supplementary data for germinate tutorial: retrieving genetic data from germinate using the perl-cg...
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Supplementary Data for
GERMINATE
Tutorial:Retrieving Genetic Data
from GERMINATE using the
Perl-CG Interface
Supplementary Data for
GERMINATE
Accessing a GERMINATE database with the Perl-CGI
Interface
Access to the Perl-CGI Interface
Supplementary Data for
GERMINATE
Choice of search and browse options
Browse GERMINATE Datasets
Supplementary Data for
GERMINATE
Browsing Datasets – select database
Select a Database
Supplementary Data for
GERMINATE
List of datasets / experiments
Select a Dataset
Supplementary Data for
GERMINATE
Dataset Information
Dataset Information
Method Informat
ion
Experiment Information
including date and author
Marker Information
Link to retrieve entire dataset
Link to Microarray
Image
Supplementary Data for
GERMINATE
Dataset Information cont.
Links to Dimensio
ns describing the data(here the
list of Accessions used in
the experimen
t)Links to additional
data describing the above
dimensions or
metadatasets (here spot positions of accessions
on microarray)
Additional Informationprovided for experiment
(such as primer
sequences and PCR
annealing temperature)
Supplementary Data for
GERMINATE
Dataset Information cont.
Other information in
database linked to this
data (here map position for marker)
Supplementary Data for
GERMINATE
Retrieve Dataset
Links to Accession Informati
on
Allele Value
s
Links to Institution
Information which holds the collection the Accession is a
part of
Supplementary Data for
GERMINATE
Passport data for
this Accessio
n
Accession Information
Datasets having data for
this Accessio
n
Comments and
additional information
which describes
this Accession
Supplementary Data for
GERMINATE
Link to imagesGel or microarray images can be stored and linked to for checking
allele scores. Similarly, images can be linked to accessions to store images of plant phenotypes.