supplemental data - plant physiology...pbl16 6 salk_201102 pbl8 6 gk_625h05 pbl15 6 salk_055095...
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Supplemental Data
Supplemental Figure 1. Gene structures of PBL genes and location of T-DNA
insertions.
PBL structures were drawn using GSDS (Gene Structure Display Server). Inverted
triangles indicate the position of T-DNA insertions. Red arrows indicate gene direction
on the chromosome. Black arrows indicate RT-qPCR primer positions.
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Supplemental Figure 2. CRISPR-Cas9-mediated mutations of PBL6, PBL17, and 9
PBL25. 10
A, CRISPR-Cas9-mediated mutations of PBL6 in the rlck vii-1 quintuple mutant. B, 11
Mutations of PBL17 in the rlck vii-6 triple mutant were generated using the 12
CRISPR-Cas9 system. C, CRISPR-Cas9-mediated mutations of PBL25 in the rlck vii-2 13
triple mutant. The line numbers (#) refer to alleles created by CRISPR-Cas9. The 14
positive and negative numbers in parentheses indicate frame shifts in the mutant lines. 15
Dots indicate nucleotides not shown in the alignments. Dashed lines indicate sequence 16
deletions. 17
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Supplemental Figure 3. Expression profiles of RLCK VII members in response to 20
different molecular patterns. 21
The microarray data reveal several RLCK VII members that are transcriptionally 22
regulated in response to different patterns. Heat map displays the log2 transformed 23
ratio of pattern-triggered expression relative to the basal expression of each RLCK VII 24
gene. 25
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Supplemental Figure 4. Replicate ROS production data for Figure 2. 33
Pattern-triggered ROS production in all higher order mutants. Leaf strips were treated 34
with flg22 (A), elf18 (B), and chitin (C), and H2O2 production was measured. 35
Significant differences relative to WT are indicated by * (P<0.05), ** (P<0.01), and 36
*** (P<0.001) (Student’s t-test). 37
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Supplemental Figure 5. Chitin-triggered ROS production in single mutants. 40
ROS production triggered by chitin in single mutants of RLCK VII-4 (A), RLCK VII-5 41
(B), RLCK VII-7 (C), and RLCK VII-8 (D). Values are means of the sum of 42
luminescence units collected from all 20 time points over 30 min following the 43
addition of chitin ± SD, n≥6. Different letters denote significant differences at P ≤ 44
0.05 (Student’s t-test). 45
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Supplemental Figure 6. Replicate blots for Figure 4. 48
Mutants of RLCK VII-4 are compromised in chitin-triggered MAPK activation. 49
Seedlings of the indicated genotypes were treated with chitin or flg22 and harvested at 50
the indicated time points. MAPK activation was detected by immunoblot analysis 51
using anti-pERK antibody. Equal loading is demonstrated by Ponceau staining of 52
Rubisco (below). 53
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Supplemental Figure 7. RLCK VII-4 members are not required for elf18- and 60
Pep2-triggered MAPK activation. 61
Eight-day-old seedlings of the indicated genotypes were treated with elf18 or Pep2 and 62
harvested at the indicated time points. MAPK activation was detected by immunoblot 63
analysis using anti-pERK antibody. Equal loading is shown by Ponceau staining. 64
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Supplemental Figure 8. MAPK activation of RLCK VII-8 mutants. 67
MAPK activation triggered by different patterns was analyzed in indicated plants. 68
MAPK activation was analyzed by immunoblots using anti-pERK antibody. Equal 69
loading is shown by Ponceau staining. 70
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Supplemental Figure 9. MAPK activation triggered by flg22 and chitin. 74
Eight-day-old seedlings of the indicated genotypes were treated with flg22 or chitin and 75
collected at the indicated time points. An anti-pERK antibody was used to detect 76
MAPK activation by immunoblot analysis. The line numbers (#) refer to alleles created 77
by CRISPR-Cas9. The experiments were repeated three times with similar results. 78
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Supplemental Table 1. List of mutant lines and higher order mutants.
a: mutations generated by the CRISPR-Cas9 system.
Genes Subgroups Mutant lines Higher order mutants
PBL5 1 SALK_045613
PBL6 1 a
PBS1 1 pbs1-1PBL7 1 SALK_114130
PBL27 1 GK_088H03
PBL41 1 SALK_150918
PBL23 1 SALK_112111
PBL42(LIP2) 2 SALK_009528
PBL43(LIP1) 2 SALK_055909
PBL26 2 SALK_023374
PBL25 2 a
PBL24 2 SALK_072589
PBL21 3 SALK_025049
PBL22 3 SALK_045159
CDG1
PBL28 SALK_120599
PBL20 4 SALK_049965
PBL19 4 SALK_021064
PBL37 4 GK_090A05
PBL38 4 SAIL_416_A03
PBL39(PCRK1) 4 SALK_145629
PBL40(PCRK2) 4 SAIL_129_D02
PBL36 5 SAIL_885_B03
PBL35 5 SALK_039402
PBL34 5 SALK_067743
PBL17 6 a
PBL16 6 SALK_201102
PBL8 6 GK_625H05
PBL15 6 SALK_055095
PBL33 6
PBL12 6 SALK_017105
PBL14(RIPK) 6 ripkPBL13 6 GK_586B09
PBL30(CST) 7 SAIL_296_A06
PBL31 7 SAIL_273_C01
PBL32 7 SALK_113804
PBL10 8 SALK_001115
PBL9 8 GK_430G06
PBL11 8 SALK_046795
BIK1 8 SALK_005291
PBL1 8 SAIL_1236_D07
PBL29 SALK_050111
PBL2 9 SALK_149140
PBL3 9 SALK_039503
PBL18 9 SALK_097486
PBL4 9 SALK_097999
pbl5,6,7,27 pbs1-1
(rlck vii-1)
pbl24,25,26
(rlck vii-2)
pbl21,22
(rlck vii-3)
pbl19,20,37,38,39,40
(rlck vii-4)
bik1 pbl1,9,11
(rlck vii-8)
pbl2,3,4,18
(rlck vii-9)
pbl30,31,32
(rlck vii-7)
pbl8,16,17
(rlck vii-6)
pbl34,35,36
(rlck vii-5)