ross stewart 827 ibol 2017 last[1]...poster id number:827 abstract based on flower morphology, the...

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Background: Gasteria Duval is a small succulent genus native to southern Africa. It predominantly occurs along the coastal regions of South Africa, encroaching into both Swaziland and Namibia. The taxonomy of the genus has been contentious due to the uncertainty in the number of species it includes as well as the limited number of diagnostic characteristics available to distinguish species within Gasteria. Currently, 25 species and 12 varieties are recognized. Based on the morphology of the pedicels the genus is divided into two sections: G. section Longiflorae Haw. (narrow elliptical flowers) and G. section Gasteria Duval (globose flowers). In the current study, existing molecular sequence data sets were supplemented by including all currently recognised species of Gasteria and by the addition of sequence data in an attempt to improve resolution within the group. Results: Representatives of all 25 species and 12 varieties of Gasteria were collected and sequenced for the core barcoding regions (matK, and rbcLa) and the additional markers (psbA-trnH, trnL-F, ycf1, ITS1). The genus Gasteria was strongly supported as monophyletic. However, relationships among species based on barcoding alone is less satisfactory. The inclusion of additional markers improved resolution within the genus and highlighted the morphological sections G. section Longiflorae and G. section Gasteria as not monophyletic. Significance: This study contributes to the first comprehensive phylogenetic insight into the taxonomic relationship within the genus Gasteria Duval.. DNA barcoding and systematics of the southern African endemic genus Gasteria (Asphodelaceae) Ross D. Stewart, Ronny M. Kabongo, Zandisile E. Shongwe, Michelle van der Bank. African Centre for DNA Barcoding, University of Johannesburg, P. O. BOX 524, Auckland Park, 2006, Johannesburg, South Africa Poster ID Number:827 Abstract Based on flower morphology, the genus Gasteria is divided into two sections: Section G. Longiflorae Haw. (further divided into two series: Longifoliae and Multifariae) and Section G. Gasteria Duval (further divided into two series: Gasteria and Namaquana). Figure 1: Flower illustrations representing the various series. Longifoliae does not have an inflated perianth and is 25-50 mm long. Multifariae does not have an inflated perianth and is 18-33 mm long. Gasteria has an inflated perianth and is 12-22 mm long. Namaquana has a slightly inflated perianth and is 25-45 mm long 1 . Figure 2: (a) G. acinacifolia (J. Jacq.) Haw within series Longifoliae, (b) G. vlokii van Jaarsv. within series Multifariae, (c) G. baylissiana Rauh within series Gasteria, (d) G. pillansii within series Namaquana. Introduction (b) (c) (d) (a) Gerhard Bock© Sampling: Specimens representing all Gasteria species were collected. Aloe, Astroloba and Haworthiopsis were selected as outgroup. Molecular methods: DNA was extracted using the 10×CTAB method 2 from silica-dried material. Standard protocols were used to sequence rbcLa, matK, psbA-trnH, trnL, ycf1 and ITS1. Phylogenetic methods: DNA sequences were edited and aligned using Geneious v8.1.9. A Maximum Parsimony (MP) phylogenetic tree with bootstrap support and Bayesian inference was generated in Geneious. Material and Methods Results Figure 4: Species level discriminatory performance of rbcLa, matK, psbA- trnH, trnL, ycf1 and ITS1 Series Longifoliae Series Multifariae Series Gasteria Series Namaquana 1. Jaarsveld, E. J. V., Smith, G. F., & Van Wyk, B. E. 1994. A cladistic analysis of Gasteria (Aloaceae). South African Journal of Science, 90, 467- 470. 2. Doyle JJ, Doyle JL. 1987. A rapid isolation procedure for small amounts of leaf tissue. Phytochemical bulletin 19: 11-15. 3. Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (* and other methods), version 4.0a157 Sinauer Associates, Massachusetts. References Comparing the different nuclear and plastid markers within the genus Gasteria, it was found that ycf1 had the highest discriminatory power. Gasteria was highly supported as monophyletic. All but one (series Namaquana) of the current morphological groupings are non monophyletic. Given the morphological challenges, DNA identification may prove to be a suitable method to aid in the delimitation of Gasteria. Discussion and Conclusion Acknowledgements Figure 3: (a) G. rawlinsonii with serrated margins and rosulate leaf arrangement, (b) G. rawlinsonii with less pronounced serrations and distichous leaf arrangement. (c) G. bicolor with young green leaves, (d) G. bicolor with red-pink leaves. Each grew under different conditions. The figure above depicts the morphological problems that have resulted in numerous publications of various synonyms 1 . Recent assessment of the discriminatory power of the barcoding markers and multi loci phylogeny of the subfamily Alooideae highlighted a significant lack of resolution at species level. AIM OF THE STUDY This study aims to investigate the discriminatory power of the candidate plastid gene region ycf1 in the genus Gasteria. Problem Statement Figure 5: Phylogeny of Gasteria for the combined data set of rbcLa, matK, psbA- trnH, trnL, ycf1 and ITS1 (Bootstrap support = black, Posterior Probabilities = grey). (a) (b) (d) (c) 11% 36% 13% 22% 64% 5% Discrimination success (%) rbcLa matK psbA-trnH ITS1 trnL ycf1 0.94 1.0 0.85

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Page 1: Ross Stewart 827 iBOL 2017 LAST[1]...Poster ID Number:827 Abstract Based on flower morphology, the genus Gasteria is divided into two sections: Section G. Longiflorae Haw. (further

Background: Gasteria Duval is a small succulent genus native to southern Africa. It predominantly occurs along the coastal regions of South Africa, encroaching into both Swaziland andNamibia. The taxonomy of the genus has been contentious due to the uncertainty in the number of species it includes as well as the limited number of diagnostic characteristics available todistinguish species within Gasteria. Currently, 25 species and 12 varieties are recognized. Based on the morphology of the pedicels the genus is divided into two sections: G. sectionLongiflorae Haw. (narrow elliptical flowers) and G. section Gasteria Duval (globose flowers). In the current study, existing molecular sequence data sets were supplemented by includingall currently recognised species of Gasteria and by the addition of sequence data in an attempt to improve resolution within the group. Results: Representatives of all 25 species and 12varieties of Gasteria were collected and sequenced for the core barcoding regions (matK, and rbcLa) and the additional markers (psbA-trnH, trnL-F, ycf1, ITS1). The genus Gasteria wasstrongly supported as monophyletic. However, relationships among species based on barcoding alone is less satisfactory. The inclusion of additional markers improved resolution within thegenus and highlighted the morphological sections G. section Longiflorae and G. section Gasteria as not monophyletic. Significance: This study contributes to the first comprehensivephylogenetic insight into the taxonomic relationship within the genus Gasteria Duval..

DNA barcoding and systematics of the southern African endemic genus Gasteria (Asphodelaceae)

Ross D. Stewart, Ronny M. Kabongo, Zandisile E. Shongwe, Michelle van der Bank. African Centre for DNA Barcoding, University of Johannesburg, P. O. BOX 524, Auckland Park, 2006, Johannesburg, South Africa

Poster ID Number:827

Abstract

Based on flower morphology, the genus Gasteria is divided into twosections: Section G. Longiflorae Haw. (further divided into two series:Longifoliae and Multifariae) and Section G. Gasteria Duval (furtherdivided into two series: Gasteria and Namaquana).

Figure 1: Flower illustrations representing the various series. Longifoliae does not havean inflated perianth and is 25-50 mm long. Multifariae does not have an inflated perianthand is 18-33 mm long. Gasteria has an inflated perianth and is 12-22 mm long.Namaquana has a slightly inflated perianth and is 25-45 mm long1

.

Figure 2: (a) G. acinacifolia (J. Jacq.) Haw within series Longifoliae, (b) G. vlokii vanJaarsv. within series Multifariae, (c) G. baylissiana Rauh within series Gasteria, (d) G.pillansii within series Namaquana.

Introduction

(b) (c) (d)(a) Gerhard Bock©

• Sampling: Specimens representing all Gasteria species were collected.Aloe, Astroloba and Haworthiopsis were selected as outgroup.

• Molecular methods: DNA was extracted using the 10×CTAB method2 fromsilica-dried material. Standard protocols were used to sequence rbcLa, matK,psbA-trnH, trnL, ycf1 and ITS1.

• Phylogenetic methods: DNA sequences were edited and aligned usingGeneious v8.1.9. A Maximum Parsimony (MP) phylogenetic tree withbootstrap support and Bayesian inference was generated in Geneious.

Material and Methods

Results

Figure 4: Species level discriminatory performance of rbcLa, matK, psbA-trnH, trnL, ycf1 and ITS1

Series Longifoliae

Series Multifariae

Series Gasteria

Series Namaquana

1. Jaarsveld, E. J. V., Smith, G. F., & Van Wyk, B. E. 1994. A cladisticanalysis of Gasteria (Aloaceae). South African Journal of Science, 90, 467-470.

2. Doyle JJ, Doyle JL. 1987. A rapid isolation procedure for small amounts ofleaf tissue. Phytochemical bulletin 19: 11-15.

3. Swofford DL. 2002. PAUP*: phylogenetic analysis using parsimony (* andother methods), version 4.0a157 Sinauer Associates, Massachusetts.

References

Comparing the different nuclear and plastid markers within the genusGasteria, it was found that ycf1 had the highest discriminatory power.Gasteria was highly supported as monophyletic. All but one (seriesNamaquana) of the current morphological groupings are non monophyletic.Given the morphological challenges, DNA identification may prove to be asuitable method to aid in the delimitation of Gasteria.

Discussion and Conclusion

Acknowledgements

Figure 3: (a) G. rawlinsonii with serrated margins and rosulate leaf arrangement, (b) G.rawlinsonii with less pronounced serrations and distichous leaf arrangement. (c) G.bicolor with young green leaves, (d) G. bicolor with red-pink leaves. Each grew underdifferent conditions.

The figure above depicts the morphological problems that have resultedin numerous publications of various synonyms1. Recent assessment ofthe discriminatory power of the barcoding markers and multi lociphylogeny of the subfamily Alooideae highlighted a significant lack ofresolution at species level.

AIM OF THE STUDYThis study aims to investigate the discriminatory power of the candidateplastid gene region ycf1 in the genus Gasteria.

Problem Statement

Figure 5: Phylogeny of Gasteria for the combined data set of rbcLa, matK, psbA-trnH, trnL, ycf1 and ITS1 (Bootstrap support = black, Posterior Probabilities =grey).

(a) (b)

(d)(c)

11%

36%

13%

22%

64%

5%Dis

crim

inat

ion

succ

ess (

%)

rbcLa matK psbA-trnH ITS1trnL ycf1

0.94

1.0

0.85