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Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007) between individual syntenic chromosome pairs. Ordered C. savignyi reftig identifiers are shown along the y-axis, with blue lines indicating boundaries between reftigs. The aspect ratio of each plot is one. As C. intestinalis chromosome 11 was absent from the assembly and the alignments, there is no plot to its syntenic counterpart, C. savignyi chromosome 10. No plot is shown for C. savignyi chromosome 14 as no syntenic chromosome 14 was found in C. intestinalis.

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Page 1: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007) between individual syntenic chromosome pairs. Ordered C. savignyi reftig identifiers are shown along the y-axis, with blue lines indicating boundaries between reftigs. The aspect ratio of each plot is one. As C. intestinalis chromosome 11 was absent from the assembly and the alignments, there is no plot to its syntenic counterpart, C. savignyi chromosome 10. No plot is shown for C. savignyi chromosome 14 as no syntenic chromosome 14 was found in C. intestinalis.

Page 2: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 1

C. intestinalis chromosome 1

30

173

51

6462

5

162

14

27

31

11

1

107

35

p q

A

Page 3: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

q

C. sa

vign

yi c

hrom

osom

e 1

C. intestinalis chromosome 3

30

173

51

6462

5

162

14

27

31

11

1

107

35

p q

B

Page 4: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 2

C. intestinalis chromosome 9

289

118

132

156

140

55

235

58

4

C

Page 5: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 3

C. intestinalis chromosome 8

20

116

234

24

86

134

7

65

172207325

D

Page 6: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 4

C. intestinalis chromosome 2

19

96

17

85

226122

22

209324251

E

Page 7: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 5

C. intestinalis chromosome 5

91

220

48

12

60

133

206244

F

Page 8: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 6

C. intestinalis chromosome 10

37

56

44

0

G

Page 9: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 7

C. intestinalis chromosome 7

H

25

79

67

117

125

131

2

318

Page 10: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 8

C. intestinalis chromosome 14

I

238

76

49

26

335

165

239

Page 11: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 9

C. intestinalis chromosome 4

J

167

70

15

90

73

3

41

166

Page 12: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 11

C. intestinalis chromosome 6

K

77

23

155

151

247

Page 13: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 12

C. intestinalis chromosome 12

L

54

9

186

88

Page 14: Supplemental Figure 1 - Stanford Universitymendel.stanford.edu/.../Supp_Figure_1.pdf · 2008-05-16 · Supplemental Figure 1. (A-M) Distribution of alignments (Brudno et al. 2007)

C. sa

vign

yi c

hrom

osom

e 13

C. intestinalis chromosome 13

M

72

143

286


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