predator–prey dynamics of bald eagles and glaucous‐winged
TRANSCRIPT
Ecology and Evolution 20191ndash18 emsp|emsp1wwwecolevolorg
Received2August2018emsp |emsp Revised31January2019emsp |emsp Accepted1February2019DOI101002ece35011
O R I G I N A L R E S E A R C H
Predatorndashprey dynamics of bald eagles and glaucous‐winged gulls at Protection Island Washington USA
Shandelle M Henson12 emsp| Robert A Desharnais34emsp| Eric T Funasaki5emsp| Joseph G Galusha6emsp| James W Watson7emsp| James L Hayward1
ThisisanopenaccessarticleunderthetermsoftheCreativeCommonsAttributionLicensewhichpermitsusedistributionandreproductioninanymediumprovidedtheoriginalworkisproperlycitedcopy 2019 The Authors Ecology and EvolutionpublishedbyJohnWileyampSonsLtd
1DepartmentofBiologyAndrewsUniversityBerrienSpringsMichigan2DepartmentofMathematicsAndrewsUniversityBerrienSpringsMichigan3DepartmentofBiologicalSciencesCaliforniaStateUniversityLosAngelesCalifornia4ControlandDynamicalSystemsCaliforniaInstituteofTechnologyPasadenaCalifornia5DepartmentofComputerScienceandMathematicsSulRossStateUniversityAlpineTexas6DepartmentofBiologicalSciencesWallaWallaUniversityCollegePlaceWashington7WashingtonDepartmentofFishandWildlifeOlympiaWashington
CorrespondenceShandelleMHensonDepartmentofMathematicsAndrewsUniversityBerrienSpringsMIEmailhensonandrewsedu
Funding informationUSNationalScienceFoundationDivisionofMathematicalSciencesGrantAwardNumberDMS-1225529andDMS-1407040
Abstract1 Baldeagle(Haliaeetus leucocephalus)populationsinNorthAmericareboundedinthe latterpartof the twentiethcentury the resultof tightenedprotectionandoutlawing of pesticides such asDDTAn unintended consequence of recoverymay be a negative impact on seabirdsDuring the 1980s few bald eagles dis-turbed a large glaucous-winged gull (Larus glaucescens) colony on ProtectionIslandWashingtonUSAintheSalishSeaBreedinggullnumbersinthiscolonyrosenearly50duringthe1980sandearly1990sBeginninginthe1990sadra-maticincreaseinbaldeagleactivityensuedwithinthecolonyafterwhichbeganasignificantdeclineingullnumbers
2 Toexaminewhethertrendsinthegullcolonycouldbeexplainedbyeagleactivitywe fit a LotkandashVolterra-type predatorndashpreymodel to gull nest count data andWashingtonStateeagleterritorydatacollectedinmostyearsbetween1980and2016Bothspecieswereassumedtogrowlogisticallyintheabsenceoftheother
3 ThemodelfitsthedatawithgeneralizedR2=082supportingthehypothesisthatgulldynamicswereduelargelytoeaglepopulationdynamics
4 Point estimatesof themodel parameters indicated approach to stable coexist-enceWithinthe95confidenceintervalsfortheparametershowever110ofbootstrappedparametervectorspredictedgullcolonyextinction
5 Ourresultssuggestthattheeffectsofbaldeagleactivityonthedynamicsofalargegullcolonywereexplainedbyapredatorndashpreyrelationshipthatincludedthepossibilityof coexistencebutalso thepossibilityofgull colonyextinctionThisstudy serves as a cautionary exploration of the future not only for gulls onProtectionIslandbutforotherseabirdsintheSalishSeaManagersshouldmoni-tornumbersofnestsinseabirdcoloniesaswellaseagleactivitywithincoloniestodocumenttrendsthatmayleadtocolonyextinction
K E Y W O R D S
Baldeaglesglaucous-wingedgullsLotkandashVolterramodelpredatorndashpreydynamicsProtectionIslandSalishSea
2emsp |emsp emspensp HENSON Et al
1emsp |emspINTRODUC TION
Afteryearsofdeclinebaldeagle(Haliaeetus leucocephalus)popu-lationsthroughoutNorthAmericareboundedinthelatterpartofthe twentieth century following tightened protection reductionintheuseofleadshotbyhuntersandtheoutlawingofpesticidessuchasDDT(Hipfneretal2012WatsonStinsonMcAllisterampOwens2002)This recoveryhasprovidedoneof thegreat suc-cessstoriesoftheconservationmovement(MillarampLynch2006)NowherehasrecoverybeenmorepronouncedthaninthePacificNorthwestofNorthAmericawhereinlandwaterwayssuchastheSalishSeaColumbiaRiverandscoresofsmallerlakesandstreamsprovide ideal perching hunting and nesting opportunities forthese raptors (Elliott ElliottWilson Jones amp Stenerson 2011StinsonWatson ampMcAllister 2001Watson 2002Watson etal2002)
Anunintendedconsequenceofbaldeaglerecoveryhasbeenthenegativeimpactonseabirdswhicharealreadystressedbyoverfish-inggillnettingandhabitatdestruction(AtkinsampHeneman1987BlightDreverampArcese2015)Althoughpopulationsofsomesea-birdsmaybedeclining tohistoric levels (Elliottetal2011) localpopulationsofseabirdssuchascommonmurres(Uria aalge)maybethreatened (ParrishMarvierampPaine 2001)Numbersof salmonand other fish traditionally eaten by wintering bald eagles haveplummeted in recent years affecting eagle survival and possiblyresulting in their shift to other food sources (Elliott et al 2011)Seabirdsalwayshaveformedpartofthedietofeagles(Stalmaster1987)but increasingnumbersofeaglesandconcurrentprey fishshortageshaveresultedinincreasedeagleforagingonwaterfowlacauseforconcernamongornithologists(Elliottetal2011Hipfneretal2012MoulampGebauer2002Parrishetal2001SullivanHazlittampLemon2002VenneslandampButler2004WhiteHeathampGisborne2006)Potentialimpactsofbaldeaglepopulationsonmarine food-web structure appear to be due to resident eaglesratherthanoverwinteringeaglesandtheratesatwhichtheycon-sumeseabirdsasprey(HarveyGoodampPearson2012)
Bald eagles can impact seabirds both directly and indirectly(Hipfner et al 2012Parrish et al 2001) Themostobviousdi-recteffect is thekillingandeatingofadults juvenilesandeggs(DeGangeampNelson 1982HaywardGalusha ampHenson 2010HaywardGillettAmlanerampStout1977)Aseconddirecteffectistheextraexpenditureofenergyneededfornestingorfeedinginthepresenceofeagles(Hensonetal2012Parrishetal2001)An indirect effect results when disturbances displace breedingadults fromtheirnestsandexposeunprotectedeggsandyoungtootherpredators(Haywardetal2010)Asecondtypeofindi-recteffect involves changes indistributionpatterns in responseto thepresenceofeaglesForexampledivingwaterbirds in theStraitofGeorgiamovedawayfrominshorewatersanddabblingducksformedlargeraggregationsinshoreandweremorevigilantin response to increased eagle presence (Middleton Butler ampDavidson2018)
From1900totheearly1980sbreedingpopulationsofglaucous-wingedgulls (Larus glaucescens)markedly increased in theGeorgiaBasinoftheSalishSeaBritishColumbiaBy2010populationshaddeclined to about 50 of peak levels (Blight et al 2015 Sullivanetal2002)AstudythatincorporatedmoresouthernareasoftheSalishSeaalsoreportedoveralldeclinesfrom1975to2007(Bower2009) Protection IslandWashington located in the southeasternStrait of Juan de Fuca and centrally positioned in the Salish Sea
TA B L E 1 emspObserveddata
YearGull Nests Protection Island
Occupied Eagle Territories WA
Observed Eagles Protection Island
1980 3796 105
1981 126
1982 4068 138
1983 168
1984 4726 206
1985 231
1986 250
1987 4958 268
1988 309
1989 5045 369
1990 403
1991 4551 445
1992 468
1993 5189 493 9
1994 547 8
1995 558 19
1996 594 16
1997 4278 582 16
1998 666 24
1999 26
2000 17
2001 673 12
2002 2472 23
2003
2004 2925
2005 840 38
2006 2281
2007
2008 2830
2009 3018
2010 2495
2011 2364
2012 2093
2013 1850
2014 1589
2015 1832
2016 2512
emspensp emsp | emsp3HENSON Et al
has functionedasabreedingcenter formarinebirdssinceat leastthe 1940s (Power 1976) A large glaucous-winged gull colony hadbecome established by the early 1960s (Richardson 1961) TodayRhinoceros auklets (Cerorhinca monocerata) glaucous-wingedgullspigeon guillemots (Cepphus columba) andharbor seals (Phoca vitu‐lina) breed there in large numbersAdult auklets gulls and guille-motsaswellastheeggsandchicksofgullsandtheafterbirthsandpupsofsealsallserveasfoodfornestingandvisitingeagles(CowlesGalushaampHayward2012Hayward2009Haywardetal2010)
During the 1980s few eagle disturbances of the gull colonyonProtection IslandsViolet Pointwere noted and from1980 to1993 gull nest numbers increased by 37 (3796ndash5189 Table 1)Beginninginthe1990showeveradramaticriseinbaldeagleactiv-ityoverandwithinthecolonywasobserved(GalushaampHayward2002Haywardetal2010)withasignificantdeclineinnumbersofbreedinggullsatthesite(Cowlesetal2012)Baldeaglesconstitutetheonlysignificantsourceofinterspecificpredationonthegullsinthiscolony(Haywardetal2014)ThedeclineoftheVioletPointgullpopulationbeganabout1990 (Table1)slightly later thandeclinesfortheSalishSeagenerally(Blightetal2015)butotherwiseVioletPointtrendsparalleledthosereportedfortheregionAlthoughsys-tematiccountsofgullsnestingontheupperplateauofProtectionIslandhavenotbeenmadenestsarenowabsentfromseveralareasthatoncecontainednestinggullsandnestinghasnotexpandedintootherareasoftheisland(JLHaywardunpublishedobservations)
ThedynamicsoftheVioletPointgullcolonybegtwoquestionsFirstistheobserveddeclinecausedatleastinpartbyeagleactiv-itySecond are this andother seabirdpopulationsmerelydeclin-ing to historic levels or are their fates less certain In this studywe usemathematicalmodeling techniques to investigatewhetherthedynamictrendsinnumbersofgullnestsontheVioletPointcol-onycanbeexplainedbythedynamicsinnumbersofoccupiedeagleterritories inWashingtonState a proxy for numbersof eaglesonProtectionIslandandwhetherthereisanapproachtostablecoex-istenceforgullsandeagles
2emsp |emspMATHEMATIC AL MODEL
21emsp|emspClassic LotkandashVolterra predatorndashprey model
IntheirclassicpaperonCanadalynx(Lynx canadensis)andsnowshoehare(Lepus americanus)populationsEltonandNicholson(1942)used100-yearrecordsfromtheHudsonBayCompanyonthenumbersofpeltspurchasedfromtrappersTheclassicpredatorndashpreycyclesoftheoreticalecology(Figure1a)oftenillustratedwithlynx-haredataareproducedbytheLotkandashVolterrapredatorndashpreyordinarydiffer-entialequationmodel(Henson2012Lotka1925Volterra1926)
HeretheldquoprimerdquodenotesthederivativewithrespecttotimeGandE refer tonumbersordensitiesofprey (gulls in this context) and
predators (eagles)agt0 is the per capita growth rate of the preypopulation in theabsenceof thepredatorsbgt0 is thepercapitadeclinerateofthepredatorpopulationintheabsenceofpreyα gt 0 isthepredationrate(theprobabilityperunittimethatagivenpreyindividualwillbetakenbyagivenpredator)andβgt0istheconver-sionrateofpreyintopredators
Theclassicpredatorndashpreymodel (1)hastwomajordeficienciesFirstthepreypopulationgrowsexponentiallywithoutboundintheabsenceofpredatorsandsecondthepredatorpopulationdeclinesexponentially to extinction in the absence of the prey Neither ofthesescenarios is feasible inmostecologicalcommunitiesbecausepopulation growth is always eventually bounded by self-limitationandpredatorsusuallycanswitchpreyandhencedonotdeclinetoex-tinctionwiththeremovalofasinglepreyspeciesThisistrueforbaldeagleswhichareconsideredopportunisticforagers(Buehler2000)
22emsp|emspGull‐eagle predatorndashprey model
ToexaminetherelationshipbetweentheVioletPointgullcolonyandeagleactivityintermsofapredatorndashpreyinteractionwemodifiedthe LotkandashVolterra predatorndashprey model (1) to include a multiplepreybaseforeaglesandself-limitationtermsforbothgullsandea-glesInparticularweusedtheLotkandashVoterra-typeordinarydiffer-entialequationmodel(Ricklefs1990)
where GandE arethenumbersofgullandeaglepairsrespectivelyratherthanindividualanimalsasintheoriginalLotkandashVolterramodelHerergt0andsgt0aretheinherentpercapitagrowthratesforgullsandeagles respectively at smallpopulationsizes and rKgt0andsCgt0aretheirratesofself-limitationTheparameterα gt0denotesthepredation rateof eaglesongulls andβ is the conversion rateofgullsintoeaglebirthsIntheabsenceoftheotherspecies(whenα = β=0) each species grows logistically with carrying capacitiesKgt0forgullsandCgt0foreagles
Model (2) does not predict sustained predatorndashprey cyclesrather it predicts only equilibrium dynamics Derivations of theequilibriaandstabilityformodel(2)areshowninAppendixAherewesimplysummarizethepossibilities
Model(2)hasfourequilibriumstatestheextinctionequilibrium(00)inwhichbothspeciesareabsentanequilibrium(K0)inwhicheaglesareabsentandgullsareattheircarryingcapacityKanequi-librium(0C)inwhichgullsareabsentandeaglesareattheircarryingcapacityC andacoexistenceequilibrium (GE)withgullandeaglenumbersgivenby
Therearetwomaindynamicalternatives
(1)G =aGminusGE
E =minusbE+GE
(2)G = rGminus
r
KG2minusGE
E = sEminuss
CE2+GE
(3)G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
4emsp |emsp emspensp HENSON Et al
bull If r gt αC thenbothG and E arepositive inEquation (3) and sothecoexistencestate(3) isbiologicallyfeasibleInthiscasetheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilibrium(GE)isstableThisequilibriumiseitherastablespiralorastablenodeThatisgullsandeagleseitherapproachtheco-existenceequilibriumthroughdampedpredatorndashpreyoscillations(Figure1b)orelsetheyapproachequilibriuminanonoscillatoryfashion In the lattercaseearly transientdynamicsmayresem-blepredatorndashpreyoscillationsbuttheoscillationsdonotpersist(Figure1c)
bull Ifr lt αCthecoexistenceequilibrium(3)isnotbiologicallyfeasi-ble (becausetheequilibriumnumberofgullsG isnegative)Theequilibria(00)and(K0)arestillunstablebuttheequilibrium(0C)inwhichgullsareabsentandeaglesareatcarryingcapacityC isnowstableThatisgullsapproachextinctionwhereaseaglesapproachtheircarryingcapacityCEarlytransientdynamicsmayresemblepredatorndashpreyoscillationsbeforegullseventuallygoex-tinct(Figure1d)
ThebiologicalinterpretationofthesealternativesisthefollowingThenumber r is the inherentnet reproductiverateofgullsandthenumberαC istherateatwhichgullsaretakenbyCeaglepairsIftheinherentnetreproductiverateofgullsislargerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsandeaglesbothsurviveandapproachapositivecoexistenceequilibriumIfhowevertheinher-entnetreproductiverateofgullsissmallerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsgoextinctandeaglesapproachtheircarryingcapacityC
3emsp |emspMATERIAL S AND METHODS
31emsp|emspGull nest count data for Violet Point Protection Island
Weusedglaucous-wingedgullnestcountdatacollectedbetween1980and2016atalargebreedingcolonyonVioletPointProtectionIslandNational Wildlife Refuge Washington (48deg07prime40PrimeN 122deg55prime3PrimeW)whichliesattheeasternendoftheStraitofJuandeFucaintheSalishSea(Figure2)TheVioletPointcolonyispopulatedbyglaucous-wingedgulls andglaucous-wingedgulltimeswestern gull (L occidentalis) hybrids(Bell19961997)Mostof thesehybrids resembleglaucous-wingedgullsmorethanwesterngulls(MegnaMoncrieffHaywardampHenson2014MoncrieffMegnaHaywardampHenson2013)hencewerefertothesebirdscollectivelyasglaucous-wingedgulls
Gullcountsfrom1980through2014werecarriedoutinsquadfashionasdescribedinGalushaVorvickOppandVorvick(1987)Alineofhumancountersspacedatdistancesappropriatefornestdensity and visibility moved forward over the colony with eachcounter tallyingall nestsbetweenherselforhimself and thenextcounterAfteradistanceof20ndash30mcountertalliesweresummedandrecordedandtheprocesswasrepeateduntiltheentirecolonywascoveredThe2015and2016countsweremadebymappingthepositionofeachnestwithArcGISDesktop10usingdatacollected
byaTrimble6000SeriesGPSTable1containsthefollowingcor-rectionsandadditionsfrompreviouslypublishedvalues(a)CountspublishedbyGalushaetal(1987)inadvertentlyomittedsomesec-tionsofthecolonythathadbeencountedandweaddedcountsforthesesections(b)countsfor2008ndash2010reportedbyCowlesetal(2012)didnotincludecountsofnestsborderingthewestshoreofthemarina(Figure2)absentbefore2008whichwenowadded(JGGalushaunpublisheddata)(c)countsfor2011ndash2015arenewlyreportedand(d)countsfor20132015and2016includeestimatesofuncountednestsborderingthewestshoreofthemarinaderivedfromlinearinterpolationbasedonthe2008ndash2012and2014countsforthatarea
32emsp|emspOccupied eagle territory data for Washington State
Weobtaineddataforthenumberofbreedingterritoriesoccupiedbybald eagles eachyear from1980 to1998 inWashingtonStatefromWatsonetal (2002)Weobtainedeagleoccupancydata for2001 and 2005 from the Wildlife Resource Data System of theWashingtonDepartmentofFishandWildlifeOlympiaWashington(Table1)
33emsp|emspCounts of nesting and non‐nesting eagles on Protection Island
Weobtainedannualmaximumnumbersofsubadultandadultbaldeagles observed simultaneously on Protection Island from 1993
F I G U R E 1 emspPredatorndashpreydynamics(a)Classicpredatorndashpreycycles(b)Coexistenceapproachedthroughdampedoscillations(c)Coexistenceapproachedinanonoscillatoryfashion(d)Extinctionofprey
emspensp emsp | emsp5HENSON Et al
through2002(Table1)fromHaywardetal(2010)Eaglecountsfor2005were fromunpublishedobservations (J LHaywardunpub-lisheddata)madeinthesamewayasthosepreviouslypublishedinHaywardetal(2010)
34emsp|emspWashington eagle territories as a proxy for eagles on Protection Island correlation analysis and Poisson regression
Numbersofoccupiedeagleterritories inWashingtonStatewerelargerandrelatively lessnoisy thannumbersofeaglesobservedonProtection IslandHence formodel fittingwewished tousea scaled version of the statewide eagle data as a proxy for theProtectionIslandeagledataTodeterminewhetherwecouldusethenumbersofoccupiedeagleterritoriesinWashingtonStateasaproxyforeagleactivityonProtectionIslandweperformedacor-relationanalysisonthenumberofeaglesobservedonProtectionIslandandthenumberofoccupiedeagleterritoriesinWashingtonState for the eight years these data overlapped (1993ndash19982001 2005 Table 1)We considered a strong positive correla-tion (ρge060) if significant at the 005 level a justification forusingtheproxyinfurtheranalysesBecauseourdependentvari-ableinvolvedcountdataweusedPoissonregressiontoobtaintheproxy equation that predicts the number of eagles observedonProtectionIslandasafunctionofthestatewidenumberofeagleterritoriesWeusedtheglmfitfunctioninMatlabreg(MathWorkstradeR2012a)withdispersiontoobtainthePoissonregressionequationrelatingthetwoquantitiesThedispersionparameterisestimated
F I G U R E 2 emspLocationofProtectionIslandandtheVioletPointglaucous-wingedgullcolony(enclosedbywhitepolygon)atthesoutheastendoftheStraitofJuandeFucaWashingtonUpperlinemapscreatedwithSimpleMapprandaerialphotographofislandcreatedwithGoogleEarthPro
Protecon Island
Washington
Idaho
Oregon
Brish Columbia
ProteconIsland
NStrait of
Juan de Fuca
1 kilometer
TA B L E 2 emspPointestimatesfortheparametersinmodel(2)andtheinitialconditionswith95confidenceintervalsEstimatesfortheequilibriawith95confidenceintervals
Estimate 95 CI
Parameter
G0 3663 (28474422)
E0 1067 (10181121)
r 02327 (0104406642)
K 7395 (618610444)
α 00002417 (0000146000005857)
s 01809 (0168201935)
C 8231 (76888890)
β 1876times10minus23 (2652times10minus632082times10minus13)
Equilibrium
G(GullNests) 1072 (01981)
E (EagleTerr) 8231 (76888890)
PIEagles 3494 (28584459)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
2emsp |emsp emspensp HENSON Et al
1emsp |emspINTRODUC TION
Afteryearsofdeclinebaldeagle(Haliaeetus leucocephalus)popu-lationsthroughoutNorthAmericareboundedinthelatterpartofthe twentieth century following tightened protection reductionintheuseofleadshotbyhuntersandtheoutlawingofpesticidessuchasDDT(Hipfneretal2012WatsonStinsonMcAllisterampOwens2002)This recoveryhasprovidedoneof thegreat suc-cessstoriesoftheconservationmovement(MillarampLynch2006)NowherehasrecoverybeenmorepronouncedthaninthePacificNorthwestofNorthAmericawhereinlandwaterwayssuchastheSalishSeaColumbiaRiverandscoresofsmallerlakesandstreamsprovide ideal perching hunting and nesting opportunities forthese raptors (Elliott ElliottWilson Jones amp Stenerson 2011StinsonWatson ampMcAllister 2001Watson 2002Watson etal2002)
Anunintendedconsequenceofbaldeaglerecoveryhasbeenthenegativeimpactonseabirdswhicharealreadystressedbyoverfish-inggillnettingandhabitatdestruction(AtkinsampHeneman1987BlightDreverampArcese2015)Althoughpopulationsofsomesea-birdsmaybedeclining tohistoric levels (Elliottetal2011) localpopulationsofseabirdssuchascommonmurres(Uria aalge)maybethreatened (ParrishMarvierampPaine 2001)Numbersof salmonand other fish traditionally eaten by wintering bald eagles haveplummeted in recent years affecting eagle survival and possiblyresulting in their shift to other food sources (Elliott et al 2011)Seabirdsalwayshaveformedpartofthedietofeagles(Stalmaster1987)but increasingnumbersofeaglesandconcurrentprey fishshortageshaveresultedinincreasedeagleforagingonwaterfowlacauseforconcernamongornithologists(Elliottetal2011Hipfneretal2012MoulampGebauer2002Parrishetal2001SullivanHazlittampLemon2002VenneslandampButler2004WhiteHeathampGisborne2006)Potentialimpactsofbaldeaglepopulationsonmarine food-web structure appear to be due to resident eaglesratherthanoverwinteringeaglesandtheratesatwhichtheycon-sumeseabirdsasprey(HarveyGoodampPearson2012)
Bald eagles can impact seabirds both directly and indirectly(Hipfner et al 2012Parrish et al 2001) Themostobviousdi-recteffect is thekillingandeatingofadults juvenilesandeggs(DeGangeampNelson 1982HaywardGalusha ampHenson 2010HaywardGillettAmlanerampStout1977)Aseconddirecteffectistheextraexpenditureofenergyneededfornestingorfeedinginthepresenceofeagles(Hensonetal2012Parrishetal2001)An indirect effect results when disturbances displace breedingadults fromtheirnestsandexposeunprotectedeggsandyoungtootherpredators(Haywardetal2010)Asecondtypeofindi-recteffect involves changes indistributionpatterns in responseto thepresenceofeaglesForexampledivingwaterbirds in theStraitofGeorgiamovedawayfrominshorewatersanddabblingducksformedlargeraggregationsinshoreandweremorevigilantin response to increased eagle presence (Middleton Butler ampDavidson2018)
From1900totheearly1980sbreedingpopulationsofglaucous-wingedgulls (Larus glaucescens)markedly increased in theGeorgiaBasinoftheSalishSeaBritishColumbiaBy2010populationshaddeclined to about 50 of peak levels (Blight et al 2015 Sullivanetal2002)AstudythatincorporatedmoresouthernareasoftheSalishSeaalsoreportedoveralldeclinesfrom1975to2007(Bower2009) Protection IslandWashington located in the southeasternStrait of Juan de Fuca and centrally positioned in the Salish Sea
TA B L E 1 emspObserveddata
YearGull Nests Protection Island
Occupied Eagle Territories WA
Observed Eagles Protection Island
1980 3796 105
1981 126
1982 4068 138
1983 168
1984 4726 206
1985 231
1986 250
1987 4958 268
1988 309
1989 5045 369
1990 403
1991 4551 445
1992 468
1993 5189 493 9
1994 547 8
1995 558 19
1996 594 16
1997 4278 582 16
1998 666 24
1999 26
2000 17
2001 673 12
2002 2472 23
2003
2004 2925
2005 840 38
2006 2281
2007
2008 2830
2009 3018
2010 2495
2011 2364
2012 2093
2013 1850
2014 1589
2015 1832
2016 2512
emspensp emsp | emsp3HENSON Et al
has functionedasabreedingcenter formarinebirdssinceat leastthe 1940s (Power 1976) A large glaucous-winged gull colony hadbecome established by the early 1960s (Richardson 1961) TodayRhinoceros auklets (Cerorhinca monocerata) glaucous-wingedgullspigeon guillemots (Cepphus columba) andharbor seals (Phoca vitu‐lina) breed there in large numbersAdult auklets gulls and guille-motsaswellastheeggsandchicksofgullsandtheafterbirthsandpupsofsealsallserveasfoodfornestingandvisitingeagles(CowlesGalushaampHayward2012Hayward2009Haywardetal2010)
During the 1980s few eagle disturbances of the gull colonyonProtection IslandsViolet Pointwere noted and from1980 to1993 gull nest numbers increased by 37 (3796ndash5189 Table 1)Beginninginthe1990showeveradramaticriseinbaldeagleactiv-ityoverandwithinthecolonywasobserved(GalushaampHayward2002Haywardetal2010)withasignificantdeclineinnumbersofbreedinggullsatthesite(Cowlesetal2012)Baldeaglesconstitutetheonlysignificantsourceofinterspecificpredationonthegullsinthiscolony(Haywardetal2014)ThedeclineoftheVioletPointgullpopulationbeganabout1990 (Table1)slightly later thandeclinesfortheSalishSeagenerally(Blightetal2015)butotherwiseVioletPointtrendsparalleledthosereportedfortheregionAlthoughsys-tematiccountsofgullsnestingontheupperplateauofProtectionIslandhavenotbeenmadenestsarenowabsentfromseveralareasthatoncecontainednestinggullsandnestinghasnotexpandedintootherareasoftheisland(JLHaywardunpublishedobservations)
ThedynamicsoftheVioletPointgullcolonybegtwoquestionsFirstistheobserveddeclinecausedatleastinpartbyeagleactiv-itySecond are this andother seabirdpopulationsmerelydeclin-ing to historic levels or are their fates less certain In this studywe usemathematicalmodeling techniques to investigatewhetherthedynamictrendsinnumbersofgullnestsontheVioletPointcol-onycanbeexplainedbythedynamicsinnumbersofoccupiedeagleterritories inWashingtonState a proxy for numbersof eaglesonProtectionIslandandwhetherthereisanapproachtostablecoex-istenceforgullsandeagles
2emsp |emspMATHEMATIC AL MODEL
21emsp|emspClassic LotkandashVolterra predatorndashprey model
IntheirclassicpaperonCanadalynx(Lynx canadensis)andsnowshoehare(Lepus americanus)populationsEltonandNicholson(1942)used100-yearrecordsfromtheHudsonBayCompanyonthenumbersofpeltspurchasedfromtrappersTheclassicpredatorndashpreycyclesoftheoreticalecology(Figure1a)oftenillustratedwithlynx-haredataareproducedbytheLotkandashVolterrapredatorndashpreyordinarydiffer-entialequationmodel(Henson2012Lotka1925Volterra1926)
HeretheldquoprimerdquodenotesthederivativewithrespecttotimeGandE refer tonumbersordensitiesofprey (gulls in this context) and
predators (eagles)agt0 is the per capita growth rate of the preypopulation in theabsenceof thepredatorsbgt0 is thepercapitadeclinerateofthepredatorpopulationintheabsenceofpreyα gt 0 isthepredationrate(theprobabilityperunittimethatagivenpreyindividualwillbetakenbyagivenpredator)andβgt0istheconver-sionrateofpreyintopredators
Theclassicpredatorndashpreymodel (1)hastwomajordeficienciesFirstthepreypopulationgrowsexponentiallywithoutboundintheabsenceofpredatorsandsecondthepredatorpopulationdeclinesexponentially to extinction in the absence of the prey Neither ofthesescenarios is feasible inmostecologicalcommunitiesbecausepopulation growth is always eventually bounded by self-limitationandpredatorsusuallycanswitchpreyandhencedonotdeclinetoex-tinctionwiththeremovalofasinglepreyspeciesThisistrueforbaldeagleswhichareconsideredopportunisticforagers(Buehler2000)
22emsp|emspGull‐eagle predatorndashprey model
ToexaminetherelationshipbetweentheVioletPointgullcolonyandeagleactivityintermsofapredatorndashpreyinteractionwemodifiedthe LotkandashVolterra predatorndashprey model (1) to include a multiplepreybaseforeaglesandself-limitationtermsforbothgullsandea-glesInparticularweusedtheLotkandashVoterra-typeordinarydiffer-entialequationmodel(Ricklefs1990)
where GandE arethenumbersofgullandeaglepairsrespectivelyratherthanindividualanimalsasintheoriginalLotkandashVolterramodelHerergt0andsgt0aretheinherentpercapitagrowthratesforgullsandeagles respectively at smallpopulationsizes and rKgt0andsCgt0aretheirratesofself-limitationTheparameterα gt0denotesthepredation rateof eaglesongulls andβ is the conversion rateofgullsintoeaglebirthsIntheabsenceoftheotherspecies(whenα = β=0) each species grows logistically with carrying capacitiesKgt0forgullsandCgt0foreagles
Model (2) does not predict sustained predatorndashprey cyclesrather it predicts only equilibrium dynamics Derivations of theequilibriaandstabilityformodel(2)areshowninAppendixAherewesimplysummarizethepossibilities
Model(2)hasfourequilibriumstatestheextinctionequilibrium(00)inwhichbothspeciesareabsentanequilibrium(K0)inwhicheaglesareabsentandgullsareattheircarryingcapacityKanequi-librium(0C)inwhichgullsareabsentandeaglesareattheircarryingcapacityC andacoexistenceequilibrium (GE)withgullandeaglenumbersgivenby
Therearetwomaindynamicalternatives
(1)G =aGminusGE
E =minusbE+GE
(2)G = rGminus
r
KG2minusGE
E = sEminuss
CE2+GE
(3)G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
4emsp |emsp emspensp HENSON Et al
bull If r gt αC thenbothG and E arepositive inEquation (3) and sothecoexistencestate(3) isbiologicallyfeasibleInthiscasetheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilibrium(GE)isstableThisequilibriumiseitherastablespiralorastablenodeThatisgullsandeagleseitherapproachtheco-existenceequilibriumthroughdampedpredatorndashpreyoscillations(Figure1b)orelsetheyapproachequilibriuminanonoscillatoryfashion In the lattercaseearly transientdynamicsmayresem-blepredatorndashpreyoscillationsbuttheoscillationsdonotpersist(Figure1c)
bull Ifr lt αCthecoexistenceequilibrium(3)isnotbiologicallyfeasi-ble (becausetheequilibriumnumberofgullsG isnegative)Theequilibria(00)and(K0)arestillunstablebuttheequilibrium(0C)inwhichgullsareabsentandeaglesareatcarryingcapacityC isnowstableThatisgullsapproachextinctionwhereaseaglesapproachtheircarryingcapacityCEarlytransientdynamicsmayresemblepredatorndashpreyoscillationsbeforegullseventuallygoex-tinct(Figure1d)
ThebiologicalinterpretationofthesealternativesisthefollowingThenumber r is the inherentnet reproductiverateofgullsandthenumberαC istherateatwhichgullsaretakenbyCeaglepairsIftheinherentnetreproductiverateofgullsislargerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsandeaglesbothsurviveandapproachapositivecoexistenceequilibriumIfhowevertheinher-entnetreproductiverateofgullsissmallerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsgoextinctandeaglesapproachtheircarryingcapacityC
3emsp |emspMATERIAL S AND METHODS
31emsp|emspGull nest count data for Violet Point Protection Island
Weusedglaucous-wingedgullnestcountdatacollectedbetween1980and2016atalargebreedingcolonyonVioletPointProtectionIslandNational Wildlife Refuge Washington (48deg07prime40PrimeN 122deg55prime3PrimeW)whichliesattheeasternendoftheStraitofJuandeFucaintheSalishSea(Figure2)TheVioletPointcolonyispopulatedbyglaucous-wingedgulls andglaucous-wingedgulltimeswestern gull (L occidentalis) hybrids(Bell19961997)Mostof thesehybrids resembleglaucous-wingedgullsmorethanwesterngulls(MegnaMoncrieffHaywardampHenson2014MoncrieffMegnaHaywardampHenson2013)hencewerefertothesebirdscollectivelyasglaucous-wingedgulls
Gullcountsfrom1980through2014werecarriedoutinsquadfashionasdescribedinGalushaVorvickOppandVorvick(1987)Alineofhumancountersspacedatdistancesappropriatefornestdensity and visibility moved forward over the colony with eachcounter tallyingall nestsbetweenherselforhimself and thenextcounterAfteradistanceof20ndash30mcountertalliesweresummedandrecordedandtheprocesswasrepeateduntiltheentirecolonywascoveredThe2015and2016countsweremadebymappingthepositionofeachnestwithArcGISDesktop10usingdatacollected
byaTrimble6000SeriesGPSTable1containsthefollowingcor-rectionsandadditionsfrompreviouslypublishedvalues(a)CountspublishedbyGalushaetal(1987)inadvertentlyomittedsomesec-tionsofthecolonythathadbeencountedandweaddedcountsforthesesections(b)countsfor2008ndash2010reportedbyCowlesetal(2012)didnotincludecountsofnestsborderingthewestshoreofthemarina(Figure2)absentbefore2008whichwenowadded(JGGalushaunpublisheddata)(c)countsfor2011ndash2015arenewlyreportedand(d)countsfor20132015and2016includeestimatesofuncountednestsborderingthewestshoreofthemarinaderivedfromlinearinterpolationbasedonthe2008ndash2012and2014countsforthatarea
32emsp|emspOccupied eagle territory data for Washington State
Weobtaineddataforthenumberofbreedingterritoriesoccupiedbybald eagles eachyear from1980 to1998 inWashingtonStatefromWatsonetal (2002)Weobtainedeagleoccupancydata for2001 and 2005 from the Wildlife Resource Data System of theWashingtonDepartmentofFishandWildlifeOlympiaWashington(Table1)
33emsp|emspCounts of nesting and non‐nesting eagles on Protection Island
Weobtainedannualmaximumnumbersofsubadultandadultbaldeagles observed simultaneously on Protection Island from 1993
F I G U R E 1 emspPredatorndashpreydynamics(a)Classicpredatorndashpreycycles(b)Coexistenceapproachedthroughdampedoscillations(c)Coexistenceapproachedinanonoscillatoryfashion(d)Extinctionofprey
emspensp emsp | emsp5HENSON Et al
through2002(Table1)fromHaywardetal(2010)Eaglecountsfor2005were fromunpublishedobservations (J LHaywardunpub-lisheddata)madeinthesamewayasthosepreviouslypublishedinHaywardetal(2010)
34emsp|emspWashington eagle territories as a proxy for eagles on Protection Island correlation analysis and Poisson regression
Numbersofoccupiedeagleterritories inWashingtonStatewerelargerandrelatively lessnoisy thannumbersofeaglesobservedonProtection IslandHence formodel fittingwewished tousea scaled version of the statewide eagle data as a proxy for theProtectionIslandeagledataTodeterminewhetherwecouldusethenumbersofoccupiedeagleterritoriesinWashingtonStateasaproxyforeagleactivityonProtectionIslandweperformedacor-relationanalysisonthenumberofeaglesobservedonProtectionIslandandthenumberofoccupiedeagleterritoriesinWashingtonState for the eight years these data overlapped (1993ndash19982001 2005 Table 1)We considered a strong positive correla-tion (ρge060) if significant at the 005 level a justification forusingtheproxyinfurtheranalysesBecauseourdependentvari-ableinvolvedcountdataweusedPoissonregressiontoobtaintheproxy equation that predicts the number of eagles observedonProtectionIslandasafunctionofthestatewidenumberofeagleterritoriesWeusedtheglmfitfunctioninMatlabreg(MathWorkstradeR2012a)withdispersiontoobtainthePoissonregressionequationrelatingthetwoquantitiesThedispersionparameterisestimated
F I G U R E 2 emspLocationofProtectionIslandandtheVioletPointglaucous-wingedgullcolony(enclosedbywhitepolygon)atthesoutheastendoftheStraitofJuandeFucaWashingtonUpperlinemapscreatedwithSimpleMapprandaerialphotographofislandcreatedwithGoogleEarthPro
Protecon Island
Washington
Idaho
Oregon
Brish Columbia
ProteconIsland
NStrait of
Juan de Fuca
1 kilometer
TA B L E 2 emspPointestimatesfortheparametersinmodel(2)andtheinitialconditionswith95confidenceintervalsEstimatesfortheequilibriawith95confidenceintervals
Estimate 95 CI
Parameter
G0 3663 (28474422)
E0 1067 (10181121)
r 02327 (0104406642)
K 7395 (618610444)
α 00002417 (0000146000005857)
s 01809 (0168201935)
C 8231 (76888890)
β 1876times10minus23 (2652times10minus632082times10minus13)
Equilibrium
G(GullNests) 1072 (01981)
E (EagleTerr) 8231 (76888890)
PIEagles 3494 (28584459)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp3HENSON Et al
has functionedasabreedingcenter formarinebirdssinceat leastthe 1940s (Power 1976) A large glaucous-winged gull colony hadbecome established by the early 1960s (Richardson 1961) TodayRhinoceros auklets (Cerorhinca monocerata) glaucous-wingedgullspigeon guillemots (Cepphus columba) andharbor seals (Phoca vitu‐lina) breed there in large numbersAdult auklets gulls and guille-motsaswellastheeggsandchicksofgullsandtheafterbirthsandpupsofsealsallserveasfoodfornestingandvisitingeagles(CowlesGalushaampHayward2012Hayward2009Haywardetal2010)
During the 1980s few eagle disturbances of the gull colonyonProtection IslandsViolet Pointwere noted and from1980 to1993 gull nest numbers increased by 37 (3796ndash5189 Table 1)Beginninginthe1990showeveradramaticriseinbaldeagleactiv-ityoverandwithinthecolonywasobserved(GalushaampHayward2002Haywardetal2010)withasignificantdeclineinnumbersofbreedinggullsatthesite(Cowlesetal2012)Baldeaglesconstitutetheonlysignificantsourceofinterspecificpredationonthegullsinthiscolony(Haywardetal2014)ThedeclineoftheVioletPointgullpopulationbeganabout1990 (Table1)slightly later thandeclinesfortheSalishSeagenerally(Blightetal2015)butotherwiseVioletPointtrendsparalleledthosereportedfortheregionAlthoughsys-tematiccountsofgullsnestingontheupperplateauofProtectionIslandhavenotbeenmadenestsarenowabsentfromseveralareasthatoncecontainednestinggullsandnestinghasnotexpandedintootherareasoftheisland(JLHaywardunpublishedobservations)
ThedynamicsoftheVioletPointgullcolonybegtwoquestionsFirstistheobserveddeclinecausedatleastinpartbyeagleactiv-itySecond are this andother seabirdpopulationsmerelydeclin-ing to historic levels or are their fates less certain In this studywe usemathematicalmodeling techniques to investigatewhetherthedynamictrendsinnumbersofgullnestsontheVioletPointcol-onycanbeexplainedbythedynamicsinnumbersofoccupiedeagleterritories inWashingtonState a proxy for numbersof eaglesonProtectionIslandandwhetherthereisanapproachtostablecoex-istenceforgullsandeagles
2emsp |emspMATHEMATIC AL MODEL
21emsp|emspClassic LotkandashVolterra predatorndashprey model
IntheirclassicpaperonCanadalynx(Lynx canadensis)andsnowshoehare(Lepus americanus)populationsEltonandNicholson(1942)used100-yearrecordsfromtheHudsonBayCompanyonthenumbersofpeltspurchasedfromtrappersTheclassicpredatorndashpreycyclesoftheoreticalecology(Figure1a)oftenillustratedwithlynx-haredataareproducedbytheLotkandashVolterrapredatorndashpreyordinarydiffer-entialequationmodel(Henson2012Lotka1925Volterra1926)
HeretheldquoprimerdquodenotesthederivativewithrespecttotimeGandE refer tonumbersordensitiesofprey (gulls in this context) and
predators (eagles)agt0 is the per capita growth rate of the preypopulation in theabsenceof thepredatorsbgt0 is thepercapitadeclinerateofthepredatorpopulationintheabsenceofpreyα gt 0 isthepredationrate(theprobabilityperunittimethatagivenpreyindividualwillbetakenbyagivenpredator)andβgt0istheconver-sionrateofpreyintopredators
Theclassicpredatorndashpreymodel (1)hastwomajordeficienciesFirstthepreypopulationgrowsexponentiallywithoutboundintheabsenceofpredatorsandsecondthepredatorpopulationdeclinesexponentially to extinction in the absence of the prey Neither ofthesescenarios is feasible inmostecologicalcommunitiesbecausepopulation growth is always eventually bounded by self-limitationandpredatorsusuallycanswitchpreyandhencedonotdeclinetoex-tinctionwiththeremovalofasinglepreyspeciesThisistrueforbaldeagleswhichareconsideredopportunisticforagers(Buehler2000)
22emsp|emspGull‐eagle predatorndashprey model
ToexaminetherelationshipbetweentheVioletPointgullcolonyandeagleactivityintermsofapredatorndashpreyinteractionwemodifiedthe LotkandashVolterra predatorndashprey model (1) to include a multiplepreybaseforeaglesandself-limitationtermsforbothgullsandea-glesInparticularweusedtheLotkandashVoterra-typeordinarydiffer-entialequationmodel(Ricklefs1990)
where GandE arethenumbersofgullandeaglepairsrespectivelyratherthanindividualanimalsasintheoriginalLotkandashVolterramodelHerergt0andsgt0aretheinherentpercapitagrowthratesforgullsandeagles respectively at smallpopulationsizes and rKgt0andsCgt0aretheirratesofself-limitationTheparameterα gt0denotesthepredation rateof eaglesongulls andβ is the conversion rateofgullsintoeaglebirthsIntheabsenceoftheotherspecies(whenα = β=0) each species grows logistically with carrying capacitiesKgt0forgullsandCgt0foreagles
Model (2) does not predict sustained predatorndashprey cyclesrather it predicts only equilibrium dynamics Derivations of theequilibriaandstabilityformodel(2)areshowninAppendixAherewesimplysummarizethepossibilities
Model(2)hasfourequilibriumstatestheextinctionequilibrium(00)inwhichbothspeciesareabsentanequilibrium(K0)inwhicheaglesareabsentandgullsareattheircarryingcapacityKanequi-librium(0C)inwhichgullsareabsentandeaglesareattheircarryingcapacityC andacoexistenceequilibrium (GE)withgullandeaglenumbersgivenby
Therearetwomaindynamicalternatives
(1)G =aGminusGE
E =minusbE+GE
(2)G = rGminus
r
KG2minusGE
E = sEminuss
CE2+GE
(3)G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
4emsp |emsp emspensp HENSON Et al
bull If r gt αC thenbothG and E arepositive inEquation (3) and sothecoexistencestate(3) isbiologicallyfeasibleInthiscasetheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilibrium(GE)isstableThisequilibriumiseitherastablespiralorastablenodeThatisgullsandeagleseitherapproachtheco-existenceequilibriumthroughdampedpredatorndashpreyoscillations(Figure1b)orelsetheyapproachequilibriuminanonoscillatoryfashion In the lattercaseearly transientdynamicsmayresem-blepredatorndashpreyoscillationsbuttheoscillationsdonotpersist(Figure1c)
bull Ifr lt αCthecoexistenceequilibrium(3)isnotbiologicallyfeasi-ble (becausetheequilibriumnumberofgullsG isnegative)Theequilibria(00)and(K0)arestillunstablebuttheequilibrium(0C)inwhichgullsareabsentandeaglesareatcarryingcapacityC isnowstableThatisgullsapproachextinctionwhereaseaglesapproachtheircarryingcapacityCEarlytransientdynamicsmayresemblepredatorndashpreyoscillationsbeforegullseventuallygoex-tinct(Figure1d)
ThebiologicalinterpretationofthesealternativesisthefollowingThenumber r is the inherentnet reproductiverateofgullsandthenumberαC istherateatwhichgullsaretakenbyCeaglepairsIftheinherentnetreproductiverateofgullsislargerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsandeaglesbothsurviveandapproachapositivecoexistenceequilibriumIfhowevertheinher-entnetreproductiverateofgullsissmallerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsgoextinctandeaglesapproachtheircarryingcapacityC
3emsp |emspMATERIAL S AND METHODS
31emsp|emspGull nest count data for Violet Point Protection Island
Weusedglaucous-wingedgullnestcountdatacollectedbetween1980and2016atalargebreedingcolonyonVioletPointProtectionIslandNational Wildlife Refuge Washington (48deg07prime40PrimeN 122deg55prime3PrimeW)whichliesattheeasternendoftheStraitofJuandeFucaintheSalishSea(Figure2)TheVioletPointcolonyispopulatedbyglaucous-wingedgulls andglaucous-wingedgulltimeswestern gull (L occidentalis) hybrids(Bell19961997)Mostof thesehybrids resembleglaucous-wingedgullsmorethanwesterngulls(MegnaMoncrieffHaywardampHenson2014MoncrieffMegnaHaywardampHenson2013)hencewerefertothesebirdscollectivelyasglaucous-wingedgulls
Gullcountsfrom1980through2014werecarriedoutinsquadfashionasdescribedinGalushaVorvickOppandVorvick(1987)Alineofhumancountersspacedatdistancesappropriatefornestdensity and visibility moved forward over the colony with eachcounter tallyingall nestsbetweenherselforhimself and thenextcounterAfteradistanceof20ndash30mcountertalliesweresummedandrecordedandtheprocesswasrepeateduntiltheentirecolonywascoveredThe2015and2016countsweremadebymappingthepositionofeachnestwithArcGISDesktop10usingdatacollected
byaTrimble6000SeriesGPSTable1containsthefollowingcor-rectionsandadditionsfrompreviouslypublishedvalues(a)CountspublishedbyGalushaetal(1987)inadvertentlyomittedsomesec-tionsofthecolonythathadbeencountedandweaddedcountsforthesesections(b)countsfor2008ndash2010reportedbyCowlesetal(2012)didnotincludecountsofnestsborderingthewestshoreofthemarina(Figure2)absentbefore2008whichwenowadded(JGGalushaunpublisheddata)(c)countsfor2011ndash2015arenewlyreportedand(d)countsfor20132015and2016includeestimatesofuncountednestsborderingthewestshoreofthemarinaderivedfromlinearinterpolationbasedonthe2008ndash2012and2014countsforthatarea
32emsp|emspOccupied eagle territory data for Washington State
Weobtaineddataforthenumberofbreedingterritoriesoccupiedbybald eagles eachyear from1980 to1998 inWashingtonStatefromWatsonetal (2002)Weobtainedeagleoccupancydata for2001 and 2005 from the Wildlife Resource Data System of theWashingtonDepartmentofFishandWildlifeOlympiaWashington(Table1)
33emsp|emspCounts of nesting and non‐nesting eagles on Protection Island
Weobtainedannualmaximumnumbersofsubadultandadultbaldeagles observed simultaneously on Protection Island from 1993
F I G U R E 1 emspPredatorndashpreydynamics(a)Classicpredatorndashpreycycles(b)Coexistenceapproachedthroughdampedoscillations(c)Coexistenceapproachedinanonoscillatoryfashion(d)Extinctionofprey
emspensp emsp | emsp5HENSON Et al
through2002(Table1)fromHaywardetal(2010)Eaglecountsfor2005were fromunpublishedobservations (J LHaywardunpub-lisheddata)madeinthesamewayasthosepreviouslypublishedinHaywardetal(2010)
34emsp|emspWashington eagle territories as a proxy for eagles on Protection Island correlation analysis and Poisson regression
Numbersofoccupiedeagleterritories inWashingtonStatewerelargerandrelatively lessnoisy thannumbersofeaglesobservedonProtection IslandHence formodel fittingwewished tousea scaled version of the statewide eagle data as a proxy for theProtectionIslandeagledataTodeterminewhetherwecouldusethenumbersofoccupiedeagleterritoriesinWashingtonStateasaproxyforeagleactivityonProtectionIslandweperformedacor-relationanalysisonthenumberofeaglesobservedonProtectionIslandandthenumberofoccupiedeagleterritoriesinWashingtonState for the eight years these data overlapped (1993ndash19982001 2005 Table 1)We considered a strong positive correla-tion (ρge060) if significant at the 005 level a justification forusingtheproxyinfurtheranalysesBecauseourdependentvari-ableinvolvedcountdataweusedPoissonregressiontoobtaintheproxy equation that predicts the number of eagles observedonProtectionIslandasafunctionofthestatewidenumberofeagleterritoriesWeusedtheglmfitfunctioninMatlabreg(MathWorkstradeR2012a)withdispersiontoobtainthePoissonregressionequationrelatingthetwoquantitiesThedispersionparameterisestimated
F I G U R E 2 emspLocationofProtectionIslandandtheVioletPointglaucous-wingedgullcolony(enclosedbywhitepolygon)atthesoutheastendoftheStraitofJuandeFucaWashingtonUpperlinemapscreatedwithSimpleMapprandaerialphotographofislandcreatedwithGoogleEarthPro
Protecon Island
Washington
Idaho
Oregon
Brish Columbia
ProteconIsland
NStrait of
Juan de Fuca
1 kilometer
TA B L E 2 emspPointestimatesfortheparametersinmodel(2)andtheinitialconditionswith95confidenceintervalsEstimatesfortheequilibriawith95confidenceintervals
Estimate 95 CI
Parameter
G0 3663 (28474422)
E0 1067 (10181121)
r 02327 (0104406642)
K 7395 (618610444)
α 00002417 (0000146000005857)
s 01809 (0168201935)
C 8231 (76888890)
β 1876times10minus23 (2652times10minus632082times10minus13)
Equilibrium
G(GullNests) 1072 (01981)
E (EagleTerr) 8231 (76888890)
PIEagles 3494 (28584459)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
4emsp |emsp emspensp HENSON Et al
bull If r gt αC thenbothG and E arepositive inEquation (3) and sothecoexistencestate(3) isbiologicallyfeasibleInthiscasetheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilibrium(GE)isstableThisequilibriumiseitherastablespiralorastablenodeThatisgullsandeagleseitherapproachtheco-existenceequilibriumthroughdampedpredatorndashpreyoscillations(Figure1b)orelsetheyapproachequilibriuminanonoscillatoryfashion In the lattercaseearly transientdynamicsmayresem-blepredatorndashpreyoscillationsbuttheoscillationsdonotpersist(Figure1c)
bull Ifr lt αCthecoexistenceequilibrium(3)isnotbiologicallyfeasi-ble (becausetheequilibriumnumberofgullsG isnegative)Theequilibria(00)and(K0)arestillunstablebuttheequilibrium(0C)inwhichgullsareabsentandeaglesareatcarryingcapacityC isnowstableThatisgullsapproachextinctionwhereaseaglesapproachtheircarryingcapacityCEarlytransientdynamicsmayresemblepredatorndashpreyoscillationsbeforegullseventuallygoex-tinct(Figure1d)
ThebiologicalinterpretationofthesealternativesisthefollowingThenumber r is the inherentnet reproductiverateofgullsandthenumberαC istherateatwhichgullsaretakenbyCeaglepairsIftheinherentnetreproductiverateofgullsislargerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsandeaglesbothsurviveandapproachapositivecoexistenceequilibriumIfhowevertheinher-entnetreproductiverateofgullsissmallerthantherateatwhichgullscanbetakenbyCeaglepairsthengullsgoextinctandeaglesapproachtheircarryingcapacityC
3emsp |emspMATERIAL S AND METHODS
31emsp|emspGull nest count data for Violet Point Protection Island
Weusedglaucous-wingedgullnestcountdatacollectedbetween1980and2016atalargebreedingcolonyonVioletPointProtectionIslandNational Wildlife Refuge Washington (48deg07prime40PrimeN 122deg55prime3PrimeW)whichliesattheeasternendoftheStraitofJuandeFucaintheSalishSea(Figure2)TheVioletPointcolonyispopulatedbyglaucous-wingedgulls andglaucous-wingedgulltimeswestern gull (L occidentalis) hybrids(Bell19961997)Mostof thesehybrids resembleglaucous-wingedgullsmorethanwesterngulls(MegnaMoncrieffHaywardampHenson2014MoncrieffMegnaHaywardampHenson2013)hencewerefertothesebirdscollectivelyasglaucous-wingedgulls
Gullcountsfrom1980through2014werecarriedoutinsquadfashionasdescribedinGalushaVorvickOppandVorvick(1987)Alineofhumancountersspacedatdistancesappropriatefornestdensity and visibility moved forward over the colony with eachcounter tallyingall nestsbetweenherselforhimself and thenextcounterAfteradistanceof20ndash30mcountertalliesweresummedandrecordedandtheprocesswasrepeateduntiltheentirecolonywascoveredThe2015and2016countsweremadebymappingthepositionofeachnestwithArcGISDesktop10usingdatacollected
byaTrimble6000SeriesGPSTable1containsthefollowingcor-rectionsandadditionsfrompreviouslypublishedvalues(a)CountspublishedbyGalushaetal(1987)inadvertentlyomittedsomesec-tionsofthecolonythathadbeencountedandweaddedcountsforthesesections(b)countsfor2008ndash2010reportedbyCowlesetal(2012)didnotincludecountsofnestsborderingthewestshoreofthemarina(Figure2)absentbefore2008whichwenowadded(JGGalushaunpublisheddata)(c)countsfor2011ndash2015arenewlyreportedand(d)countsfor20132015and2016includeestimatesofuncountednestsborderingthewestshoreofthemarinaderivedfromlinearinterpolationbasedonthe2008ndash2012and2014countsforthatarea
32emsp|emspOccupied eagle territory data for Washington State
Weobtaineddataforthenumberofbreedingterritoriesoccupiedbybald eagles eachyear from1980 to1998 inWashingtonStatefromWatsonetal (2002)Weobtainedeagleoccupancydata for2001 and 2005 from the Wildlife Resource Data System of theWashingtonDepartmentofFishandWildlifeOlympiaWashington(Table1)
33emsp|emspCounts of nesting and non‐nesting eagles on Protection Island
Weobtainedannualmaximumnumbersofsubadultandadultbaldeagles observed simultaneously on Protection Island from 1993
F I G U R E 1 emspPredatorndashpreydynamics(a)Classicpredatorndashpreycycles(b)Coexistenceapproachedthroughdampedoscillations(c)Coexistenceapproachedinanonoscillatoryfashion(d)Extinctionofprey
emspensp emsp | emsp5HENSON Et al
through2002(Table1)fromHaywardetal(2010)Eaglecountsfor2005were fromunpublishedobservations (J LHaywardunpub-lisheddata)madeinthesamewayasthosepreviouslypublishedinHaywardetal(2010)
34emsp|emspWashington eagle territories as a proxy for eagles on Protection Island correlation analysis and Poisson regression
Numbersofoccupiedeagleterritories inWashingtonStatewerelargerandrelatively lessnoisy thannumbersofeaglesobservedonProtection IslandHence formodel fittingwewished tousea scaled version of the statewide eagle data as a proxy for theProtectionIslandeagledataTodeterminewhetherwecouldusethenumbersofoccupiedeagleterritoriesinWashingtonStateasaproxyforeagleactivityonProtectionIslandweperformedacor-relationanalysisonthenumberofeaglesobservedonProtectionIslandandthenumberofoccupiedeagleterritoriesinWashingtonState for the eight years these data overlapped (1993ndash19982001 2005 Table 1)We considered a strong positive correla-tion (ρge060) if significant at the 005 level a justification forusingtheproxyinfurtheranalysesBecauseourdependentvari-ableinvolvedcountdataweusedPoissonregressiontoobtaintheproxy equation that predicts the number of eagles observedonProtectionIslandasafunctionofthestatewidenumberofeagleterritoriesWeusedtheglmfitfunctioninMatlabreg(MathWorkstradeR2012a)withdispersiontoobtainthePoissonregressionequationrelatingthetwoquantitiesThedispersionparameterisestimated
F I G U R E 2 emspLocationofProtectionIslandandtheVioletPointglaucous-wingedgullcolony(enclosedbywhitepolygon)atthesoutheastendoftheStraitofJuandeFucaWashingtonUpperlinemapscreatedwithSimpleMapprandaerialphotographofislandcreatedwithGoogleEarthPro
Protecon Island
Washington
Idaho
Oregon
Brish Columbia
ProteconIsland
NStrait of
Juan de Fuca
1 kilometer
TA B L E 2 emspPointestimatesfortheparametersinmodel(2)andtheinitialconditionswith95confidenceintervalsEstimatesfortheequilibriawith95confidenceintervals
Estimate 95 CI
Parameter
G0 3663 (28474422)
E0 1067 (10181121)
r 02327 (0104406642)
K 7395 (618610444)
α 00002417 (0000146000005857)
s 01809 (0168201935)
C 8231 (76888890)
β 1876times10minus23 (2652times10minus632082times10minus13)
Equilibrium
G(GullNests) 1072 (01981)
E (EagleTerr) 8231 (76888890)
PIEagles 3494 (28584459)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp5HENSON Et al
through2002(Table1)fromHaywardetal(2010)Eaglecountsfor2005were fromunpublishedobservations (J LHaywardunpub-lisheddata)madeinthesamewayasthosepreviouslypublishedinHaywardetal(2010)
34emsp|emspWashington eagle territories as a proxy for eagles on Protection Island correlation analysis and Poisson regression
Numbersofoccupiedeagleterritories inWashingtonStatewerelargerandrelatively lessnoisy thannumbersofeaglesobservedonProtection IslandHence formodel fittingwewished tousea scaled version of the statewide eagle data as a proxy for theProtectionIslandeagledataTodeterminewhetherwecouldusethenumbersofoccupiedeagleterritoriesinWashingtonStateasaproxyforeagleactivityonProtectionIslandweperformedacor-relationanalysisonthenumberofeaglesobservedonProtectionIslandandthenumberofoccupiedeagleterritoriesinWashingtonState for the eight years these data overlapped (1993ndash19982001 2005 Table 1)We considered a strong positive correla-tion (ρge060) if significant at the 005 level a justification forusingtheproxyinfurtheranalysesBecauseourdependentvari-ableinvolvedcountdataweusedPoissonregressiontoobtaintheproxy equation that predicts the number of eagles observedonProtectionIslandasafunctionofthestatewidenumberofeagleterritoriesWeusedtheglmfitfunctioninMatlabreg(MathWorkstradeR2012a)withdispersiontoobtainthePoissonregressionequationrelatingthetwoquantitiesThedispersionparameterisestimated
F I G U R E 2 emspLocationofProtectionIslandandtheVioletPointglaucous-wingedgullcolony(enclosedbywhitepolygon)atthesoutheastendoftheStraitofJuandeFucaWashingtonUpperlinemapscreatedwithSimpleMapprandaerialphotographofislandcreatedwithGoogleEarthPro
Protecon Island
Washington
Idaho
Oregon
Brish Columbia
ProteconIsland
NStrait of
Juan de Fuca
1 kilometer
TA B L E 2 emspPointestimatesfortheparametersinmodel(2)andtheinitialconditionswith95confidenceintervalsEstimatesfortheequilibriawith95confidenceintervals
Estimate 95 CI
Parameter
G0 3663 (28474422)
E0 1067 (10181121)
r 02327 (0104406642)
K 7395 (618610444)
α 00002417 (0000146000005857)
s 01809 (0168201935)
C 8231 (76888890)
β 1876times10minus23 (2652times10minus632082times10minus13)
Equilibrium
G(GullNests) 1072 (01981)
E (EagleTerr) 8231 (76888890)
PIEagles 3494 (28584459)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
6emsp |emsp emspensp HENSON Et al
in order to increase the P-values appropriately if the data areoverdispersed
35emsp|emspModel parameterization
Ecologists must consider several factors when fitting theoreti-calmodels to time series data Populations are subject to bothdemographic and environmental stochasticity resulting in ldquopro-cess noiserdquo (Dennis Ponciano Lele Taper amp Staples 2006)Inaccuracies in theestimatesofpopulationdensitiesalso resultin measurement error (Carpenter Cottingham amp Stow 1994)Althoughmethodshavebeendevelopedtodealwiththesefac-tors(egValpineampHastings2002)thedatademandsforthesemethodsare sometimesprohibitive Inparticular thedatausedhereraisechallengesformodelparameterestimationTherearegaps in the gull and eagle time series and in some years dataare not available for both species The sample sizes differ forgulls and eagles and the numbers for the two species are dif-ferent inmagnitude These difficulties preclude the application
of techniquesbasedonautoregressive timeseries thatunderliemanyof themethods and software commonly inuse (Bolker etal2013)
Toestimatetheparametersinmodel(2)wefirstscaledthestatevariablesGandEaswellasthedatabydividingbytheobservedstandard deviations σg and σe respectively (that is G=G∕120590g andE=E∕120590e)toscalethedatatocomparablemagnitudesItfollowsthatthederivativesareG =G∕120590gandE =E∕120590eandsoonecanrewritemodel(2)intermsofthescaledvariables
To fit model (4) to the scaled data we used the ode45 dif-ferentialequationsolver inMatlabreg toproducepredictedmodeltrajectoriesfrom1980to2016Wetreatedthe(scaled)initialcon-ditions g0ande0asparameterstobeestimatedGivenavectorofparameter estimates120579=
(g0e0rK120572sC120573
) we computed residuals
onthelogscaletoaccountforenvironmentalstochasticitywhich
(4)G = rGminus
r120590g
KG2minus120572120590eGE
E = sEminuss120590e
CE2+120573120590gGE
F I G U R E 4 emspHistogramsoftheequilibriaforbothspeciesbasedon2000bootstrappedparameterestimates
F I G U R E 3 emspObserveddataandmodelpredictionsObserveddata(symbols)andpredictionsofmodels(2)and(11)from1980to2080(curves)arenumbersofoccupiedbaldeagleterritoriesinWashingtonState(solidcircleslightsolidcurve)numbersofbaldeaglesobservedatProtectionIslandWashington(opencirclesdashedcurve)andnumbersofglaucous-wingedgullnestsattheVioletPointcolonyonProtectionIsland(trianglesdarksolidcurve)The95confidenceintervalsforfittedinitialconditionsandpredictedequilibriaaremarkedwithverticallinesontheleft-andright-handsidesofthegraphrespectively
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp7HENSON Et al
is approximately additive on the log scale (Cushing CostantinoDennis Desharnais amp Henson 2003 Dennis Munholland ampScott1991)
where gt(120579)andet(120579)arepredictedvaluesobtainedbynumericallyin-tegratingmodel(4)fromyear1980to2016usingparametersθtheparametersg0ande0asinitialconditionsandtheobservedstandarddeviationsσgandσeforgullsandeaglesrespectivelyWeobtainedbestfitparameters120579byminimizingthesumoftherootmeansquares(RMS)oftheresiduals
asafunctionofθwherengandnearethenumberofresidualsforgullsandeaglesrespectivelyusingthefminsearchdownhillsearchalgorithminMatlabreg
The fittingmethoddescribedabove isbasedonanumberofconsiderationsFirst thetwotimeseriesarenotpaired inmanyyears estimates are available for only one of the two speciesTherefore we cannot view the data for every year as a tradi-tional bivariate observationwhichwould allow a traditional sumofsquarederrorsandwealsocannotuseone-steppredictionsincomputingresidualsSecondeachspecieshasdifferentnumbersofobservationssothesumofsquaredresidualsmustbescaledbythenumberofobservationsOtherwisetheparameterestimateswouldbiasthespecieswiththemostobservationsThirdwecan-notestimateparametersusingseparateRMSvaluesbecausetheequationsarecoupledsothefitofonespeciesaffectsthefitoftheotherFourththeoverallmagnitudesofthetwospeciesdiffer
hencewescaledthedatabythestandarddeviationssothatthetwotermsintheRMSequationwouldbecommensurateandtheparameter estimateswould not be biased in favor of fitting thespecieswithoverallhighernumbers
WeperformeddiagnosticanalysesofthegullandeagleresidualstocheckforindependenceandnormalityWeplottedtheresidualsasafunctionoftimeandexaminednormalquantilendashquantileplotsfordeparturesfromnormalityWecomputedfirst-andsecond-orderautocorrelationsofthegullandeagleresidualsthatwereseparatedbyoneandtwoyearsrespectivelyandtestedthesecorrelationsforsignificanceWealsocomputed theShapirondashWilk test statistic fornormality(ShapiroampWilk1965)
36emsp|emspGoodness‐of‐Fit
WeusedageneralizedR2tocheckthegoodnessoffitofthescaledmodel(4)tothescaleddata
HereRMSM is the fitted rootmean square usingmodel (4) as thepredictorandusingEquation(5)tocomputetheresidualswhereasRMSTisthesumoftherootmeansquaresusingthecentraltendency(mean)ofthedataasthepredictorandusingthefollowingequationtocomputetheresidualsinEquation(6)forRMST
Wealsocomputedtheadjustedgoodness-of-fitRA2by
where p=8isthenumberofestimatedmodelparametersIngen-eralRA
2issmallerthanR2becauseittakesintoaccountthenum-berofestimatedparametersandpenalizesthegoodnessoffitasp increasesAversionofEquation(9)isusedinmultipleregressionmodelsbutinthatcaseoneusesminus1insteadofminus2(Zar2009)Herewehavetwomeans(forgullsandeagles)insteadofonemeansowe reduce thedegreesof freedombyonemoreunit Equations(7)and (9)representaldquogeneralizedrdquocoefficientofdetermination(Anderson-Sprecher1994)notthetraditionalvalueusedinlinearregression
37emsp|emspConfidence intervals for parameters
Onceadeterministicmodelhasbeenfittedtopopulationtimeseriesdatabootstrappingmethodscanbeusedtoobtainconfidence in-tervalsfortheestimatedparameters(DennisDesharnaisCushingHensonampCostantino 2001 Falck Bjornstadamp Stenseth 1995)We randomly sampledwith replacement from themodel residu-als12⋯ ngand12⋯ ne tocreatesetsofsurrogate residuals
(5)120574t= ln
(Gt
)minus ln
(gt(120579)
)
120576t= ln(Et
)minus ln
(et(120579)
)
(6)RMS()=
ngsumt=1
t2
ng+
nesumt=1
t2
ne
(7)R2=1minusRMSM
RMST
(8)120574t= ln
(Gt
)minusmean
[ln(Gt
)]
120576t= ln(Et
)minusmean
[ln(Et
)]
(9)RA2=1minus
ng+neminus2
ng+neminuspminus2
(1minusR2
)
F I G U R E 5 emspScatterplotofthe2000estimatesofr versus α withthecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedlineEstimatesbelowthatlineleadtogullcolonyextinctionThedottedlinesarer = αCusingthelowerandupper95CIboundsforparameterCTheareabetweenthedottedlinescouldbeconsideredanldquouncertaintyparameterregionrdquoforcoexistence
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
8emsp |emsp emspensp HENSON Et al
lowast1lowast2⋯ lowast
ngandlowast
1lowast2⋯ lowast
neThetimeorderoftheresidualswas ig-
noredwhensampling(Dennisetal2001Falcketal1995)Thesurrogateresidualswereusedtocreatesurrogatedata
For each surrogate data set we estimated point parametersusing the method explained in section 36 This process was re-peatednS=2000timesusinganindependentrandomsamplingoftheoriginalresidualsforeachiterationIfthefminsearchalgorithmdidnotconvergetoasolutionwithin1000functionalevaluationsthesestepswererepeatedforanewsetofsurrogatedataThisoc-curredatarateof216The lackofconvergence insomeofthebootstraprealizationswasduetothefact thatthetimeseriesarerelativelyshortandconsequently theoverallnumberof residualsissmallfrequentlyleadingtosetsofresampledresidualsthatnega-tivelyimpacttherateofconvergencefortheminimizationalgorithmWe independently repeated the analyses several times with onlytrivialvariationsintheresultstoverifythat2000repetitionswereadequateand that thenonconvergentbootstrap realizationswerenotaproblem
This procedure yielded a set of bootstrapped parameter esti-mateslowast
1lowast2⋯ lowast
ns that should reflect the variation onewould see
in thebest fitparametersassumingthemodel (4) isvalidandtheobservedresidualsfromthemodelarerandomeffectswithnoauto-correlationorcross-correlation
The95confidenceintervalsforthepointparameterestimateswereobtainedbyrankingtheparameterestimatesforthesurrogatedatasetsandcomputingthe25thand975thpercentiles(Dennisetal2001)
4emsp |emspRESULTS
Numbers of eagles observed on Protection Island were stronglypositively correlated with numbers of occupied eagle territoriesinWashington (ρ=086p=0006n=8)Poisson regressionpro-ducedtherelationship
(FigureA1)withsignificantslopecoefficient (p=00057)butnon-significantintercept(p=042)Theestimateddispersionparameterwas123indicatingasmallamountofoverdispersion
For the fittedpoint estimatesof theparameters (Table2) therelationshipr gt αCholdsindicatingthatthecoexistenceequilibriumis stableParameterβ is effectively equal to zeroThus theeaglepopulation is predicted to grow logistically without dependenceonthegullpopulationThemodelpredictsthatgullnestsonVioletPointwill equilibrate at 1072 in contrast to the estimated carry-ingcapacityofK=7395nestingpairs(Table2)EagleterritoriesinWashington are predicted to equilibrate at 823 territories which
is equal to thepredicted carrying capacityC (Table2) The good-ness-of-fits indicated that themodel explains at least 77 of thevariabilityinthedata(R2=0819andRA
2=0772)Atthepredictedequilibriumof823eagleterritoriesEquation(11)predictsanequi-libriumof35eaglevisitorsonProtectionIslandFittedmodelpredic-tionsfortheyears1980ndash2080areshowninFigure3
Ouranalysisofthemodelresidualsforgullsandeagles(Equation5) reveals no evidence of significant violations of our model as-sumptions The first- and second-order autocorrelation values forgulls were g
(1)=04580 (n=8 p=02538) and g
(2)=minus02975
(n=15 p=02815) The autocorrelation values for eagles weree
(1)=01577 (n=18 p=05319) and e
(2)=minus02771 (n=17
p=02817) Neither of the ShapirondashWilk test statistics for gullsandeaglesweresignificantWg=09875 (p=09134) forgullsandWe=09863 (p=09862) for eaglesHowever thepowerof thesetests is limited due to small sample sizes Time series and normalquantilendashquantileplotsofthemodelresidualsappearinFigureA2
A scatterplotmatrix of the bootstrapped parameter estimatesexcludingβwhichwasalwaysclosetozero isshowninFigureA3The diagonal plots are histograms showing the distribution of the2000estimatesforeachparameterNoneofthesehistogramssug-gestunusualpropertiesforthedistributionssuchashighskewnessormultiplemodesTheoff-diagonalscatterplotsshowthepairwiserelationshipsbetween theparameters for the2000estimatedpa-rametervectorsTheseplotscanrevealstrongorunusualdependen-ciesbetweenparameterestimatesasisthecaseforparametersr and αThissuggeststhatlargeestimatesofgullpopulationgrowthratescoincidewithlargeestimatesofgullpredationratesandviceversa
In134ofcasesthevectorofparameterestimatespredictedgullcolonyextinctionPredictedequilibriawerederivedforeachofthe 2000 bootstrapped parameter vectors and plotted for bothspecies(Figure4)Thescatterplotofthe2000estimatesshowsr versus αwiththecoexistencecutoffconditionr = αCforthepointestimateofCappearingasadashedline(Figure5)Estimatesbelowthat line leadtogullcolonyextinctionThedotted linesare r = αC usingthelowerandupper95CIboundsforparameterCTheareabetweenthedotted linescouldbeconsideredanldquouncertaintypa-rameterregionrdquoforcoexistence
Althoughourdeterministicmodelcannotpredicta time toex-tinctionwecancomputetheamountoftimeittakesgullnumberstofallbelowathresholdinthosecases(267of2000)forwhichthebootstrappedparametervectorspredictextinctionIfwedefinethethresholdas10of theestimatedcarryingcapacity forgulls theestimatedmeanfortheyearinwhichextinctionoccursis2039witha95confidenceintervalof(20222059)Forathresholdof5ofKthemeanis2073witha95confidenceintervalof(20402122)
5emsp |emspDISCUSSION
Wehavedemonstratedastrongdynamicrelationshipbetweenthebald eagle population inWashington State and numbers of glau-cous-winged gull nests on Protection Islands Violet Point colony
(10)Glowastt= gt
(120579)exp
(120574lowastt
)
Elowastt= et
(120579)exp
(120576lowastt
)
(11)ln(PI Eagles
)=05074+0003701
(WAEagle Territories
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp9HENSON Et al
This relationship exhibits a LotkandashVolterra-type dynamic that atthepointestimatesof theparameterspredicts long-termcoexist-enceandequilibriumforthetwospeciesThemodeldoesnotpre-dictpredatorndashpreyoscillationsasdepictedoriginallybyLotka(19251932) and Volterra (1926) It is notable however that the modelpredictsgullcolonyextinctionforsomeparameterswithinthe95confidenceintervalsaboutthepointestimates
Thecarryingcapacityestimate forWashingtoneagleoccupiedterritories(823)iscurrentlyapproximatelyrealizedandperhapshasbeenexceededTherearenowmorethan1000nestingterritoriesinWashingtonStatealthoughthenestsarenotallactiveduringthesame years Themost recent comprehensive survey results showthat in2001therewere923territoriescheckedand705foundtobeoccupiedandin2005thenumbersincreasedto1158territoriescheckedand893occupied(JWWatsonunpublisheddata)
EagleshavenestedonProtectionIslandsinceatleastthe1920s(CowlesampHayward2008)andoneortwoeagletswereraisedfromanestlocatedontheislandduringmanyyearssincetheearly1980s(Hayward et al 2010) Large numbers of transient eagles are at-tractedtothe islandeachbreedingseasonForexampleon4July200453eagleswerecountedduringaboattriparoundtheisland(Neil Holcomb US Fish andWildlife Service volunteer personalcommunication)ThenumberofeaglespresentonProtectionIslandtypicallypeakseachyearduringthesecondweekofJulywhengullchicksarehatchingandsealafterbirthsanddeadpupsaremostabun-dant(Haywardetal2010)Transientadultssometimesarechasedbacktothemainlandbyadultresidents(unpublishedobservations)
The impactofbaldeagleson seabirdshasbecome increasinglyapparent as populations have recovered and some marine fishpopulations on which they feed have declined (Anderson BowerNysewanderEvensonampLovvorn2009AndersonLovvornEslerBoyd amp Stick 2009 Stick amp Lindquist 2009 Therriault Hay ampSchweigert2009)AlongthewestcoastofNorthAmericabaldea-gleshavebeen implicatedasbeingresponsiblefordeclines in localpopulations of common murres (Uria aalge Parrish et al 2001Hipfner Morrison amp Darvill 2011) double-crested cormorants(Phalacrocorax auritusChatwinMatherampGiesbrecht2002HarrisWilson amp Elliott 2005) pelagic cormorants (P pelagicus Chatwinetal2002Harrisetal2005CarterHebertampClarkson2009)greatblueherons(Ardea herodiasVenneslandampButler2004)west-erngrebes(Aechmophorus occidentalisBower2009)andglaucous-wingedgulls(Haywardetal2010Sullivanetal2002)Thedeclineshavebeendramatic insomeplacesForexamplea131-kmstretchalong thecoastofOregon formerly supportedmore than380000breeding pairs of commonmurres but successful reproduction bythesebirdstodayisvirtuallynonexistentEntirecolonieshavebeenabandonedMurresthatremainincoloniesharassedbybaldeaglestypicallygiveuponthebreedingprocessbeforecompletingthenest-ingseason(Hipfneretal2012)SimilareffectsonseabirdshavebeennotedinNorthernEuropewherepopulationsofwhite-tailedeagles(H albicilla)havereboundedfromdeclines(Hipfneretal2012)
Thedeclineinnumbersofglaucous-wingedgullsonVioletPointProtection Island paralleled declines and eventual extirpation of
double-crestedandpelagiccormorantsnestingonProtectionIslandTwo colonies containing several hundred pairs of double-crestedcormorantsthrivedonProtectionIslandformanyyearsandasmallpelagiccormorantcolonyexistedthereforseveralyearsbuteagledisturbancesfrequentlycausedcolonyresidentstofleetheirnestsby2007allthreecolonieswerevacantandhaveremainedso(JLHaywardunpublisheddata)Rhinocerosauklets(Cerorhinca monoc‐erata) remain abundant breeders on Protection Island (PearsonHodum Good Schrimpf amp Knapp 2013) although in 2001 theycomprisedthemostcommonremainsbeneathanactivebaldeaglenestontheisland(Haywardetal2010)Ourinformalobservationssuggestthataukletsarepreyeduponmostlyduringpredawnhourswhenaukletsleavetheirnestburrowstoforage
Althoughthemodelpredictscoexistenceatthepointparameterestimatesthe95confidenceintervalsincludethepossibilityofex-tinctionOfthe2000bootstrappedparametervectorsextinctionwaspredictedin134ofthecasesWhenwelimitourpredictiontothe1788cases inwhichtheelementsofthebootstrappedpa-rametertriplets(rαC)areinsidetheir95confidenceintervalsthenin 110 of the cases gull colony extinctionwas predicted Thusforsomeparametervalueswithinthe95confidenceintervalsourmodelpredictsthattheVioletPointgullcolonyonProtectionIslandwilldisappear Ifwedefine the threshold forextinctionas10oftheestimatedcarryingcapacityforgullstheestimatedmeanfortheyear inwhichextinctionoccurs is2039witha95confidence in-tervalof(20222059)Forathresholdof5themeanis2073witha 95 confidence interval of (2040 2122) In fact extinction didoccuronColville Island located33kmnorthofProtection IslandTheColvilleglaucous-wingedgullcolonygrewfrom1273pairs in1963to1808pairs in1975 (AmlanerHaywardSchwabampStout1977ThoresenampGalusha1971)By2000howeveronly~20pairsnestedonColvilleandmorerecentobservationssuggestthatnest-inggullsareabsentfromtheisland(JLHaywardunpublisheddata)Baldeagleswereknowntodisturbandpreyonthesegullsduringthe1970s(Haywardetal1977)althoughitisunknownwhetherthiswasthecauseofcolonyabandonment
Extinction of the Protection Island gull colony would impactthelocalecosysteminavarietyofwaysTheeffectsonvegetationwouldbepronouncedGullsphysicallyaltervegetationintheircol-oniesthroughtramplingdiggingofnestscrapescollectionofnestmaterialanddisturbanceduringboundarydisputestheychemicallyalter the soil through defecation and regurgitation of nondigest-ible componentsof food (Ellis FarintildeaampWitman2006 LindborgLedbetterWalatampMoffett2012SobeyampKenworthy1979)andthedecompositionofadultandjuvenilegullcarcassesonbreedingcoloniescontributesnutrientstothesoil(EmslieampMessenger1991LordampBurger1984)Thusextinctionofthegullcolonywouldre-sult in significant changes in thevegetationand inorganisms thatdependonthatvegetation (SobeyampKenworthy1979)and in theloss of a nutrient subsidy to the waters surrounding ProtectionIsland(Hutchinson1950Leentvaar1967McCollampBurger1976)Extinction alsowould eliminate a significant local food source forbaldeaglesalthoughgullsarenottheironly islandfood(Hayward
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
10emsp |emsp emspensp HENSON Et al
etal2010)andbaldeaglesmaygraduallyrelocateinresponsetodwindlinghistoricsourcesofprey(McClellandetal1994)
FactorsotherthanthedirectandindirecteffectsofeaglesalsomayimpactgullpopulationsGullsarescavengersandgullpopulationsin-creaseddramaticallyduringmostof the twentiethcentury (Amlaneret al 1977Duhem Roche Vidal amp Tatoni 2008 KadlecampDrury1968Sullivanetal2002)Closureoflandfillsinthisandotherregionsworldwidehasbeenassociatedwithsharplyreducedgullpopulations(Payo-Payoet al 2015) Indeed the1992closureof theCoupevilleLandfill (Anonymous 2001) a popular feeding site for gulls located19kmnortheastoftheVioletPointgullcolony(Schmidt1986)wasfol-lowedbya10-yeardeclineingullnestcountsonVioletPoint(Figure3)Declinesinforagefishpopulations(Blightetal2015McKechnieetal 2014 Therriault et al 2009)may have played a role in gull de-clinesGullsnestonlyalong theedgesofdunegrass (Leymus mollis)soincreasesincoverbythisplantcouldimpactthesizeofthecolonyDunegrasscoverincreasedfrom25ha(14ofVioletPoint)in1980to66ha(39ofVioletPoint)by2009(Cowlesetal2012)ConsiderableareasuitablefornestinghoweverremainsunoccupiedsuggestingthatdunegrassisnotalimitingfactorIncreasingseasurfacetemperatures(SSTs) thatoccurwithElNintildeoeventsandclimatechangehavebeenimplicatedasafactorthatincreasesgulleggcannibalismanddecreasesgull colony reproductive output (Hayward et al 2014)We do notknowwhethertheeffectsofincreasingSSTsinteractinsomewaywitheagleeffectsonthegullpopulationAlthoughthesevariousconfound-ingfactorswhicharenotincludedexplicitlyinourmodelundoubtedlycontributedtothedeclineingullnumbersitisimportanttonotethatthegulldynamicsneverthelessarewellpredictedbythemodelThissuggeststhateagledynamicsareoneofthemostexplanatoryfactorsinvolvedinthedeclineofgullsonProtectionIsland
Thedatausedhereraisedchallengesformodelparameteresti-mationWhilemanysophisticatedtechniqueshavebeendevelopedto dealwith deficiencies in ecological time series data (eg ClarkampBjoslashrnstad2004Clark2007)ourgoalwas toobtaina reason-ablefitofthemodeltothedataandfocusontheimplicationsofthemodel predictions forwildlifemanagementWe scaledpopulationnumbersbytheirstandarddeviationsandusedthesumoftherootmeansquaresof themodel residuals (Equation6)as theobjectivefunctionforordinaryleastsquares(OLS)minimizationSomeoftheestimation issuescanbemitigated ifoneassumes thatoneof theequationsisdecoupledfromtheotherasisthecasewhenβ=0InAppendixBwepresentasecondmethodbasedonthisassumptionwhereweuseOLSparameterestimationontheunscaledpopulationdataseparatelyforeachspeciesTheresultingparameterestimates(showninTableA1)arenearlyidenticaltothoseinTable2
Anotherissuewiththeparameterestimationandbootstrappingmethods isa lackof independenceofthemodelresidualsThisoc-curs becausewe are directly fitting themodel to time series datausingOLSAnalternateapproachtoparameterestimationistotakeadvantage of transitions between consecutive model states usingconditional leastsquares (CLS)For thismethodoneusesparame-tervaluesandtheobservedpopulationnumbersatagiventimetopredictthepopulationvaluesinthefollowingtimeinterval(seeeg
DennisDesharnaisCushingampCostantino1995)OnerepeatsthisprocedureforalltimestepsThebestsetofparameterestimatesareonesthatminimizethesumofthesquareddeviationsbetweentheobservednumbersandtheone-steppredictionsThisapproachtakesadvantageoftheMarkovassumptionimplicitintheordinarydiffer-ential equation model Future states depend only on the presentnotthepastSincethedatausedforparameterestimationarecon-ditionalone-steptransitionstheldquoobservationsrdquoarebyassumptionindependent If thepopulationdataarenot spacedevenly in timehowever thenonecannotassume that the randomone-stepdevi-ationsare identicallydistributedsincethevariancewill ingeneraldependon the lengthof the time stepAlso if onedoesnothaveobservationsforallthestatespacevariablesatthesametimesthenone-steppredictionsarenotpossibleGiventhatbothsituationsexistforthegullandeagledatawewereunabletousetheCLSmethodMore complex methods such as Bayesian state space modelingandGibbssamplingmightmitigatethesedatadeficiencies(ClarkampBjoslashrnstad2004)NeverthelessourOLSandbootstrappingproce-duresprovidedparameterestimateswithagoodvisualfittothedataandmodelresidualsthatshowednoevidenceofautocorrelationordeviationsfromnormalityThetechniquesweusedarenotspecifictothepredatorndashpreysystemweanalyzedandcouldproveusefulinothersituationswheretheecologicaldataprovidesimilarchallenges
Our parameter estimation and model predictions for gulls onProtectionIslandarebasedonstatewideeagledataThisisbecausethese data are more frequent and consistent over time than theeagleobservationsforProtectionIslandHoweverthePoissonre-gressioncanbeusedtopredicteaglenumbersontheislandbasedonthestatewidedataWerepeatedourparameterestimationpro-cedureusingthepredictedislandeaglenumbersfromthenonlinearEquation (4) The estimated parameter values appear in the TableA1TheoverallfitwasslightlypoorerwithgeneralizedcoefficientsofdeterminationofR2=0789andRA
2=0735Agraphicalcompar-isonof themodel fits for the regression-predictedeaglenumbersversusstatewidedata (FigureA4)suggeststhattheformerunder-estimates observed gull numbers for the time period 1984ndash1997Agraphicalanalysisoftheresidualssupportsthisobservationandsuggests some consistent departures from normality (Figure A5)Moreovertheanalysisfortheregression-predictedeaglenumbersdoesnottakeintoaccounttheerrorassociatedwiththeregressionpredictions which based on Figure A1 could be substantial Forthese reasons we feel that the parameter estimation and modelanalysesbasedonthestatewideeagledataaremorereliable
6emsp |emspCONCLUSIONS
Wehaveshownthatthedynamicsofaglaucous-wingedgullcolonyonProtectionIslandfrom1980ndash2016canbeexplainedbythenum-berofoccupiedbaldeagleterritories inWashingtonwithgeneral-izedR2=082ThissupportsthehypothesisthattheriseanddeclineingullnumbersobservedonProtectionIslandareduelargelytothedecline and recovery of the bald eagle populationWe also have
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
AmlanerCJHaywardJLSchwabERampStoutJF(1977)Increasesin a population of nesting glaucous-winged gulls disturbed by hu-mansThe Murrelet5818ndash20httpsdoiorg1023073535708
Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp11HENSON Et al
shown that with 95 confidence the long-term dynamic predic-tionsincludecoexistencebutalsothepossibilitythatthegullcolonywilldisappearasoccurredonColvilleIsland
Thisstudyservesasareminderthatthenecessaryandsuccess-fulmanagementofonespeciescanhavedirectanddramaticeffectsonotherspeciesanditillustratestheuncertaintyofthoseeffectsItservesasacautionaryexplorationofthefuturenotonlyforgullsonProtectionIslandbutforotherseabirdsintheSalishSeaInpartic-ularmanagersshouldmonitorthenumbersofnestsinseabirdcol-oniesaswellastheeagleactivitywithinthecoloniestodocumenttrendsthatmayleadtocolonyextinction
ACKNOWLEDG MENTS
WethankJenniferBrown-ScottLorenzSollmannandSueThomasWashingtonMaritimeNationalWildlifeRefugeComplexforpermis-sion toworkonProtection IslandNationalWildlifeRefugeDerekStinson and Scott Pearson Washington Department of Fish andWildlifefordiscussionsRosarioBeachMarineLaboratoryforlogis-ticalsupportandJonathanCowlesfornumericalexplorationsRADthanksRichardMMurrayattheCaliforniaInstituteofTechnologyforhishospitalitywhileportionsofthisworkwerecompletedthereThisresearchwassupportedbyUSNationalScienceFoundationgrantsDMS-1407040(SMHandJLH)andDMS-1225529(RAD)
CONFLIC T OF INTERE S T
Nonedeclared
AUTHORSrsquo CONTRIBUTIONS
SMHandETFposedthemathematicalmodelRADandSMHconductedstatisticalmodelfittingandtimeseriesanalysisJWWprovidedeagledataJGGandJLHprovidedgulldataAllauthorscontributedtothewritingofthemanuscriptAllauthorsgavefinalapprovalforpublication
DATA ACCE SSIBILIT Y
ThedataareavailableinTable1ofthismanuscript
ORCID
Shandelle M Henson httpsorcidorg0000-0001-8439-7532
R E FE R E N C E S
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Anderson E M Bower J L Nysewander D R Evenson J R ampLovvorn J R (2009) Changes in avifaunal abundance in a heav-ilyusedwinteringandmigration site inPugetSoundWashingtonduring1966ndash2007Marine Ornithology3719ndash27
Anderson E M Lovvorn J R Esler D BoydW S amp Stick K C(2009)UsingpredatordistributionsdietandconditiontoevaluateseasonalforagingsitesSeaducksandherringspawnMarine Ecology Progress Series386287ndash302httpsdoiorg103354meps08048
Anderson-SprecherR(1994)ModelcomparisonsandR2 The American Statistician48113ndash117
Anonymous (2001) Trash talk waste division heads it upmoves it out Whidbey News‐Times 6 June Accessed onlineon 2 July 2018 httpwwwwhidbeynewstimescomnewstrash-talk-waste-division-heads-it-up-moves-it-out
AtkinsNampHenemanB(1987)ThedangersofgillnettingtoseabirdsAmerican Birds411395ndash1403
BellDA (1996)Geneticdifferentiationgeographicvariationandhy-bridization in gulls of the Larus glaucescens‐occidentalis complexCondor98527ndash546httpsdoiorg1023071369566
BellDA (1997)Hybridizationandreproductiveperformance ingullsof theLarus glaucescens‐occidentaliscomplexCondor99585ndash594httpsdoiorg1023071370471
BlightLKDreverMCampArceseP (2015)Acenturyofchangeinglaucous-winged gull (Larus glaucescens) populations in a dynamiccoastalenvironmentCondor117108ndash120
BolkerBMGardnerBMaunderMBergCWBrooksMComitaL hellip Zipkin E (2013) Strategies for fitting nonlinear ecologicalmodels inRADModelBuilderandBUGSMethods in Ecology and Evolution4501ndash512httpsdoiorg1011112041-210X12044
BowerJL(2009)ChangesinmarinebirdabundanceintheSalishSea1975to2007Marine Ornithology379ndash17
BuehlerDA(2000)Baldeagle(Haliaeetus leucocephalus)InAFPooleampFBGill(Eds)The Birds of North America No 506 A P a F Gill PhiladelphiaPATheBirdsofNorthAmericaInc
CarpenterSRCottinghamKLampStowCA(1994)Fittingpreda-tor-preymodelstotimeserieswithobservationerrorsEcology751254ndash1264
CarterHRHebertPNampClarksonPV(2009)DeclineofpelagiccormorantsinBarkleySoundBritish Columbia Wildlife Afield43ndash32
ChatwinTAMatherMHampGiesbrechtTD(2002)Changesinpe-lagicanddouble-crestedcormorantnestingpopulationsintheStraitof Georgia British Columbia Northwestern Naturalist 83 109ndash117httpsdoiorg1023073536609
ClarkJS(2007)Models for ecological data An introductionPrincetonNJPrincetonUniversityPress
Clark J SampBjoslashrnstadON (2004)Population time seriesProcessvariability observation errors missing values lags and hiddenstatesEcology853140ndash3150httpsdoiorg10189003-0520
CowlesD L Galusha J G ampHayward J L (2012)Negative inter-speciesinteractionsinaglaucous-wingedgullcolonyonProtectionIslandWashingtonNorthwestern Naturalist9389ndash100httpsdoiorg101898nwn11-121
Cowles D L amp Hayward J L (2008) Historical changes in thephysical and vegetational characteristics of Protection IslandWashington Northwest Science 82 174ndash184 httpsdoiorg1039550029-344X-823174
CushingJMCostantinoRFDennisBDesharnaisRAampHensonSM(2003)Chaos in ecology Experimental nonlinear dynamicsSanDiegoCAAcademicPress
de Valpine P amp Hastings A (2002) Fitting popula-tion models incorporating process noise and observa-tion error Ecological Monographs 72 57ndash76 httpsdoiorg1018900012-9615(2002)072[0057FPMIPN]20CO2
DeGangeARampNelsonJW(1982)BaldeaglepredationonnocturnalseabirdsJournal of Field Ornithology53407ndash409
DennisBDesharnaisRACushingJMampCostantinoRF(1995)NonlineardemographicdynamicsMathematicalmodels statisticalmethods and biological experiments Ecological Monographs 65261ndash282httpsdoiorg1023072937060
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
12emsp |emsp emspensp HENSON Et al
DennisBDesharnaisRACushingJMHensonSMampCostantinoR F (2001) Estimating chaos and complex dynamics in an in-sect population Ecological Monographs 71 277ndash303 httpsdoiorg1018900012-9615(2001)071[0277ECACDI]20CO2
DennisBMunhollandPLampScottJM(1991)Estimationofgrowthand extinction parameters for endangered species Ecological Monographs61115ndash143httpsdoiorg1023071943004
DennisBPoncianoJMLeleSRTaperMLampStaplesDF(2006)Estimating density dependence process noise and observationerror Ecological Monographs76323ndash341httpsdoiorg1018900012-9615(2006)76[323EDDPNA]20CO2
Duhem C Roche P K Vidal E amp Tatoni T (2008) Effects of an-thropogenic food resources on yellow-legged gull colony size onMediterranean islandsPopulation Ecology50 91ndash100 httpsdoiorg101007s10144-007-0059-z
ElliottKHElliottJEWilsonLKJonesIampStenersonK(2011)Density-dependenceinthesurvivalandreproductionofbaldeaglesLinkages to chum salmon The Journal of Wildlife Management 751688ndash1699httpsdoiorg101002jwmg233
Ellis J C Farintildea J M amp Witman J D (2006) Nutrient transferfrom sea to land The case of gulls and cormorants in the Gulfof Maine Journal of Animal Ecology 75 565ndash574 httpsdoiorg101111j1365-2656200601077x
EltonCampNicholsonM(1942)Theten-yearcycleinnumbersofthelynx inCanadaJournal of Animal Ecology11215ndash244httpsdoiorg1023071358
Emslie SDampMessenger S L (1991)Pellet andboneaccumulationatacolonyofwesterngulls(Larus occidentalis) Journal of Vertebrate Paleontology11133ndash136
FalckWBjornstadONampStensethNC(1995)BootstrapestimateduncertaintyofthedominantLyapunovexponentforHolarcticmicro-tinerodentsProceedings of the Royal Society of London B261159ndash165
GalushaJGampHaywardJL(2002)Baldeagleactivityatagullcolonyand seal rookery on Protection Island Washington Northwestern Naturalist8323ndash25httpsdoiorg1023073536511
GalushaJGVorvickBOppMRampVorvickPT (1987)NestingseasoncensusesofseabirdsonProtectionIslandWashingtonThe Murrelet68103ndash107httpsdoiorg1023073534115
HarrisMLWilsonLKampElliottJE(2005)AnassessmentofPCBsandOCpesticidesineggsofdouble-crested(Phalacrocorax auritus) andpelagic(P pelagicus)cormorantsfromthewestcoastofCanada1970 to 2002 Ecotoxicology14607ndash625
HarveyCJGoodTPampPearsonSF(2012)Topndashdowninfluenceofresidentandoverwinteringbaldeagles(Haliaeetus leucocephalus) inamodelmarineecosystemCanadian Journal of Zoology 90903ndash914
Hayward J L (2009) Bald eagle predation on harbor sealpups Northwestern Naturalist 90 51ndash53 httpsdoiorg1018981051-1733-90151
HaywardJLGalushaJGampHensonSM(2010)Foraging-relatedactiv-ityofbaldeaglesataWashingtonseabirdcolonyandsealrookeryJournal of Raptor Research4419ndash29httpsdoiorg103356JRR-08-1071
HaywardJLGillettWHAmlanerCJampStoutJF(1977)PredationongullsbybaldeaglesinWashingtonThe Auk94375
Hayward J LWeldon LMHenson SMMegna LC PayneBG ampMoncrieff A E (2014) Egg cannibalism in a gull colony in-creaseswithseasurface temperatureCondor11662ndash73httpsdoiorg101650CONDOR-13-016-R11
HensonSM (2012)Phaseplaneanalysis InAHastingsampLGross(Eds)Encyclopedia of theoretical ecology(p538ndash545)BerkeleyCAUniversityofCaliforniaPress
HensonSMWeldonLMHaywardJLGreeneDJMegnaLCampSeremMC(2012)CopingbehaviourasanadaptationtostressPost-disturbance preening in colonial seabirds Journal of Biological Dynamics617ndash37httpsdoiorg101080175137582011605913
HipfnerJMBlightLKLoweRWWilhelmSIRobertsonGJBarrettRThellipGoodTP(2012)UnintendedconsequencesHowtherecoveryofseaeagleHaliaeetusspppopulationsinthenorthernhemisphereisaffectingseabirdsMarine Ornithology4039ndash52
Hipfner JMMorrisonKWampDarvillR (2011)PeregrineFalconsenabletwospeciesofcolonialseabirdstobreedsuccessfullybyex-cluding other aerial predatorsWaterbirds 34 82ndash88 httpsdoiorg1016750630340110
HutchinsonGE(1950)Surveyofcontemporaryknowledgeofbiogeo-chemistry3ThebiogeochemistryofvertebrateexcretionBulletin of the American Museum of Natural History9634
KadlecJampDruryWH(1968)StructureoftheNewEnglandherringgullpopulationEcology49645ndash676httpsdoiorg1023071935530
Leentvaar P (1967) Observations on guanotrophic environmentsHydrobiologia29441ndash489
LindborgVALedbetterJFWalatJMampMoffettC(2012)Plasticconsumption anddietof glaucous-wingedgulls (Larus glaucescens) Marine Pollution Bulletin64 2351ndash2356 httpsdoiorg101016jmarpolbul201208020
LordWDampBurgerJF(1984)Arthropodsassociatedwithherringgull(Larus argentatus)andgreatblack-backedgull(Larus marinus)carriononislandsintheGulfofMaineEnvironmental Entomology131261ndash1268
LotkaAJ(1925)Elements of physical biologyBaltimoreMDWilliamsandWilkins
LotkaAJ(1932)ThegrowthofmixedpopulationsTwospeciescom-petingforacommonfoodsupplyJournal of the Washington Academy of Science22461ndash469
McClellandBRYoungLSMcClellandPTCrenshawJGAllenH L amp SheaD S (1994)Migration ecology of bald eagles fromautumn concentrations inGlacierNational ParkMontanaWildlife Monograph1251ndash61
McCollJGampBurgerJ(1976)ChemicalinputsbyacolonyofFranklinrsquosgulls nesting in cattailsAmerican Midland Naturalist96 270ndash280httpsdoiorg1023072424068
McKechnie I Lepofsky D Moss M L Butler V L Orchard T JCouplandGhellipLertzmanK(2014)Archaeologicaldataprovideal-ternativehypothesesonPacificherring(Clupea pallasii)distributionabundance and variability Proceedings of the National Academy of Sciences of the United States of America111E807ndashE816
MegnaLCMoncrieffAEHaywardJLampHensonSM (2014)EqualreproductivesuccessofphenotypesintheLarus glaucescens‐occidentaliscomplexJournal of Avian Biology45410ndash416
Middleton H A Butler R W amp Davidson P (2018) Waterbirdsalter theirdistributionandbehavior in thepresenceofbaldeagles(Haliaeetus leucocephalus) Northwestern Naturalist9921ndash30
Millar J G amp Lynch D (2006) USDI Endangered and ThreatenedwildlifeandplantsRemovingthebaldeagleinthelower48statesfromthelistofendangeredandthreatenedwildlifeUSDIFishandWildlifeServiceFederal Register71(32)8238ndash8251
MoncrieffAEMegnaLCHaywardJLampHensonSM (2013)Mating patterns and breeding success in gulls of the Larus glau‐cescens‐occidentalist complexProtection IslandWashingtonUSANorthwestern Naturalist9467ndash75
Moul IEampGebauerMB (2002)Statusofthedouble-crestedcormo-rant inBritishColumbiaBCMinistWaterLandandAirProtectionBiodiversityBranchVictoriaBCWildlWorkingRepNoWR-10536p
Parrish J K Marvier M amp Paine R T (2001) Direct and indi-rect effects Interactions between bald eagles and commonmurres Ecological Applications 11 1858ndash1869 httpsdoiorg1018901051-0761(2001)011[1858DAIEIB]20CO2
Payo-PayoAOroD Igual JM Jover L Sanpera Camp TavecciaG (2015)Populationcontrolofanoverabundantspeciesachievedthrough consecutive anthropogenic perturbations Ecological Applications252228ndash2239httpsdoiorg10189014-20901
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp13HENSON Et al
Pearson S FHodumP JGoodTP SchrimpfMampKnappSM(2013)Amodelapproachforestimatingcolonysizetrendsandbab-itatassociationsofburrow-nestingseabirdsCondor115356ndash365
PowerEA (1976)Protection Island and the Power familyUnpublishedmanuscriptJeffersonCountyWAHistoricalSocietyArchives
Richardson F (1961) Breeding biology of the rhinoceros auklet onProtection Island Washington Condor 63 456ndash473 httpsdoiorg1023071365278
Ricklefs R E (1990) Ecology 3rd ed (p 497) New York NYW HFreemanandCompany
SchmidtDF (1986)Thenumbersdistributionandbehaviorofglau-cous-wingedgulls(Larus glaucescens)atasanitarylandfillMSthe-sisWallaWallaCollege42p
ShapiroSSampWilkMB(1965)Ananalysisofvariancetestfornor-mality (complete samples) Biometrika 52 591ndash611 httpsdoiorg101093biomet523-4591
SobeyDGampKenworthyJB(1979)TherelationshipbetweenherringgullsandthevegetationoftheirbreedingcoloniesJournal of Ecology67469ndash496httpsdoiorg1023072259108
StalmasterMV(1987)The bald eagleNewYorkNYUniverseBooksStickKCampLindquistA(2009)2008 Washington State Herring Stock
Status Report OlympiaWAWashington Department of Fish andWildlifeFishProgramFishManagementDivision
Stinson DWWatson JW ampMcAllister K R (2001)Washington state status report for the bald eagle(p92)FishandWildlifeOlympiaWashingtonDepartment
SullivanTMHazlittSLampLemonMJF(2002)Populationtrendsofnestingglaucous-wingedgullsLarus glaucescensinthesouthernStraitofGeorgiaBritishColumbiaThe Canadian Field‐Naturalist116603ndash606
TherriaultTWHayDEampSchweigertJF(2009)Biologicalover-viewand trends inpelagic forage fishabundance in theSalishSea(StraitofGeorgiaBritishColumbia)Marine Ornithology373ndash8
Thoresen A C amp Galusha J G (1971) A nesting population studyof some islands in thePuget Sound areaThe Murrelet52 20ndash23httpsdoiorg1023073534522
Vennesland R G amp Butler R W (2004) Factors influencinggreat blue heron nesting productivity on the Pacific Coast ofCanada from 1998 to 1999Waterbirds 27 289ndash296 httpsdoiorg1016751524-4695(2004)027[0289FIGBHN]20CO2
VolterraV(1926)Variazioniefluttuazionidelnumerodrsquoindividuiinspe-cieanimaliconviventiMemoria Della Reale Accademia Nazionale Dei Lincei231ndash113
Watson J W (2002) Comparative home ranges and food hab-its of bald eagles nesting in four aquatic habitats in westernWashington Northwestern Naturalist 83 101ndash108 httpsdoiorg1023073536608
WatsonJWStinsonDWMcAllisterKRampOwensTE (2002)PopulationstatusofbaldeaglesbreedinginWashingtonattheendofthe20thcenturyJournal of Raptor Research36161ndash169
WhiteAFHeathJPampGisborneB(2006)Seasonaltimingofbaldeagleattendanceandinfluenceonactivitybudgetsofglaucous-wingedgullsinBarkleySoundBritishColumbiaWaterbirds29497ndash500httpsdoiorg1016751524-4695(2006)29[497STOBEA]20CO2
ZarJH (2009)Biostatistical analysis5thedUpperSaddleRiverNJPrenticeHall
How to cite this articleHensonSMDesharnaisRAFunasakiETGalushaJGWatsonJWHaywardJLPredatorndashpreydynamicsofbaldeaglesandglaucous-wingedgullsatProtectionIslandWashingtonUSAEcol Evol 2019001ndash18 httpsdoiorg101002ece35011
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
14emsp |emsp emspensp HENSON Et al
APPENDIX AModel Analysis
EQUILIBRIA
Theequilibriaofmodel(2)arefoundbysettingthederivativetozeroineachdifferentialequationfactoringtheresultingsystemofalgebraicequationstoobtain
andsolvingforthestatevariablesGandEThisproducesorderedpairs(GE)thatsatisfybothequationssimultaneouslyOnecancheckthatthereareexactlyfourpossibleequilibriumpairs(00)(K0)(0C)and(GE)with
BIOLOG IC ALLY FE A SIBLE EQUILIBRIA
Anequilibrium(GE)isbiologicallyfeasibleifbothGge0andEge0Theequilibria(00)(K0)and(0C)arethereforealwaysbiologicallyfeasi-bleItisstraightforwardtocheckthatthecoexistenceequilibrium(GE)isbiologicallyfeasibleifandonlyifrgeαCIfequalityholdsthatisifr = αCthen(GE)collapsestothe(0C)equilibriumWesaythat(GE) is positiveifandonlyif
ThusthecoexistenceequilibriumispositiveifandonlyiftheinherentgrowthraterofthegullpopulationisgreaterthantherateatwhichgullscanbetakenbyCeaglepairs
G
(rminus
r
KGminusE
)=0
E
(sminus
s
CE+G
)=0
G=sK
(rminus120572C
)
120572120573KC+ rsand E=
rC(s+120573K
)
120572120573KC+ rs
(A1)rgt120572C
F I G U R E A 1 emspPoissonregressionrelationshipbetweennumberofbaldeaglesonProtectionIslandandoccupiedbaldeagleterritoriesinWashingtonStatefromEquation(11)inthemaintext
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp15HENSON Et al
S TABILIT Y OF THE EQUILIBRIA
ThestabilityofeachequilibriumpairisdeterminedbytheprocessoflinearizationAcomprehensiveoverviewoflinearizationandstabilityanalysisisfoundinHenson(2012)LinearizationinvolvescomputingtheJacobianmatrix
attheequilibriumpairandfindingitseigenvaluesIfbotheigenvaluesofJacobianmatrixarenegativerealnumbersthentheequilibriumiscalledastablenodeandnearbysolutionsapproachitinanonoscillatoryfashionIftheeigenvaluesareacomplexconjugatepairwithnegativerealpartthentheequilibriumiscalledastablespiralandnearbysolutionsapproachitinanoscillatoryfashionIfatleastoneoftheeigenval-uesispositiveoriftheeigenvaluesareacomplexconjugatepairwithpositiverealpartthentheequilibriumisunstableAttheequilibrium(00)theJacobianmatrixhastwopositiveeigenvaluesλ = randλ = shencetheequilibriumsolution(00)isalways
unstableAtequilibrium(K0)theJacobianhasonepositiveeigenvalueλ = s + βKandonenegativeeigenvalueλ=minusrThereforetheequilib-riumsolution(K0)isalsounstableAtequilibrium(0C)theJacobianhasoneeigenvaluethatisalwaysnegativeλ=minussandoneeigenvaluethatcanbeeitherpositiveor
negativeλ = r minus αCIfcondition(A1)holdsthesecondeigenvalueispositivesotheequilibrium(0C)isunstableNotethatthecoexist-enceequilibriumsolution(GE)ispositiveonlyif(0C)isunstableAtthecoexistenceequilibrium(GE)theeigenvaluesare
If(A1)holdsthenbotheigenvaluesarenegative(ifreal)orhavenegativerealpart(ifcomplex)Thusifthecoexistenceequilibrium(GE)isposi-tivethenitisstableWhetheritisastablenodeorstablespiraldependsontheparametervalues
J(GE)=
⎡⎢⎢⎢⎢⎣
rminus2r
KGminusE
minusG
E sminus2s
CE+G
⎤⎥⎥⎥⎥⎦
=
minus[(rminusC)+ (s+K)
]plusmn
radic[(rminusC)+ (s+K)
]2minus4(rminusC)(s+K)
(1+
KC
rs
)
2(1+
KC
rs
)
F I G U R E A 2 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesNormalquantile-quantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeagles
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
16emsp |emsp emspensp HENSON Et al
SUMMARY
Ifr gt αCthenallfourequilibriumpairsarebiologicallyfeasibleTheequilibria(00)(K0)and(0C)areunstableandthecoexistenceequilib-rium(GE)ispositiveandstableThesystemwillapproachcoexistenceeitherwithorwithoutdampedoscillationsdependingonwhethertheeigenvaluesarecomplexorrealIfr lt αCthecoexistenceequilibriumisnotbiologicallyfeasibleTheequilibria(00)and(K0)areunstableandtheequilibrium(0C)is
stableInthiscasethegullpopulationwillgoextinctandtheeaglepopulationwillapproachitscarryingcapacity
APPENDIX BGraphical Analyses of Model ResidualsWeconductedagraphicalanalysisofthemodelresidualsdefinedinEquation(5)Theseresidualsarethelog-scaledeviationsfromthepre-dictedgullandeaglenumbersobtainedusingthemodel(4)withthepointestimatesoftheparametersandtheobservedvaluesafterdividingbytheirrespectivestandarddeviationsThefirsttwopanelsofFigureA2showtheresidualsplottedasafunctionoftimeThereisnoevidence
Parameter or Quantity
Coupled least squares
Decoupled least squares
Using regression‐predicted eagle numbers for PI
g0 3663 3663 3748
e0 1067 1069 2119
r 02327 02338 05031
K 7395 7376 4913
α 00002417 00002419 0007187
s 01809 01803 01333
C 8231 8254 6500
β 1876x10-23 mdash 1580x10-7
G 1072 1076 3498
E 8231 8254 6502
R2 819 819 789
RA2 772 779 735
TA B L E A 1 emspPointparameterestimatesandcoefficientsofdeterminationforthethreemethodsofparameterestimation(PI=ProtectionIsland)
F I G U R E A 3 emspScatterplotmatrixofthe2000bootstrappedparameterestimatesexcludingβwhichwasalwaysclosetozero
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
emspensp emsp | emsp17HENSON Et al
ofsystematicdeparturesfromzeroalthoughtheresidualsforgullsaresmallerintheearlieryearsThelasttwopanelsofFigureA2shownormalquantilendashquantileplotsofthegullandeagleresidualsThedashedlineisthenormaldistributionexpectationandthesolidlineisthereferencelineconnectingthefirstandthirdquartilesThereisnoevidenceintheseplotsoflargesystematicdeviationsfromnormality
APPENDIX CParameter Estimation for Decoupled EquationsForthefullmodel(2)inthemaintexttheparameterβ istheconversionrateofgullsintoeaglebirthsOurestimateofβ=1876times10minus23 is effectivelyzeroThismightbeexpectedsinceweareusingstatewidedataforeagleswhilegullpopulationnumbersarelocaltoProtectionIslandIfweassumeapriorithatβ=0thenwecandecoupletheequationsforeaglesfromtheequationforgullsandestimatetheparametersfortheeaglepopulationseparatelyThepredicteddensitiesfortheeaglepopulationcanthenbeusedtofindbestfittingparameterestimatesforgullsTwoadvantagesofthisapproachare(a)thepopulationdensitiesdonotneedtobescaledbythestandarddeviationstoarriveatcommensuratenumbersforeaglesandgullsand(b)thereisonelessparametertobeestimated
F I G U R E A 4 emspTimeseriesplotsofobserved(circles)andmodel-predictednumbersfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandThedashedcurveinpanelAisthepredictionforgullsbasedonthestatewidedata
F I G U R E A 5 emspTimeseriesplotsofmodelresidualsfor(a)glaucous-wingedgullsand(b)baldeaglesbasedontheregression-predictedeaglenumbersforProtectionIslandNormalquantilendashquantileplotsofmodelresidualsfor(c)glaucous-wingedgullsand(d)baldeaglesComparetoFigureA2
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)
18emsp |emsp emspensp HENSON Et al
WeusedthedecoupledequationapproachtoobtainasetofparameterestimatesforcomparisontotheestimatesinTable2Eagledensitiescanbecomputeddirectlyusingtheclosedformsolutionofthelogisticequation
Wecomputedresidualsbetweenthepredictedandobservedeaglenumbersonalogscale
Weobtainedparameterestimatesfore0sandCbyminimizingthesumofthesquaredvaluesfortheseresidualsWethensubstitutedequa-tion(A2)intothedifferentialequationforthegullpopulationandusednumericalintegrationtoobtainpopulationpredictionsgtforgullsWecomputedresidualsonthelogscale
andestimatedtheparametersg0rKandαbyminimizingsum
2t
TableA1liststheparameterestimatesandcoefficientsofdeterminationforthestatisticalmethodfromthemaintextandtheonepre-sentedhereFortheapproachinvolvingthedecoupledequationswescaledtheobservedandpredictedvaluesusingtheobservedstandarddeviationsforthegullandeagledataandcomputedRMSasgiveninEquation(6)WeusedthistocomputeR2andRA
2asdescribedinthemaintextForEquation(9)thenumberofestimatedparameterswasp=8forthecoupledleastsquaresapproachandp=7forthemethodpresentedhereTheparameterestimatesforthetwomethodsarenearlyidenticalTheyhadequivalentgoodness-of-fitsbasedonthecoefficientofdeter-
minationR2HoweversincethedecoupledmodelhadonelessparameterithasaslightlyhigheradjustedcoefficientofdeterminationRA2
(A2)et=
C
1+(Cminuse0
e0
)exp (minusst)
(A3)t= ln(Et)minus ln
(et(e0sC)
)
(A4)t= ln(Gt
)minus ln
(gt(g0rK)
)