progress in common bean breeding for angular leaf spot...
TRANSCRIPT
Progress in Common Bean Breeding for Angular Leaf Spot Resistance
T.L.P.O. Souza1, M.C. Gonçalves-Vidigal2, B. Raatz3, C.M. Mukankusi4, A.F.B. Abreu1, L.C. Melo1, M.A. Pastor-Corrales5
Common Bean Disease Workshop on Angular Leaf Spot and Root RotsProtea Hotel Kruger Gate, Skukuza, South Africa
July 20-24, 2015
1Embrapa Arroz e Feijão, Santo Antonio de Goiás, GO, Brazil; 2Universidade Estadual de Maringá, Maringá, PR, Brazil; 3CIAT, Bean Program, Cali, Colombia; 4CIAT, Bean Program,
Kawanda, Uganda; 5ARS-USDA, Beltsville, MD, USA.
July 20, 2015
Angular Leaf Spot (ALS)
Sources: Sami; Rava; Schwartz.
• ALS resistance genes- Named genes- Unnamed genes
• Major ALS resistance QTLs
• Molecular markers linked to resistance loci
• Genomic localization of resistance loci
• Breeding efforts to develop ALS resistant germplasm/cultivars- Africa (CIAT and partners)- Brazil (Embrapa/UFLA/UFV and partners)
Contents
ALS resistance genesNamed genes
Three independent dominant ALS resistance genes have been named, mapped and officially accepted by the BIC Genetics Committee
Gene symbolR source Gene pool LG Reference
Official Original
Phg-1 Phg-1 AND 277 Andean (A) Pv01Carvalho et al. (1998)Queiroz et al. (2004)Gonçalves-Vidigal et al. (2011)
Phg-2 Phg-? Mexico 54 Mesoamerican (MA) Pv08Sartorato et al. (2000)Namayanja et al. (2006)Mahuku et al. (2011)
Phg-3 Phg-ON Ouro Negro Mesoamerican (MA) Pv04
Corrêa et al. (2001)Faleiro et al. (2003) Gonçalves-Vidigal et al. (2013)Sanglard et al. (2013)
Markers linked to ALS resistance genesNamed genes
R Gene LGLinked marker
Marker type
Distance (cM)
R SourceGene pool
Reference
Phg-1 Pv01
OPH13490 RAPD 5.5
AND 277 A
Carvalho et al. (1998)SH13520 SCAR 5.6 Queiroz et al. (2004)
CV542014450 STS 0.7Gonçalves-Vidigal et al. (2011)
TGA1.1570 STS 1.3
Phg-2 Pv08OPE04650 RAPD 11.8
Mexico 54 MASartorato et al. (2000), Namayanja et al. (2006)
OPN02890 RAPD 5.9Sartorato et al. (2000)
SN02890 SCAR 5.9
Phg-3 Pv04
OPM02460 RAPD 5.3
Ouro Negro MA
Corrêa et al. (2001)OPBA16 RAPD 10.4 Faleiro et al. (2003)SBA16560 SCAR 7.1
Queiroz et al. (2004)SM02460 SCAR 5.3SF101050 SCAR 7.8
Gonçalves-Vidigal et al. (2013)g2303350 STS 0.0
ALS resistance genesNamed genes
AND 277 (gene Phg-1)
• Single dominant gene (Andean gene pool)- Carvalho et al. (1998): race 63-23 - Gonçalves-Vidigal et al. (2011): race 63-23
• Phg-1 + three dominant and independent genes (Caixeta et al. 2005): allelism tests using the races 31-17, 63-19 and 63-23
• Phg-1 and Co-14 are tightly linked (0.0 cM) to each other on Pv01(Gonçalves-Vidigal et al. 2011).
• Important resistance source used in Brazil and Southern Africa(Aggarwal et al. 2004; Ragagnin et al. 2009; Costa et al. 2010; Sanglard 2010; Rocha et al. 2012; Ddamulira 2014)
ALS resistance genesNamed genes
Mexico 54 (gene Phg-2)
• Single dominant gene (Mesoamerican gene pool)- Sartorato et al. (2000): race 63-19- Namayanja et al. (2006): race 63-39
• Three dominant and independent genes (Caixeta et al. 2005): allelism tests using the races 31-17, 63-19, 63-23 and 63-39
• ALS R genes in Mexico 54 and BAT 332 are located in the same locus on Pv08 - Namayanja et al. (2006): race 63-39
• Important resistance source used in Brazil and Pan-Africa (Oliveira et al. 2005; Namayanja et al. 2006; Sanglard 2010; Ddamulira 2014)
ALS resistance genesNamed genes
Ouro Negro (gene Phg-3)
• Single dominant gene (Mesoamerican gene pool)- Corrêa et al. (2001): race 63-39- Faleiro et al. (2003): races 31-55 and 63-31- Gonçalves-Vidigal et al. (2013): race 63-39
• Phg-3, Co-34 and Ur-14 are tightly linked to each other on Pv04(Faleiro et al. 2000, 2003; Souza et al. 2011; Gonçalves-Vidigal et al. 2013).
• Important resistance source used in Brazil(Ragagnin et al. 2009; Costa et al. 2010; Sanglard 2010; Rocha et al. 2012)
ALS resistance genesUnnamed genes
R source R geneGene pool
LG Reference
Cornell 49-242 Phg-? MA?
(Pv08)a
Nietsche et al. (2000) – Single dominant gene
Caixeta et al. (2005) – Single dominant gene
Mahuku et al. (2011) – Single dominant gene
Sanglard et al. (2013) – Single dominant gene
MAR 2 Phg-? MA?
(Pv08)
Ferreira et al. (2000) – Single dominant gene
Caixeta et al. (2005) – Two dominant and independent genes
Sanglard et al. (2013) – Single dominant gene
BAT 332 Phg-? (Phg-22) MA?
(Pv08)
Caixeta et al. (2003) – Single dominant gene
Namayanja et al. (2006) – Single dominant gene (Phg-22): ALS R genes in Mexico 54 and BAT 332 are located in the same locus
Sanglard et al. (2013) – Single dominant gene
G10474 Phg-? MA?
(Pv08)Mahuku et al. (2004) – Single dominant gene
Mahuku et al. (2011) – Single dominant gene
G5686Phg-? (PhgG5686A)Phg-? (PhgG5686B)Phg-? (PhgG5686C)
APv04Pv04 Mahuku et al. (2009) – Three dominant and complementary genesPv09
G10909Phg-? (PhgG10909A)
Phg-? (PhgG10909B)MA
Pv04Mahuku et al. (2011) – Two dominant and complementary genes
Pv08aPhysical position inferred based on allelism tests, mapping info and markers sequences/BLAST search.
Markers linked to ALS resistance genesUnnamed genes
R gene LG Linked markerMarker
typeDistance
(cM)R source
Gene pool
Reference
Phg-??
(Pv08) a
OPE04650 RAPD 12.5Cornell 49-242 MA Nietsche et al. (2000)OPN02890 RAPD 3.2
SN02890 SCAR 3.2
Phg-??
(Pv08)OPE04500 RAPD 5.8 MAR 2 MA Ferreira et al. (2000)
Phg-? (Phg-22)?
(Pv08)OPAA07950 RAPD 5.1
BAT 332 MA Caixeta et al. (2003)OPAO950 RAPD 5.8
Phg-??
(Pv08)PF5330 SCAR 5.0 G10474 MA
Mahuku et al. (2004)
(Andean gene pool)
Phg-? (PhgG5686A)Phg-? (PhgG5686B)Phg-? (PhgG5686C)
Pv04Pv04
Pv-ag004270
Pv-ctt001120
Pv-at007150
SSRSSRSSR
0.017.112.1
G5686 A Mahuku et al. (2009)Pv09
Phg-? (PhgG10909A) Pv04 Pv-gaat001164 SSR 13.0
G10909 MA Mahuku et al. (2011)Phg-? (PhgG10909B) Pv08
PF13310
PF9260
SE04709
SCAR
SCAR
SCAR
4.9
7.4
9.9aPhysical position inferred based on allelism tests, mapping info and markers sequences/BLAST search.
ALS resistance genesUnnamed genes
Cornell 49-242 (Phg-?)
• Single dominant gene (Mesoamerican gene pool)- Nietsche et al. (2000): race 31-17- Caixeta et al. (2005): races 63-23 and 31-17 - Mahuku et al. (2011): race 1-7- Sanglard et al. (2013): race 63-23
• OPE04650, OPN02890 and SN02890 markers linked to Phg-2 present in Mexico 54 (Sartorato et al. 2000) are also linked to the unnamed ALS R gene present in Cornell 49-242 (Nietsche et al. 2000)
• Gene position inferred based on mapping info: Pv08
• Resistance source used in Brazil(Nietsche et al. 2000; Sanglard 2010)
ALS resistance genesUnnamed genes
Cornell 49-242 (Phg-?)
• ALS R genes in Cornell 49-242 (Phg-?) and Mexico 54 (Phg-2) are not allelic, once they segregate independently- Caixeta et al. (2005): allelism tests using the races 63-23 and 31-17
• ALS R genes in Cornell 49-242 (Phg-?) and Ouro Negro (Phg-3) are not allelic, once they segregate independently- Sanglard et al. (2013): allelism test using the race 63-23
• ALS R gene in AND 277 (Phg-1) is from the Andean gene pool and located on Pv01
• Physical position suggests that the ALS R gene present in Cornell 49-242 (Phg-?) isan allele of Phg-2
- Fine mapping (???)
- Additional allelism tests (???)
MAR 2 (Phg-?)
• Single dominant gene (Mesoamerican gene pool)- Ferreira et al. (2000): race 63-39- Sanglard et al. (2013): race 63-23
• Two dominant and independent genes (Caixeta et al. 2005): allelism tests using the races 63-19, 63-23 and 63-39
• OPE04650 marker linked to Phg-2 present in Mexico 54 (Sartorato et al. 2000) is also linked to the unnamed ALS R gene present in MAR 2 (Ferreira et al. 2000)
• Gene position inferred based on mapping info: Pv08
• Resistance source used in Brazil(Oliveira et al. 2005; Sanglard 2010)
ALS resistance genesUnnamed genes
ALS resistance genesUnnamed genes
• Caixeta et al. (2005) - Allelism tests using the races 63-19, 63-23 and 63-39- ALS R genes in MAR 2 (Phg-?) and Mexico 54 (Phg-2) are allelic: races 63-19 and 63-39- ALS resistance genes in MAR 2 (Phg-?) and Mexico 54 (Phg-2) are NOT allelic: race 63-23
• ALS R genes in MAR 2 (Phg-?) and Ouro Negro (Phg-3) are not allelic, once they segregate independently- Sanglard et al. (2013): allelism tests using the races 63-23 and 63-39
• ALS R gene in AND 277 (Phg-1) is from the Andean gene pool and located on Pv01
• Physical position suggests that the ALS R gene present in MAR 2 is an allele of Phg-2
MAR 2 (Phg-?)
ALS resistance genesUnnamed genes
BAT 332 (Phg-?: Phg-22)
• Single dominant gene (Mesoamerican gene pool)- Caixeta et al. (2003): race 61-41- Namayanja et al. (2006): race 63-39- Sanglard et al. (2013): race 63-39
• ALS R genes in Mexico 54 and BAT 332 are located in the same locus - Namayanja et al. (2006): allelism test using the race 63-39
• Gene position inferred based on allelism test (Namayanja et al. 2006): Pv08
• Resistance source used in Brazil (Oliveira et al. 2005; Sanglard 2010)
• ALS R gene present in BAT 332 (Phg-?) = Phg-22
- Physical position
ALS resistance genesUnnamed genes
G10474 (Phg-?)
• Single dominant gene (Mesoamerican gene pool)- Mahuku et al. (2004): race 63-63- Mahuku et al. (2011): race 7-7
• The SCAR marker PF5330 linked to the ALS R gene present in G10474 and those linked to PhgG10909B in G10909 were mapped close to each other on Pv08 (Mahuku et al. 2011)- PF5330 marker is limited to the Andean gene pool.
• Gene position inferred based on mapping info and markers sequences/BLAST search: Pv08
• Fine-mapping is ongoing to support the fully characterization of the ALS R gene present in G10474 (Phg-?)
ALS resistance genesUnnamed genes
G5686 (Phg-?: PhgG5686A/PhgG5686B/PhgG5686C)
• Three dominant and complementary genes (Andean gene pool)- Mahuku et al. (2009): race 31-0
• Physical position (Mahuku et al. 2009)- PhgG5686A: Pv04- PhgG5686B: Pv04- PhgG5686C: Pv09
• Major ALS R genes identified in G5686 by Mahuku et al. (2009) were later considered as quantitative ALS R loci by further QTL stuidies(Oblessuc et al. 2012; Keller et al. 2015)- PhgG5686A ALS4.1GS.UD
- PhgG5686B ALS4.2GS
- PhgG5686C ALS9.1GS
ALS resistance genesUnnamed genes
G10909 (Phg-?: PhgG10909A/PhgG10909B)
• Two dominant and complementary genes (Mesoamerican gene pool)- Mahuku et al. (2011): race 63-63
• Physical position- PhgG10909A: Pv04- PhgG10909B : Pv08
• Allelism tests showed that the ALS R genes in G10909 were different from those in the Mesoamerican cultivars Mexico 54, MAR 2, G10474 and Cornell 49-242 (Mahuku et al. 2011)
• The G10909 ALS R gene resistant to the race 7-35 (PhgG10909B ) co-segregateswith the G10474 R gene – they are on the same locus or closely linked(Mahuku et al. 2011)
Major ALS resistance QTLs
a Named according to Miklas et al. (2010).
QTLa LG MarkerMarker
typeDistance
(cM)R Source
Gene pool
Reference
ALS10.1DG.UC Pv10
GATS11b – IAC137
SSR
13.4
CAL 143 A
Oblessuc et al. (2012)
GATS11b 6.0 Oblessuc et al. (2012, 2013, 2015)
ATA220 0.6Oblessuc et al. (2013)
PvM127 0.6
ALS4.2GS.UC Pv04 PvBR92 SSR 4.0Oblessuc et al. (2012)
ALS5.2UC Pv05 Pv-att006 SSR -
ALS4.1GS.UD Pv044M437
Marker50MAS_ALS4b
SNP (HRM)- G5686 A Keller et al. (2015)SNP (Tm)
SNO (LGC)
QTL studies support the quantitative nature of ALS resistance(Lopez et al. 2003; Teixeira et al. 2005; Mahuku et al. 2009; Mahuku et al. 2011)
Major ALS resistance QTLs
CAL 143 (ALS10.1DG,UC/ALS4.2GS,UC/ALS5.2UC)• Andean gene pool
• Effects of the ALS R QTLs in CAL 143 (Oblessuc et al. 2012)- ALS10.1DG.UC (Pv10): 16%–22% (major effects, significant in all experiments)- ALS4.2GS.UC (Pv04): 10.8% (natural infection in the field)- ALS5.2UC (Pv05): 9.4% (inoculated conditions in the greenhouse)
• Genealogy of CAL 143: Cargabello x AND 277- Caixeta et al. (2005) identified three major independent R genes in AND 277 by allelism tests using the races 31-17, 63-19 and 63-23, in addition to Phg-1.
Major ALS resistance QTLs
G5686 (ALS4.1GS,UD)
• Andean gene pool
• PhgG5686A (Pv04) ALS4.1GS.UD (Oblessuc et al. 2012; Keller et al. 2015)
• Effect of the QTL (Keller et al. 2012)- ALS4.1GS.UD (Pv04): 75% (inoculated conditions in the greenhouse – race 31-0)
Other QTL studies for ALS resistance are ongoing
Representation of ALS resistance lociPv01
Phg-1 (AND 277)
- - // - -
Co-14
(AND 277)(MDRK)
(Kaboon)(Perry Marrow)
(Widusa)
Co-14 (Pitanga)
Ur-9 (PC-50)
Co-xCo-w
(Jalo EEP558)- - // - -
Pv04
Phg-3 (Ouro Negro)
Co-34
(Ouro Negro)(Mexico 222)(Mexico 227)
(BAT 93/PI207262)
Ur-14 (Ouro Negro)
Ur-5 (Mexico 309)
Co-yCo-z
(Jalo EEP558)
Phg-?PhgG10909A(G10909)
ALS4.1GS,UD (G5686)ALS4.2GS,UC (CAL 143/G5686)
Phg-?PhgG5686APhgG5686B(G5686)
Representation of ALS resistance loci
- - // - -
- - // - -
Pv05
ALS5.2UC (CAL 143)
Representation of ALS resistance loci
- - // - -
- - // - -
Pv08
Phg-2 (Mexico 54)
Co-4 (TO)
(SEL 1308)(PI207262)
Ur-13(Redlands Pioneer)
(Kranskop)
Phg-? (Cornell 49-242)
Phg-?PhgG10909B (G10909)
Phg-? (MAR 2)
Phg-? Phg-22 (BAT 332)
Phg-? (G10474)
Representation of ALS resistance loci
- - // - -
- - // - -
- - // - -
Pv09
ALS9.1GS (G5686)Phg-?
PhgG5686C (G5686)
Representation of ALS resistance loci
- - // - -
- - // - -
Pv10
ALS10.1DG,UC (CAL 143)
Representation of ALS resistance loci
- - // - -
- - // - -
Representation of ALS resistance loci
Source: Ferreira, Campa & Kelly (2013).
Linkage groups showing anthracnose race-specific resistance genes directly mapped using different common bean genotypes
Highlights
• There are effective major loci controlling ALS resistance- Mesoamerican gene pool: Pv04 and Pv08- Andean gene pool: Pv01, Pv04 and Pv10
• QTL studies support the quantitative nature of ALS resistance
• Classical genetic analysis based on allelism tests are still important and necessary but presents limitations
• Direct or indirect mapping using info from molecular markers linked to known ALS R genes and QTLs is recommended to support the characterization of new ALS R loci
• Need and opportunity to develop specific SNP based markers- Lobaton et al. (in preparation) - G5686 and G10474
Breeding efforts to develop resistant varietiesAfrica – Identification of ALS resistance sources
• Resistance sources to a wide spectrum of Andean and Mesoamerican P. griseolaraces from Africa have been identified, under both field and screenhouse conditions (Pastor-Corrales et al. 1998; Stenglein et al. 2003; Mahuku et al., 2003, 2004, 2009; Wagara et al., 2011; Ddamulira et al., 2014)
- MEX 54, MAR 1, MAR 3, G5686, G10909, G4691, G 10613, G19833 and G10474
• Ddamulira et al. (2014): Screening with races 1:6, 21:39 and 17:39 of Mesoamerican origin and 61:63 of Andean origin
- U00297 (Ugandan landrace)- U0074- U351- U1-9
Breeding efforts to develop resistant varietiesAfrica – Identification of ALS resistance sources
• ECABREN/NDFRC selected bean genotypes were separately inoculated with 44 P. griseola races under greenhouse conditions:
- None of the genotypes was resistant to all races
- 13 genotypes were resistant (1-3) or moderately resistant (4-6) to at least 40 of the races
- Small-seeded genotypes ECAB 0754 and ECAB 0617 were resistant or moderately resistant to all races, except 33-39 and 58-18, respectively
- ECAB 0754 exhibited the highest level of resistance, with a mean disease severity of 1.1%.
All the resistant or moderately resistant genotypes were of the small-seeded bean types which are commercially less popular
Breeding efforts to develop resistant varietiesAfrica – Development of ALS resistance germplasm
The breeding strategy adopted by CIAT Uganda in developing ALS resistance germplasm has been three fold:
i. to introgress the gene Phg-2 (Mexico 54) into commercial susceptible varieties
ii. to combine ALS resistance with resistance to other diseases, in particular root rot and BCMV/BCMNV
iii. to pyramid the different ALS resistance genes into a single commercial variety
Combined crosses No. of lines evaluated
FieldALS (1-9 scale)
ScreenhousePythium (1-9 scale)
2 2.1-3.9 >3.9 1 1.1-3.9 >3.9
(CAL 96 x RWR 719) x (CAL 96 x MEX 54) 43 4 36 3 0 15 28
(CAL 96 x SCAM 80 CM/15) x (CAL 96 x MEX 54) 15 4 9 2 0 3 12
(CAL 96 x MLB 49-89 A) x (CAL 96 x MEX 54) 46 4 32 10 1 15 30
Total 104 12 77 15 1 33 70
Reaction of 104 lines from different crosses to combine ALS and Pythium root rot resistance
(Field and screenhouse conditions, Kawanda, 2006)
Breeding efforts to develop resistant varietiesAfrica – Development of ALS resistance germplasm
Lines resistant to both diseases have been selected
Breeding efforts to develop resistant varietiesAfrica – Development of ALS resistance germplasm
PedigreeNo. of families positive for:
SPE04(gene Phg-2)
SW13(gene I)
SPE04 and SW13
(CAL 96 x RW 719) x (CAL 96 x MEX 54) 35 11 16(CAL 96 x MLB-49-89A ) x (CAL 96 x MEX 54) 65 9 14(CAL 96 x SCAM 80CM/15) x (CAL 96 x MEX 54) 22 2 1Total 122 22 31
F5 progenies screened with the SCAR markers SPE04 and SW13
Breeding efforts to develop resistant varietiesAfrica – Gene pyramiding
Resistance sources (Ddamulira, 2014)
• Phg-1 (AND 277)
• Phg-2 (Mexico 54)
• Phg-? (G5686 – ALS4.1GS,UD)
Two popular susceptible varieties:
K132 and Kanyebwa
Highlights
• Important ALS resistance sources have been indentified and the inheritance of their resistance characterized
• Marker-assisted selection combined to phenotypic selection based on field and greenhouse screening is showing to be a promissory strategy to enhance the development of ALS R germplasm for Africa
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Resistance sources
• Phg-1 (AND 277)
• Phg-2 (Mexico 54)
• Phg-3 (Ouro Negro)
• Phg-? (Cornell 49-242)
• Phg-? (MAR 2)
• Phg-? (BAT 332)
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Source: Oliveira et al. (2005).
Phg-2 (Mexico 54)Phg-? (MAR 2/BAT 332)
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Source: Ragagnin et al. (2009).
Phg-1/Co-14 (AND 277)Phg-3/Co-34/Ur-14 (Ouro Negro)
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Source: Costa et al. (2010).
Black-seeded variety“Diamante Negro”
Phg-1/Co-14 (AND 277)Phg-3/Co-34/Ur-14 (Ouro Negro)
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Source: Rocha et al. (2012).
Phg-1/Co-14 (AND 277)Phg-3/Co-34/Ur-14 (Ouro Negro)
Breeding efforts to develop resistant varietiesBrazil – Gene pyramiding
Source: Sanglard (2010).
Phg-1/Co-14 (AND 277)Phg-3/Co-34/Ur-14 (Ouro Negro)
Phg-2 (Mexico 54)Phg-?
(Cornell 49-242)(MAR 2)
(BAT 332)
X
“Carioca” seeded background
cv. Rudácv. Pérola
Highlights
• Pyramiding effective Andean and Mesoamerican ALS R genes into a same variety is a likely strategy to provide wide and lasting resistance, as well as stack major genes and QTLs
• This strategy assisted by molecular markers is showing to be promissory to develop carioca-seeded elite germplasm resistant to ALS but presents limitations for cultivar development in Brazil
• The use of backcrossing as the only breeding strategy to stack target ALS R loci into a same elite line can not be a competitive approach for cultivar development, once the market demand can considerably diverge and the original recurrent parent could become obsolete regarding to other desirable agronomic traits
Breeding efforts to develop resistant varietiesBrazil – Multiple crosses and multisite field screening
- High yielding- High grain quality (“carioca”)- Adapted to mechanical harvesting- Resistance to ALS
cv. BRS Sublime(CNFC 10429)
- Genealogy: EMP 250 / 4 / A 769 /// A 429 / XAN 252 // V 8025 / PINTO UI 114 - Origin: CIAT, Cali, Colombia
Line YLD (Kg/ha) ALS (1-9)BRS Estilo 2,269.1 5.8BRS Sublime 2,532.9 2.7Perola 2,082.3 5.2
JOINT ANALYSIS19 Intermediate Field Trials (2006-2009)
Breeding efforts to develop resistant varietiesBrazil – Multiple crosses and multisite field screening
- High yielding- High grain quality (“carioca”)- Adapted to mechanical harvesting- Resistance to ALS
cv. BRS Sublime(CNFC 10429)
Line YLD (Kg/ha) ALS (1-9)BRS Estilo 1,959.5 5.2BRS Sublime 2,110.0 2.6Perola 2,036.9 4.6
JOINT ANALYSIS29 Final Field Trials (2009-2012)
Breeding efforts to develop resistant varietiesBrazil – Recurrent selection
Source: Borém & Miranda (2009).
Breeding efforts to develop resistant varietiesBrazil – Recurrent selection
Recombination of SelectedProgenies
Development ofProgenies
Evaluation ofProgenies
Source: Modified from Borém & Miranda (2009).
Source: Arantes et al. (2010).
Breeding efforts to develop resistant varietiesMinas Gerais, Brazil – Recurrent selection
• 7 carioca-seeded lines:Carioca MG, CI-140, CI-128, ANPAT 8.12, IAPAR 81, ESAL 693 and Pérola
• 10 ALS R sources:AN 512561, AND 277, Ouro Negro, CNC, CAL 143, MAR 2, MAR 1, G 5686, MA 4137 and Jalo
Base population - Partial diallel involving:
Source: Arantes et al. (2010).
Breeding efforts to develop resistant varietiesMinas Gerais, Brazil – Recurrent selection
Genetic gain after eight cycles of phenotypic recurrent selection for ALS resistance
Cycle
Lavras Lambari Patos de Minas Mean
ALS
(1-9)
YLD
(Kg/ha)
ALS
(1-9)
YLD
(Kg/ha)
ALS
(1-9)
YLD
(Kg/ha)
ALS
(1-9)
YLD
(Kg/ha)
1
4.9
(4.3-6.3) 2,403
6.2
(4.7-6.3) 2,517
4.1
(3.2-6.0) 1,873
5.1
(3.8-6.2) 2,264
2
4.6
(3.7-5.3) 2,260
5.6
(4.3-5.7) 2,800
4.3
(3.3-5.2) 2,350
4.8
(3.4-5.2) 2,470
3
4.2
(2.3-5.0) 2,047
3.7
(2.3-4.7) 2,530
3.2
(2.0-4.2) 1,970
3.7
(2.3-4.3) 2,182
4
3.8
(2.3-4.7) 2,463
3.9
(3.3-5.3) 3,140
3.3
(2.0-4.4) 2,605
3.7
(2.5-5.0) 2,736
5
4.6
(4.3-5.7) 2,542
4.9
(4.3-6.0) 2,430
3.9
(2.8-4.7) 2,305
4.5
(3.5-5.7) 2,426
6
4.2
(3.0-5.7) 2,402
5.3
(4.3-7.0) 2,687
3.8
(2.6-5.2) 2,135
4.4
(3.5-5.8) 2,408
7
3.8
(3.7-5.7) 2,683
4.0
(2.7-5.3) 2,940
3.5
(2.5-5.1) 2,183
3.8
(2.6-5.2) 2,602
Mean 4.3 2,400 4.8 2,720 3.7 2,203 4.3 2,441
Carioca MG 3.7 3,017 5.7 2,483 4.7 2,133 4.7 2,544
Pérola 5.3 2,542 6.3 2,617 5.0 1,592 5.6 2,250
Minas Gerais, Brazil – Recurrent selection
Central Brazil – Recurrent selectionProgenies (C0S2:4) AY (Kg/ha) ALS (1-9) AP (1-9) RL (1-9)SRCMA.127 1,736 2.0 5.0 4.5SRCMA.23 1,943 2.5 6.0 3.5SRCMA.26 2,977 2.5 6.0 5.5SRCMA.320 2,052 2.5 5.5 4.0BRS SUBLIME 1,733 3.0 5.5 4.5SRCMA.147 1,250 3.0 5.0 3.0SRCMA.216 1,636 3.0 5.0 4.0SRCMA.285 1,784 3.0 6.0 4.0SRCMA.162 2,065 3.5 7.0 6.5SRCMA.28 1,565 3.5 6.5 7.5SRCMA.29 1,565 3.5 7.0 7.0SRCMA.34 1,976 3.5 5.5 4.0SRCMA.75 1,564 3.5 5.0 4.0SRCMA.186 1,997 4.0 5.5 4.0SRCMA.198 2,141 4.0 5.5 6.0SRCMA.218 1,856 4.0 6.0 5.5SRCMA.229 2,396 4.0 5.0 4.0SRCMA.31 2,180 4.0 6.0 5.0SRCMA.314 1,849 4.0 6.5 5.5SRCMA.339 1,551 4.0 7.0 7.0SRCMA.73 1,943 4.0 5.0 4.5SRCMA.100 1,923 4.5 6.5 7.5SRCMA.241 1,744 4.5 5.5 4.5SRCMA.1 1,714 5.0 5.5 5.5SRCMA.206 1,951 5.5 4.5 4.0BRS HORIZONTE 1,234 9.0 5.0 3.0Mean (55 progenies) 1,800 5.0 5.6 4.8Mean (24 progenies) 1,859 3.8 5.7 4.9Mean (10 progenies) 1,857 3.0 5.6 4.7CV(%) 16.8 22.4 11.1 26.3F-value 6.55 3.8 2.4 2.4
Sources:Silva et al. (2015);
Melo et al. (in preparation)
JOINT ANALYSISThree Field Trials
(2013)
Genitors:1. MA-1-15-132. 2003200393. CNFC 107554. MA-1-2-10-15. CNFN 102846. MA-1-8-97. 2032003308. CF 220249
• Recurrent selection can be used as a breeding strategy to accumulate the greatest number of major and minor ALS R genes/QTLs distributed in different parents into a same elite line
• The use of recurrent selection assisted by molecular markers as a breeding strategy to combine different target alleles into a same progeny presenting other desirable agronomic traits and still using this and other superior progenies to form a promissory new base population is been adopted by the Embrapa/UFLA breeding program
• This strategy could be very useful to develop high agronomic performing and modern common bean cultivars harboring multipleALS R loci (major and minor genes)
Highlights
Thank you!Thiago SouzaCommon Bean Breeding and GeneticsEmbrapa Rice and BeansSanto Antônio de Goiás, GO, [email protected]+55 (62) 3533-2129