powerpoint 簡報2011.igem.org/files/presentation/nctu_formosa.pdf · relative protein expression...
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Vitamin Synthesis
Biofuel Drug
Thermo-induced Device
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RBS GFP J23114
RBS CI
PcI
J23101 37 oC RBS
GFP
37oC induced Device
42oC induced Device
J23114 RBS CI
PcI
RBS GFP
42oC induced Device
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42oC Induced Device
42oC Induced Device - Modeling
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GFPtgGFPdt
GFPdGFPTemp
J23114 RBS CI
PcI
RBS GFP
0%
20%
40%
60%
80%
100%
25℃ 37℃ 42℃
Relative Protein Expression Activity
J23101 37 oC RBS
GFP
0
500
1000
1500
2000
2500
3000
3500
4000
0 2 4 6 8 10
MEFL
HR
27 ℃
32 ℃
37 ℃
42 ℃
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37oC Induced RBS
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0%
20%
40%
60%
80%
100%
120%
25℃ 30℃ 37℃ 42℃
Relative Protein Expression Activity
The relative translational activity of thermo-induced RBS BBa_K115002 at 25°C, 30°C, 37 °C and 42°C were estimated.
37oC Induced RBS - Modeling
J23101 37oC RBS
GFP
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Farnesyl diphosphate
Phytoene
Lycopene
β-carotene
Geranylgerabyl diphosphate
crtE
crtB
crtI
crtY
crtZ
30oC
37oC device
42oC device
Carotenoid Synthesis Pathway
42oC induced Device
crtZ
J23114 RBS CI
PcI
RBS
crtY 370 RBS
J23103
crtE crtI crtB RBS RBS RBS
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Carotenoid Biobrick
30 oC
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crtY 370 RBS
J23103
crtE crtI crtB RBS RBS RBS
42oC induced Device
crtZ J23114
RBS CI
PcI
RBS
30oC
Lycopene
30 oC
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crtY 370 RBS
J23103
crtE crtI crtB RBS RBS RBS
42oC induced Device
crtZ J23114
RBS CI
PcI
RBS
crtY 370 RBS
37oC
30oC 37oC
β-carotene
30 oC
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crtY 370 RBS
J23103
crtE crtI crtB RBS RBS RBS
37oC
J23114 RBS CI
PcI
RBS crtZ crtZ J23114
RBS CI
PcI
RBS
42 oC
Zeaxanthin
30oC 37oC 42oC
30oC 37oC 42 oC
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Results
30oC
37oC
42oC
We can make the pathway stop at the certain step by controlling temperature.
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Vitamin Synthesis Biofuel
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Biofuel
Motivative
Gene strains Length(bp)
ilvC ketol-acid reductoisomerase,
NAD(P)-binding
Escherichia coli str. K-12
substr. MG1655
1473
ilvD dihydroxyacid dehydratase,
Escherichia coli str. K-12
substr. MG1655
1848
alsS
alpha-acetolactate synthase
protein,
Bacillus subtilis 1713
kivd
alpha-ketoisovalerate
decarboxylase,
Lactococcus lactis subsp.
lactis KF147
1734
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Clone genes
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Modify the RE Site P E X S E P P X
Mutate 4 RE site
alsS
E X S P E E
Mutate 2 RE site
ilvC
E X S P P
Mutate 1 RE site
ilvD
P E X S E
Mutate 1 RE site
kivd
alsS
ilvC
ilvD
kivd
Pyruvate
2-Ketoisovalerate
Isobutyraldehyde
Isobutanol
2-Acetolactate
Glucose
2,3-Dihydroxy-isovalerate
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Butanol Synthesis Pathway
Plac
RBS alsS ilvD ilvC RBS RBS RBS kivd
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alsS
ilvC
ilvD
kivd
Pyruvate
2-Ketoisovalerate
Isobutyraldehyde
Isobutanol
2-Acetolactate
Glucose
2,3-Dihydroxy-isovalerate
In Traditional Circuit
ADH
Pyruvate
2-Ketoisovalerate
Isobutyraldehyde
2-Acetolactate
Glucose
2,3-Dihydroxy-isovalerate
alsS
ilvC
ilvD
kivd
37 oC
30 oC
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Butanol Synthesis Pathway
Plac
RBS alsS ilvD ilvC tetR RBS RBS 370 RBS
RBS kivd
Ptet
Pyruvate
2-Ketoisovalerate
Isobutyraldehyde
Isobutanol
2-Acetolactate alsS
ilvC
ilvD
kivd
Glucose
2,3-Dihydroxy-isovalerate
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Butanol Biobrick
ADH
2-Ketoisovalerate
kivD
Ptet
RBS
Pyruvate
2-Acetolactate alsS
ilvC
ilvD
Isobutyraldehyde
Isobutanol
kivd
Glucose
2,3-Dihydroxy-isovalerate
37 oC
kivd
Ptet
RBS
tetR
2-Ketoisovalerate
Plac
RBS alsS ilvD ilvC tetR RBS RBS 370 RBS
37oC
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ADH
kivd
Ptet
RBS
Pyruvate
2-Ketoisovalerate
2-Acetolactate alsS
ilvC
ilvD
Isobutyraldehyde
Isobutanol
kivd
Glucose
2,3-Dihydroxy-isovalerate
30 oC
30 oC
kivd 2-Ketoisovalerate
Isobutanol
Plac
RBS alsS ilvD ilvC tetR RBS RBS 370 RBS
tetR 370 RBS
37oC 30oC
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0hr.(Without 30oC incubation) 24hr.(Incubation at 30oC)
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Isobutanol Produce Test in 30oC
30⁰C 42⁰C
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Isobutanol Produce Test in 30oC, 42oC
0
50
100
150
200
250
300
350
400
450
30 ℃ 37 ℃ 42 ℃
Iso
bu
tan
ol c
oc.
(p
pm
)
Temperature Non-temperature controlled device
Low-temperature released device
Plac
RBS alsS ilvD ilvC tetR RBS RBS 370 RBS
RBS kivd
Ptet
Plac
alsS ilvD ilvC RBS kivd RBS RBS RBS
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Comparison of Isobutanol Production
30oC 37oC 42oC
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Biofuel Drug
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IPA imine
IPA imine dimer
I-tryptophan
Protodeoxyviolaceinic acid(PVA)
Deoxychromoviridans Protoviolaceinic acid
Violacein
Biosynthesis Pathway
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Protoviolaceinic acid
I-tryptophan
Protodeoxyviolaceinic acid(PVA)
IPA imine
vioA 30⁰C
37⁰C
42⁰C
IPA imine dimer
Deoxychromoviridans
Violacein
vioB
vioE
vioD
vioC
vioC 42⁰C
Violancein Pathway
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Ptet
RBS vioA vioB vioE RBS RBS
tetR
Plac
vioD 370 RBS
370 RBS
A.
B.
C.
Violancin Biobrick
vioC RBS lacI RBS tetR
42oC induced Device
J23114
RBS CI
PcI
RBS
I-tryptophan
PVA
IPA imine
vioA
IPA imine dimer
Protoviolaceinic acid
Deoxychromoviridans
Violacein
vioB
vioE
vioD
vioC
vioC
I-tryptophan
PVA
IPA imine
vioA
IPA imine dimer
Protoviolaceinic acid
Deoxychromoviridans
Violacein
vioB
vioE
vioD
vioC
vioC
30oC
Ptet
RBS vioA vioB vioE RBS RBS
tetR
Plac
vioD 370 RBS
370 RBS
tetR
Plac
vioD 370 RBS
370 RBS
C.
A.
B.
vioC RBS lacI RBS tetR RBS
42oC induced Device
J23114
RBS CI
PcI
30oC
30oC
vioC RBS lacI RBS tetR
J23114
RBS CI
PcI
RBS
PVA
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I-tryptophan
PVA
IPA imine
vioA
IPA imine dimer
Protoviolaceinic acid
Deoxychromoviridans
Violacein
vioB
vioE
vioD
vioC
vioC
30oC42oC
Ptet
RBS vioA vioB vioE RBS RBS
tetR
Plac
vioD 370 RBS
370 RBS
42 oC
Deoxychromoviridans
30oC
42oC
Ptet
RBS vioA vioB vioE RBS RBS
tetR
Plac
vioD 370 RBS
370 RBS
C.
A.
B.
vioC RBS lacI RBS tetR RBS
42oC induced Device
J23114
RBS CI
PcI
lacI tet
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Protoviolaceinic acid
I-tryptophan
Protodeoxyviolaceinic acid(PVA)
IPA imine
vioA
IPA imine dimer
Deoxychromoviridans
Violacein
vioB
vioE
vioD
vioC
vioC
Violancein Pathway
37oC
42oC
30⁰C
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Drug Achivements
Achievements
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Designed “Pathway Commander”
Carotenoid synthesis pathway : BBa_K539151 and BBa_K539281
BBa_K539151 and BBa_K539281
Achievements
Designed “Pathway Commander”
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Achievements
Carotenoid synthesis pathway : BBa_K539151 and BBa_K539281
Designed “Pathway Commander”
Isobutanol pathway : BBa_K539691 and BBa_K539742
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Achievements
BBa_K118008
RBS vioA vioC vioB vioE RBS RBS RBS
BBa_K274004
Correct point mutation : BBa_K118008 and BBa_K274004
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Achievements
BBa_K098995
BBa_K115002
Characterize Biobrick (modeling) : BBa_K098995 and BBa_K115002
Correct point mutation : BBa_K118008 and BBa_K274004
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alsS
ilvC
ilvD
kivd
Achievements
Correct point mutation : BBa_K118008 and BBa_K274004
Characterize Biobrick (modeling) : BBa_K098995 and BBa_K115002
Submit novel Biobricks: alsS, ilvC, ilvD and kivd
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Submit 46 biobricks
Achievements
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Hsien-Da Huang Ching-Ping Tseng
Jenn-Kang Hwang Hsiao-Ching Lee
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Acknowledgement
We are NCTU Formosa !
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