preparation of input file in bed format · gpat .retrieve annotation from mouse and human genomic...

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Preparation of input file in BED format

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Page 1: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il

Preparation of input file in BED format  

Page 2: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il

MACS14 output containing peak positions in BED format• Scores must be rounded to integers using ROUND(cell, 0) function

Page 3: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il

Peak file in correct BED format

Page 4: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il

How to obtain gene annotations of intergenic coordinates

Page 5: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 6: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 7: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 8: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 9: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il

How to obtain gene annotations near promoters

Page 10: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 11: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 12: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 13: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il
Page 14: Preparation of input file in BED format · GPAT .retrieve annotation from mouse and human genomic positions 16 Nov 2009: The thaliana assembly availaþle. last database update: Il