sgn workshop use cases

44
SGN Workshop Accessing SGN Data through Tools Susan R Strickler Boyce Thompson Institute for Plant Research SOL 2015 - Bordeaux

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Page 1: SGN Workshop Use Cases

SGN Workshop Accessing SGN Data through Tools

Susan R StricklerBoyce Thompson Institute for Plant Research

SOL 2015 - Bordeaux

Page 2: SGN Workshop Use Cases

Sol Genomics Network

Use Case I

• Find the Nicotiana ortholog of a tomato gene, Solyc10g047140.

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Sol Genomics Network

Use Case IIIsolgenomics.net

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Sol Genomics Network

Use Case 1

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Use Case 1

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Use Case 1

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Use Case I

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Use Case I

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Use Case I

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Use Case I

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Use Case I

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Use Case II

• Find genes annotated as self-incompatibility genes and align them.

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case II

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Use Case III

• Is Solyc01g049890 expressed and can you find natural variation?

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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Use Case III

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SGN Workshop, SOL 2015

Acknowledgements

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Sol Genomics Network

[email protected]

Thank you for your attention