basis, as used among crustaceans. The nomenclatural history has otherwise differed between major 1768 mandibulate phyla, and there are still some uncertainties regarding homology among basal limb 1769 portions. In hexapods and myriapods, limb bases are surrounded by two sets of sclerites, namely, the 1770 outer eupleurites and inner trochantinopleurites184, a condition that appears similar to the complex of 1771 sclerotic elements surrounding the base of malacostracan pleopods185. In hexapods, however, it has 1772 been shown that those coxal sclerites originate developmentally from one precoxal (“subcoxa”) 1773 podomere80, which was used as an argument to support homology between the crustacean coxa basis 1774 and the hexapod subcoxa and coxa. This conflicts with the hypothesis79 that the documented “precoxa” 1775 of crustaceans186,187 is homologous to the equivalent precoxa of myriapods and insects, that is, the outer 1776 ring of pleurites (eupleurites). It is conceivable that the larval subcoxa identified in Tribolium 1777 represents two fused segments, but it is equally probably that the “coxa” itself is a structure the 1778 becomes subdivided when partially integrated into the body wall, as seems to be the case in 1779 Speleonectes188 and as the complex scleritic patterns in malacostracan pleopods suggests185. Further 1780 complications arise from Arthropleura, which displays a seemingly homologous condition of coxal 1781 pleurites—albeit likely autapomorphic in their arrangement—with a number of leg podomeres 1782 exceeding those of extant myriapods, thus suggesting that the transformation of a proximalmost 1783 segment into a set of supporting sclerites may be convergent within the same phylum. In this study, we 1784 nonetheless emphasized the homologous presence and arrangement of pleurites across mandibulates, 1785

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while otherwise restricting “coxa” and “precoxa” characters to taxa in which they were clearly 1786 expressed as podomeres in the adults. See further discussion on the importance of this character for 1787 arthropod evolution in main text. The “coxa” of chelicerates is considered synonymous to limb 1788 basis/basipod (see character 165). 1789

1790 [171] Precoxa as whole pre-coxal podomere 1791

0. Absent 1792 1. Present 1793

1794 [172] Pleurites formed by several sclerotic elements surrounding limb insertion 1795

0. Absent 1796 1. Present 1797

1798 [173] Arrangement of pleurites 1799

0. Outer/proximal and distal/inner sets 1800 1. Multiple sclerotic pieces 1801

1802 [174] Gnathobases 1803

0. Absent 1804 1. Present 1805

1806 Remark: Gnathobases are considered to be strong differentiations of the basipod involving lateral 1807 expansion and development of marginal teeth. This character applies to all tagma. 1808

1809 [175] One or more gnathobase(s) reduced in tagma I 1810

0. Absent 1811 1. Present 1812

1813 Remark: This mostly differentiates the plesiomorphic arachnomorph condition from the loss of most 1814 gnathobases in the arachnid prosoma. 1815

1816 [176] Secondary appendicular outgrowths on trunk 1817

0. Absent 1818 1. Present 1819

1820 Remark: It has been hypothesized115 that the biramous limb in euarthropods originated from the fusion 1821 of two branches along the trunk axis, a view supported by recent paleontological findings43,189. In 1822 contrast, a developmental study190 shows that, in certain crustaceans, the exopods could form as a 1823 division of the endopodial axis rather than as a distinct cell lineage from the basis, as would be 1824 expected from a plesiomorphic fusion of the rami. Accordingly, secondary branches in stem- and 1825 crown-group arthropods could be analogous. The morphology of trunk appendages in Surusicaris43 as 1826 currently interpreted, with a long basis bearing two very similar rami, suggests that the ground pattern 1827 of the secondary appendicular branch was not exitic (rather than exopodial), at least not exclusively. 1828 Moreover, the example of Wolff and Scholtz190 applies to a particular type of biramous limb where 1829 endopods and exopods are not morphologically differentiated—very much as is the case in Surusicaris. 1830 We therefore favour the hypothesis that developmental differences in the formation of exopods in 1831 extant taxa are secondary to a common origin of the biramous limb, an approach that could be 1832 supported by observations of variability in limb formation (although in that case the enditic origin of 1833 the stenopodous limb remains to be tested phylogenetically, see Olesen et al.191

1836

). We agree, however, 1834 on the distinct nature of proximal lamellae in xiphosurans, which we discuss in char. 178. 1835

[177] Secondary appendicular outgrowths on trunk, type 1837 0. Lobopodous 1838 1. Sclerotized 1839

1840 1841

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[178] Proximal lamellae 1842 0. Absent 1843 1. Present 1844

1845 Remark: Suzuki and Bergström192 have built a case for the differentiation of the “protopod” lamellae in 1846 xiphosurans and the exopod ornamentation of trilobites and other lamellipedians. Redescriptions of 1847 xenopod limb morphology have shown that proximal and distal ornamentations, including proximal 1848 lamellae, could co-exist on a single, multi-partite exopod59,95. The existence of proximal lamellae is 1849 also a possible feature of megacheirans, as we illustrated in Alalcomenaeus43 (fig. 9E of that work). We 1850 therefore support the distinction between distal and proximal lamellae. Likewise, the dinocaridid 1851 lanceolate blades, attached to the lobes’ surface94,117

1855

, are more likely to correspond to proximal 1852 lamellae than to exopodial adornment. A detailed study of the morphology and origin of such proximal 1853 lamellae is currently in progress. 1854

[179] Proximal lamellae internalized 1856 0. Absent 1857 1. Present 1858

1859 Remark: This character groups scorpions and tetrapulmonates. 1860

1861 [180] Trunk endopod reduced posterior to somatic head 1862

0. Absent 1863 1. Present 1864

1865 [181] Limb arthrodization in trunk 1866

0. Absent 1867 1. Present 1868

1869 [182] Main sclerotized trunk exopod type 1870

0. Paddle/lobe 1871 1. Multipartite 1872 2. Rodiform 1873 3. Annulate 1874 4. Reduced 1875 5. Three-segmented 1876 6. Phyllopodous 1877

1878 Remark: The “multi-partite” and “three-segmented” conditions differ in that the first designates the 1879 xenopod condition with a triangular middle podomere (e.g. Sidneyia59), whereas the second refers to 1880 the three-segmented exopod branch of nectiopod and copepod crustaceans35

1886

. The “pleon-type lobe” 1881 condition refers to the simple condition of an undivided exopod branch typically found on the pleon of 1882 certain malacostracan crustaceans. We tentatively code the exopod of opisthosomal appendages in 1883 xiphosurans as multi-partite: although they lack the clear tripartite division of xenopods, they show a 1884 similar division between laterally extended plates, the proximal one bearing lamellae. 1885

[183] Endopod strongly developed in thorax 1887 0. Absent 1888 1. Present 1889

1890 Remark: Independently of the relative differentiation of podomeres, certain arthropods have distinct 1891 thoracic walking limbs. 1892

1893 [184] Phyllopodous-type limbs anywhere on body 1894 0. Absent 1895 1. Present 1896 1897

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Remark: Certain crustaceomorphs do not have phyllopodous trunk limbs, but may have similar limbs, 1898 with extensive fusion of basis, endopod and exopod, as part of the head. The condition of the maxillar 1899 appendages in Rehbachiella with the fusion of endopod and basis with well-developed endites is here 1900 considered phyllopodous. 1901

1902 [185] Terminal endopod stenopodous 1903

0. Absent 1904 1. Present 1905

1906 Remark: This character typifies body plans with articulated endopods along the entire length of their 1907 posterior tagma. 1908

1909 [186] Symmetrical pleopods 1910

0. Absent 1911 1. Present 1912

1913 Remark: Certain crustaceans have very typical biramous appendages on their posteriormost tagma 1914 whose endopods and exopods are almost identical. The formation of these appendages has been shown 1915 to differ developmentally from the typical biramous appendage190

1917 . 1916

[187] Annulation of at least one pair of exopods 1918 0. Absent 1919 1. Present 1920

1921 [188] Sub-segmentation of at least one pair of exopods 1922 0. Absent 1923 1. Present 1924 1925

Remark: For the structural difference between annulation and segmentation of arthropod appendages, 1926 see Boxshall79

1928 . 1927

[189] Attachment segment in lobate exopod 1929 0. Absent 1930 1. Present 1931

1932 Remark: The triangular proximal segment of the exopod allowing for the movement of the distal, 1933 lobate part60

1935 , is considered homologous between megacheirans and xenopods. 1934

[190] Exopod ornamentation type 1936 0. Setae 1937 1. Lamellae 1938

1939 [191] Epipod 1940

0. Absent 1941 1. Present 1942

1943 Remark: An epipod is a typically broad, ramus-like protrusion attached to the basis on the side of the 1944 exopod. 1945

1946 [192] Endite as a latero-distal projection on endopod podomeres 1947

0. Absent 1948 1. Present 1949 1950

Remark: This is a characteristic shared notably by eurypterids, Sanctacaris, Waptia and other bivalved 1951 arthropods. 1952

1953

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[193] Pusher legs with paddle tips 1954 0. Absent 1955 1. Present 1956

1957 Remark: Although the last pair of cephalic limbs is commonly called pusher legs in Limulus, we only 1958 homologize here the conditions of chasmataspidids and eurypterids. 1959

1960 [194] Developed endites on endopod podomeres in trunk (tagma II and III) 1961

0. Absent 1962 1. Present 1963

1964 [195] Paired spines on endopod podomere 1965

0. Absent 1966 1. Present 1967

1968 Remark: This character and characters 196 and 198 are coded separately as they partially co-occur and 1969 are not mutually exclusive. This approach is preferred to coding polymorphism so as to both preserve 1970 the polarization and avoid creating a sovereign character unifying all taxa with one of the described 1971 types of ornament. 1972 1973

[196] Short spines on endopod podomere 1974 0. Absent 1975 1. Present 1976

1977 [197] Multiple setae on endopod podomere 1978

0. Absent 1979 1. Present 1980

1981 [198] Paired elongate spines distally on endopod 1982

0. Absent 1983 1. Present 1984

1985 Remark: Whether or not paired spines are the main adornment of podomeres or endites on those 1986 podomeres, some taxa display distinct pairs of slender spines on their distal endopodial podomeres. 1987 Other taxa with paired spines have them expressed mostly proximally. 1988

1989 [199] Limb tip 1990

0. Pad 1991 1. Juxtaposed claws 1992 2. Trident of claws 1993 3. Chelate or sub-chelate 1994 4. Double claw 1995 5. Multiple spines 1996 6. Single claw 1997

1998 1999 POSTERIOR TERMINATION 2000 2001 [200] Sclerotization of termination 2002

0. Absent 2003 1. Present (telson) 2004

2005 [201] Telson developed 2006

0. Absent 2007 1. Present 2008

2009

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[202] Telson type 2010 0. Spine 2011 1. Plate 2012 2. Spatula 2013

2014 Remark: The terminal unit of pycnogonids is sometimes called a telson (e.g. Vilpoux and Waloszek50

2017

), 2015 but it is clearly of metameric origin, as the anus is terminal in sea spiders. 2016

[203] Anus location 2018 0. Terminal, last segment 2019 1. Base of telson 2020

2021 [204] Caudal rami 2022

0. Absent 2023 1. Present 2024

2025 Remark: For this character as well as for the furca and uropods, we follow the definition of Schram35. 2026 According to this definition, caudal rami are the appendages of the anal segment or the base of the 2027 telson, and the furca is an unsegmented pair of telsal “extensions”193

2030

. For those two features 2028 specifically, we find such descriptions robust and applicable to fossil taxa. 2029

[205] Additional caudal processes 2031 0. Absent 2032 1. Present 2033

2034 Remark: Yicaris, Rehbachiella and Lepidocaris bear an additional pair of caudal processes on the anal 2035 segment in addition to caudal rami. This seems to also be the case in Canadaspis. 2036 2037

[206] Furca 2038 0. Absent 2039 1. Present 2040

2041 [207] Uropods sensu stricto 2042

0. Absent 2043 1. Present 2044

2045 Remark: In malacostracans, uropods have been precisely defined as the appendages of the sixth pleonic 2046 segment194

2051

, which could conform to a definition of uropods as modified appendages of the pre-anal 2047 segments. It remains quite ambiguous, however, whether uropod-like structures in taxa such as Fortiforceps 2048 or Sidneyia could be homologous to one another and to malacostracan uropods. We therefore restrict the 2049 coding to malacostracans. 2050

[208] Caudal rami, type 2052 0. Spinose 2053 1. Rounded 2054 2. Filamentous 2055 3. Annulate 2056

2057 [209] Pygidium 2058

0. Absent 2059 1. Present 2060

2061 Remark: A pygidium is typically a fusion of the terminal trunk tergites. Such fusion can be more or 2062 less complete so that segment boundaries can remain visible. 2063

2064 2065

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[210] Type of pygidial fusion 2066 0. Partial 2067 1. Complete 2068

2069 Remark: This character codes for the condition of naraoiids. We also coded Limulus with state 1, as the 2070 mesosomal tergites are similarly fused. 2071

2072 [211] Axial elevation of pygidium 2073

0. Absent 2074 1. Present 2075

2076 [212] Pygidial ornamentation 2077

0. Smooth 2078 1. Spinose 2079 2080

2081 2082 2083 2084 2085 2086 2087 2088 2089 2090 2091 2092 2093 2094 2095 2096 2097 2098 2099 2100 2101 2102 2103 2104 2105 2106 2107 2108 2109 2110 2111 2112 2113 2114 2115 2116 2117 2118 2119 2120 2121

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