presentazione standard di powerpoint. franceschi.pdf · briefing in bioinformatics 2015 a multiplex...
TRANSCRIPT
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The arcades of the oldest university in the Western world
(founded in 1080)
Claudio FranceschiUniversity of Bologna & IRCCS Institute of
Neurological SciencesBologna, Italy
INFLAMMAGING
Patologie Mieloidi in Geriatria,
Bologna 6 Maggio 2016
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THE “REMODELLING” THEORY OF AGING(Franceschi et al., 1995; 2000)
The phenotype of old people is the result of the
capability of the body to respond / adapt to:
1. the damaging stimuli we are exposed lifelong;
2. the unrepaired molecular and cellular damages
continuously occurring in all tissues and organs,
which have a signaling capacity
REMODELLING(accumulation of damages/mutations +
local and systemic adaptive responses +
activation of the innate immune system)
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An example of adaptation/remodelling:the Inflammatory Theory of Aging
Ann. N.Y. Acad. Sci., 908, 244-254, 2000
Ann. N.Y. Acad. Sci., 908, 244-254, 2000
“chronic”, “low grade”, “sterile”
Inflammaging is based on studies on the evolution of immune response and stress from invertebrates to mammals
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innate immunity, response to stressors & inflammationare evolutionary conserved from invertebrates to mammals,
highly interconnected & macrophage-centered
Franceschi et al., 2000
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Metabolic syndromeType 2 Diabetes
Cardiovasculardiseases
Cancer
AlzheimerPD
PO Delirium
SarcopeniaFrailty
Depression
AGING INFLAMMAGING
The Inflammaging Theory of Aging
OA COPD
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The phenotype of CENTENARIANSis an inextricable and dynamic mix of
accumulating damages/functional declineand adaptive mechanisms In
flamm
aging
+++
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The phenotype of CENTENARIANSis an inextricable and dynamic mix of
accumulating damages/functional declineand adaptive mechanisms
An
ti-i
nfl
amm
agin
g Inflam
magin
g
+++
+++
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increasing levels of pro-inflammatory markers with age stimulate a corresponding augmentation in
anti-inflammatory markers
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Inflammaging and Anti-Inflammaging: a systemic perspective… Franceschi et al., MAD 2007
- circulating mtDNA -- inflamma-miR -- agalact N-glycans- some eicosanoids- gut microbiome
- RISK ALLELES - PROTECTIVE LIFESTYLE- PROTECTIVE ALLELES- some eicosanoids- some bacteria of gut
microbiome
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Inflammaging and Anti-Inflammaging: a systemic perspective… Franceschi et al., MAD 2007
- circulating mtDNA -- inflamma-miR -- agalact N-glycans- some eicosanoids- gut microbiome
- RISK ALLELES - PROTECTIVE LIFESTYLE- PROTECTIVE ALLELES- some eicosanoids- some bacteria of gut
microbiome
INFLAMMAGING
as an
Antagonistic
Pleiotropy
trait
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Fulvia, 109 anni, Sarzana (Italy)
Centenarians are characterized by high levels of circulating
pro- & anti-inflammatory
molecules:TGFb, Cortisol, IL-1RA,
Adiponectin
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It is time to put Inflammagingwithin the «New Geroscience»
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Kennedy et al., 2014
THE SEVEN HIGHLY INTERTWINEDPILLARS OF AGING
Inflammaging within a larger, systems biology, networking perspective (striking connectedness)
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• INFLAMMAGING is triggered by DAMAGE/GARBAGE,i.e. by a variety of "danger signals“which can be:
• 1. EXOGENOUS or PAMPs, i.e. viruses such as CMV or HIV, bacteria including the gut/oral-nasal/respiratory- & genito/urinary-tract MICROBIOTA and its products, parasites (“exogenous exposome”)
• 2. ENDOGENOUS/SELF or DAMPs, i.e. damaged and SENESCENT CELLS, CELL DEBRIS, altered/modified proteins & lipids, heme, ROS, extracellular mtDNA, cardiolipin, AGE, agalactosylated N-glycans, extracellular ATP, uric acid, ceramides,HMGB1, resulting fromorganelle/cell 3D: Damage/Death/Debris(“endogenous exposome”)
“GARBAGING” and INFLAMMAGING
Franceschi & Campisi, 2014
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• Eukaryotic cells contain a plethora of
INTRACELLULAR MOLECULES that are normally secured within
the confines of organelles and the plasma membrane.
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When cells are stressed/damaged or die as a result of exposure to pathogens and pathogen-products, nutrient excess, heat, radiation, sterile cellular injury after trauma, ischemia, or toxin-induced cell rupture these molecules, here collectively indicated as GARBAGE, can be actively liberated/secreted or passively released in two compartments:1. Within the cell2. In the extracellular milieu In both cases they act as Alarmins or Danger-Associated Molecular Patterns (DAMPs)
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THIS TYPE OF GARBAGINGAND INFLAMMAGING
IS PHYSIOLOGICALAND PRODUCED ALSO
BY YOUNG BODIES
“GARBAGING” and INFLAMMAGING
Franceschi & Campisi, 2014
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• With increasing age INFLAMMAGING is fostered by:
- INCREASED EXPOSURE to exogenous PAMPs and
"danger" signals (e.g. altered MICROBIOTA, persistent CMV) related to immunosenescence
- INCREASED GENERATION of endogenous/self DAMPs
and “danger” signals (e.g. increased number/amount of SENESCENT CELLS, CELL DEBRIS, DYSFUNCTIONAL MITOCHONDRIA)
- DECREASED EFFICIENCY OF GARBAGE DISPOSAL, i.e. UPS/PROTEASOMES, AUTO- and MITO-PHAGY
- INCREASED ACTIVATION of NF-kB & INFLAMMASOMES
GARBAGE, DANGER SIGNALS & INFLAMMAGING
Franceschi & Campisi, 2014
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EJI 2014
• Circulating mtDNA increases with age and is a powerful inflammatory stimulus contributing to inflammaging.
• The number of copies of circulating mtDNA is significantly correlated between siblings, suggesting that it is a familial/genetic trait.
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SELF GARBAGEmisplaced cell components – cell debris
INFLAMMAGING
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This perspective assumes that there is
a CONTINUUM between:
- young and old bodies
- aging physiology and pathology
Inflammaging would represent the progressive impairment with age of the physiological garbage disposal.
Franceschi & Campisi, 2014
GARBAGE, DANGER SIGNALS & INFLAMMAGING
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The complex relationship betweenaging and diseases
AGE-RELATEDCHRONICDISEASES
INFLAMMAGINGAGING
++++++
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HYPOTHESIS:
All/most age-associated diseases can be conceptualized as “segmental” accelerated aging syndromes, involving/affecting (for genetic and/or lifestyle reasons) specific organs/pathways (more than others), where the aging process and inflammaging propagated faster
INFLAMMAGING & age-related diseases
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Aging and the blurring of the distinction between self and not self
INFLAMMAGING and AGE-RELATED DISEASES can largely be conceptualized as the result of a low grade, progressive/slow, systemic, lifelong
AUTO-INFLAMMATORY PROCESS- driven by a peculiar type of chronic stimulation, - triggered by external and internal EXPOSOMES - favored by the functional decline of immune
responses, i.e. by what Roy Walford called“immunosenescence”.
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“IMMUNOBIOGRAPHY”& the “Liquid Immunological Self”
Aging and the blurring of self/non-self discrimination
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Waddington landscapeof the “liquid immunological self”
Grignolio et al., 2014
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“inflammaging is a fire”
There is evidence that:
• The aging phenotype is maintained by the aged micro/macro-environment.
• Inflammaging can propagate from cells to cells (and from organs to organs ?)
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Circulating inflamma-miR
MicroRNAs linking inflammaging,
cellular senescence and cancer
Olivieri F, Rippo MR, Monsurro V,
Salvioli S, Capri M , Procopio AD and
Franceschi C
Aging Research Reviews, 2013
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microRNA
Age-related diseases:
SASP: senescence
+ inflammation
Cancer
CVD
T2DM
AD
MiR-21
MiR-126
MiR-146a
MiR-21
MiR-126
MiR-146a
Pro-inflammatory
Circulating Inflamma-miRs
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YOUNGYOUNG OLDOLD
The model of heterochronic parabiosis
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A PROPAGATING VIEW OF AGING & INFLAMMAGING
• UNIBO-studied candidate stimuli present in the blood (circulating) which could maintainand propagate aging and inflammaging:
• circulating mtDNA
• agalattosylated N-glycans
• inflamma-miR
• gut microbiota products and metabolites
• lipid metabolites
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The «communicome» of an age-related diseaselikely contribute to propagate and accelerate the
aging process
AGE-RELATEDCHRONICDISEASES
INFLAMMAGING AGING
++++++
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“INFLAMMAGING is a unifying Biomedical Hypothesisparticularly attractive for Systems Medicine as it is multi-
scale, multi-organs and propagating among multiple spatial and temporal scales. INFLAMMAGING can be
mapped onto a MULTILAYER NETWORK capable to model and quantify the endogenous and exogenous interactions”
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A SYSTEMIC APPROACH TO AGING/INFLAMMAGING
Briefing in Bioinformatics 2015
A MULTIPLEX is a set of networks or layers with
common nodes. Each layer corresponds
to a given OMIC. Intra and inter-layers links are treated with the new concept of
MULTI-LINKS are (correlation and causal
relationships). The basal layer is
divided into GENETICSand ENVIRONMENT to quantify their relative
role in a given phenotypical trait
METAGENOMICS
TRANSCRIPTOMICS
METABOLOMICS
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A SYSTEMIC APPROACH TO AGING/INFLAMMAGING
Briefing in Bioinformatics 2015
A MULTIPLEX is a set of networks or layers with
common nodes. Each layer corresponds
to a given OMIC. Intra and inter-layers links are treated with the new concept of
MULTI-LINKS are (correlation and causal
relationships). The basal layer is
divided into GENETICSand ENVIRONMENT to quantify their relative
role in a given phenotypical trait
METAGENOMICS
TRANSCRIPTOMICS
METABOLOMICS
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The complex, systemic nature of INFLAMMAGINGCevenini et al., Curr Opin Clin Nutr Metab Care 2012
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The complex, systemic nature of INFLAMMAGINGCevenini et al., Curr Opin Clin Nutr Metab Care 2012
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Invisible Partnersbacteria in the different body sites
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Invisible Partnersbacteria in the different body sites
• 90% of bacteria reside within the gastrointestinal tract which harbors more than 500 different bacterial species, and about 1011
bacteria per gram of luminal content.• The human gut microbiome is functional and exerts both local
and long-distance effects involving hormonal intermediates, metabolites, and immunologic messengers .
• Host-microbe interactions thus have the potential to influence carcinogenesis and to promote the onset of others age-related diseases through mechanisms such as chronic inflammation, induction of genotoxic responses, alteration of the microenvironment, and metabolism
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PLoS One 2010
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Pathobionts
Butyrate
producers
C S Y
Changes in the microbiotacomposition can be
caused by and contributeinflammaging
CENTENARIAN MICROBIOTA AND INFLAMMATION
8.9% of the total variability of the GM is correlated
with the pattern of pro-inflammatory
cytokines
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By Illumina shotgun sequencing of the fecal microbial DNA from the centenarians, elderly and young people, we generated a total of 214.6 million paired-end reads, with an average of 23.8 million reads per subject.
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Metagenome function analysis
• We found an age-related reduction of the pathways involved in Short Chain Fatty Acids (SCFA) production via proteolytic fermentation.
• Genes involved in SCFA production, showed an inverse association with aging.
Rampelli et al., AGING 2013
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SCFA such as acetate,n-propionate, and n-butyrate:- are end products of bacterial anaerobic
fermentation of dietary fibers;- are secreted in high amounts by commensals
bacteria (e.g. clusters IV and XIV of Clostridia);- can be found at high concentrations in the large
intestine (e.g. 20mM n-butyrate in coloniclumen);
- are an important energy source - have strong anti-inflammatory properties
SCFA contribute to intestinal homeostasis
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• Acts as an energy source for normal colonic epithelialcells (throphic effect)
• Upregulates histone H3 acetylation at regulatoryregions of Foxp3 gene facilitating the differentiationof CD4+ T cells into Treg cells
• Induces TGF-beta secretion by epithelial cells• Triggers the production of cytoprotective cytokine
IL-18 and stimulate IL-10 and retinoic acid production by dendritic cells and macrophages
• Suppresses the proliferation of cancerous epithelialcells
Butyrate is mainly produced by clusters IV and XIV of Clostridia and contributes to the maintenance of
intestinal homeostasis:
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Aging Microbiome, Inflammagingand tryptophan metabolism
• We observed an age-related increase of genes involved in the tryptophan metabolism pathway
• This observation is in agreement with the reduction of tryptophan in the plasma of 100+
• Reduced plasma tryptophan levels are related to increase of immune activation.
• The increased consumption of tryptophan by the gut microbiota, affects its bioavailability within the host, and can contribute to inflammaging.
Rampelli et al., AGING 2013
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The gut-brain axisCryan and Dinan, 2012
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Biagi et al., Curr Biol in press
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• We highlighted the presence of a core microbiota of highly occurring, symbiotic bacterial groups (mostly belonging to the Ruminococcaceae, Lachnospiraceae and Bacteroidaceae families), that represented the majority of the intestinal ecosystem in terms of relative abundance in all samples, but with a cumulative percentage decreasing along with age.
• The ageing microbiota is characterized by an increasing contribution of subdominant species, as well as a rearrangement in their co-occurrence network.
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Biagi et al., Curr Biol in press
Anotherexample of age-related
re-modelling
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A total of 457 individuals:N= 143 centenariansN= 220 offspring of centenariansN= 73 offspring of non long-lived parentsN= 21 young subjects
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DNA methylation profile of 105+ Semi-supercentenarians (105+), their Offspring and
age- and sex-matched ControlsIllumina Infinium HumanMethylation450 BeadChip
(485577 CpG/genoma)Milano**
Bologna*
Calabria***
TOTALMean Age
(± std)Male (N)
Female (N)
105+ 29 33 20 82 105.5 ± 1.7 18 64
Offspring 28 22 13 63 69.8 ± 7.2 22 25
Controls 17 16 14 47 71.6 ± 8.0 26 37
TOTAL 74 71 47 192
* PI: Prof. Claudio Franceschi, DIMES, UNIBO
** PI: Prof. Daniela Mari, DIP. DI SCIENZE CLINICHE E DI COMUNITA', UNIVERSITÀ DI MILANO
***PI: Prof. Giuseppe Passarino, DIP. DI BIOLOGIA, ECOLOGIA E SCIENZE DELLA TERRA, UNIVERSITÀ DELLA CALABRIA
DATA ANALYSIS: Paolo Garagnani, Chiara Pirazzini, Steve Horvath
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Using data of more than 8000 samples present in 82 databases on DNA methylation data obtained by Illumina platforms (Infinium 450K and 27K) Steve Horvath (UCLA)
identified in the whole genome 353 CpGs whosemethylation level is a
MULTI-TISSUES PREDICTOR OF AGE which allows to estimate
EPIGENETIC AGE VERSUS CHRONOLOGICAL AGE
i.e. the DNA METHYLATION AGE (DNAm Age)
Steve HorvathDNA methylation age
of human tissues and cell types Genome Biology 2013, 14:R115
THE EPIGENETIC CLOCK
Correlation betweenDNAm age and chronological age = 0.97, error = 2.9 years
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Measures of epigenetic age acceleration/deceleration
50 60 70 80 90 100 110
50
60
70
80
90
100
DNAm age vs. age cor=0.89, p=5.6e-64
Age
DN
Am
Ag
e
A
Centenarian Control Offspring
Age Accel. p = 0.033
Status
Ag
e A
cce
l.0.0
0.5
1.0
1.5
2.0
2.5
3.0
75 46 63
B
Control Offspring
Age Accel. p = 0.012
Status
Ag
e A
cce
l.
0.0
0.5
1.0
1.5
2.0
2.5
3.0
46 63
C
Centenarian Control Offspring
Intrinsic Age Accel. p = 0.0085
Status
IEA
A
-1
0
1
2
3
75 46 63
D
Control Offspring
Intrinsic Age Accel. p = 0.0016
Status
IEA
A
-1
0
1
2
3
46 63
E
Centenarian Control Offspring
Extrinsic Age Accel. p = 0.52
Status
EE
AA
-1
0
1
2
3
75 46 63
F
Horvath et al., AGING 2015
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105+ and their offspring age more slowly than expected
based on their chronological age
According to this model, semi-supercentenarians are on average
8.7 years younger than expected based on chronological age, and offspring of 105+ are 5.2 years younger (p=0.00051) than
age- matched controls even after adjusting for sex and blood cell counts.
Horvath et al., AGING 2015
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BOLOGNA/UNIBO: the arcades of the oldest university in the
Western world (founded in 1080)
Thanksfor
yourattention