science online 2010 open notebook science session
DESCRIPTION
Jean-Claude Bradley's slides for the Science Online 2010 conference at RTP, NC on January 17, 2010. This session was run jointly with Steve Koch and Cameron Neylon.TRANSCRIPT
![Page 1: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/1.jpg)
Open Notebook Science
Jean-Claude Bradley
January 17, 2010
Science Online 2010
Associate Professor of ChemistryDrexel University
![Page 2: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/2.jpg)
The NaH oxidation controversy
![Page 3: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/3.jpg)
Information spreads quickly through the blogosphere
![Page 4: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/4.jpg)
15% NMR yield
![Page 5: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/5.jpg)
![Page 6: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/6.jpg)
Khalid Mirza and Marshall Moritz
![Page 7: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/7.jpg)
![Page 8: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/8.jpg)
Top results on a Google search
![Page 9: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/9.jpg)
Motivation: Faster Science, Better Science
![Page 10: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/10.jpg)
Open Notebook Science Logos (Andy Lang, Shirley Wu)
Sharing: how much and when
![Page 11: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/11.jpg)
There are NO FACTS, only measurements embedded
within assumptions
Open Notebook Science maintains the integrity of data
provenance by making assumptions explicit
![Page 12: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/12.jpg)
TRUST
PROOF
![Page 13: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/13.jpg)
The Log makes Assumptions Explicit
![Page 14: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/14.jpg)
The Rationale of Findings Explicit
![Page 15: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/15.jpg)
Raw Data Made Public
Splatter?
Some liquid
![Page 16: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/16.jpg)
YouTube for demonstrating experimental YouTube for demonstrating experimental set-upset-up
![Page 17: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/17.jpg)
Calculations Made Public on Google Spreadsheets
![Page 18: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/18.jpg)
Revision History on Google Spreadsheets
![Page 19: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/19.jpg)
Wiki Page History
![Page 20: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/20.jpg)
Comparing Wiki Page Versions
![Page 21: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/21.jpg)
Proof of Purity with interactive NMR spectrum using JSpecView and
JCAMP-DX
![Page 22: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/22.jpg)
Linking to Molecules in Chemistry Databases
![Page 23: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/23.jpg)
(Andy Lang, Tony Williams)
Open Data JCAMP spectra for education
(Andy Lang, Tony Williams, Robert Lancashire)
![Page 24: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/24.jpg)
Link Spectral Game to Open Educational Content
![Page 25: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/25.jpg)
The Ugi reaction: can we predict precipitation?
Can we predict solubility in organic solvents?
![Page 26: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/26.jpg)
Crowdsourcing Solubility Data
![Page 27: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/27.jpg)
ONS Submeta Award Winners
![Page 28: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/28.jpg)
ONS Challenge Judges
![Page 29: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/29.jpg)
Solubilities collected in a Google Spreadsheet
![Page 30: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/30.jpg)
Rajarshi Guha’s Live Web Query using Google Viz API
![Page 31: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/31.jpg)
Data provenance: From Wikipedia to…
![Page 32: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/32.jpg)
…the lab notebook and raw data
![Page 33: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/33.jpg)
Students and Judges co-Authors on ONS Solubility Book
![Page 34: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/34.jpg)
•Concentration (0.4, 0.2, 0.07 M)•Solvent (methanol, ethanol, acetonitrile, THF)•Excess of some reagents (1.2 eq.)
How does Open Notebook Science fit with traditional publication?
![Page 35: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/35.jpg)
Paper written on Wiki
![Page 36: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/36.jpg)
References to papers, blog posts, lab notebook pages, raw
data
![Page 37: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/37.jpg)
Paper on Journal of Visualized Experiments (JoVE)
![Page 38: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/38.jpg)
Pre-print on Nature Precedings
![Page 39: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/39.jpg)
ChemSpider Automated Mark-up of Chemical Names
![Page 40: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/40.jpg)
How bad is it? Try to find the solubility EGCG?
![Page 41: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/41.jpg)
=2.3 g/L
WTF?!
![Page 42: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/42.jpg)
The End of the Chain of Provenance
![Page 43: Science Online 2010 Open Notebook Science Session](https://reader036.vdocuments.site/reader036/viewer/2022062405/554e9affb4c905fc368b521d/html5/thumbnails/43.jpg)
The Scandal of Bell’s Lab Notebook