scratchpads: biodiversity online, redefining publication
DESCRIPTION
Scratchpad talk presented by Simon Rycroft at BNCOD 2008 Biodiversity Informatics Workshop, Cardiff University, 10th July 2008TRANSCRIPT
Simon D. RycroftVincent S. Smith & Dave Roberts
Scratchpads“Biodiversity online”“Redefining publication”
Your data1
Published and reviewedon your site
3Uploaded
and tagged
2
What is a Scratchpad?
Your dataSpecimens
ImagesLiterature
DNA & PhylogeniesDescriptions
Taxonomy backbone• Classification import from uBio Classification Bank
• Import from tab delimited files in three differentformats
• Makes use of a core feature of Drupal
Auto tagging• Quick and easy
• Data available immediately after upload
• Works with any extra data that may be added to ataxonomy (vernacular names, synonymy)
Sucking lice (Anoplura) have around 500 species andrepresent the smaller of the two traditional suborders of lice.The Anoplura are all blood-feeding ectoparasites of mammals.They can cause localised skin irritations and are vectors ofseveral blood-borne diseases.
Children appear particularly susceptible to attracting lice,possibly due to their fine hair.
At least three species of Anoplura are parasites of humans; thehuman condition of being infested with sucking lice is calledpediculosis. Pediculus humanus is divided into two subspecies,Pediculus humanus humanus, or the body louse, sometimesnicknamed "the seam squirrel" for its habit of laying of eggs inthe seams of clothing, and Pediculus humanus capitis, or thehead louse. Phthirus pubis (the pubic louse) is the cause of thecondition known as crabs.
http://dev.catlife.myspecies.info/
On your site
Taxon pages• Content is displayed in “Panels” on “taxon pages”
• Panels is a plugin feature for Drupal provided by athird party
• Extended with “View controls”
Curate the web• View controls allows a user of a Scratchpad to
effectively curate content from the web.
• Currently have panels for:– Wikipedia
– Flickr
– Yahoo Images
– Biodiversity Heritage Library / Google scholar
– NCBI
– GBIF specimen location maps
Default Panels
Additional features• Enterprise backup
– TSM on the Scratchpads’ server
– Intend to include an additional tape archive
• Additional modules– Nested set query
– Tinytax taxonomy browser
– Autocomplete taxonomic name browsing
Scratchpad statisticsOver100,000 pages, and 650 contributors
• Contributors:– No more than 10% significantly active– Contributors in more than 30 countries
• Pages– Over 60 Sites– Largely made up of definitions and references, but also includes images,
specimens, descriptions, DNA sequences and maps.
Visitors
Key monthly statistics- 50,000 page views - 6,000 visitors- 8 minutes on site- 50% returning visits
Future developments• Help
• Improved taxonomy handling
• Export of data
Sand box & Information• http://scratchpads.eu
• http://sandbox.scratchpads.eu