PNAMP Inventory of Aquatic Monitoring PNAMP Inventory of Aquatic Monitoring Interim Results and Future DirectionsInterim Results and Future Directions

Adam StorchAdam Storch

andand

Mike BanachMike Banach

Pacific States Marine Fisheries Commission/StreamNetPacific States Marine Fisheries Commission/StreamNet

PNAMP Steering Committee MeetingPNAMP Steering Committee Meeting

11 Oct 200611 Oct 2006

Monitoring Type X Indicators

Biological: fish (1)Biological: fish (1)Indicators N

Juvenile abundance 73

Length/frequency distribution

71

Number of redds 58

Juvenile distribution 54

Adults/redd 52

Juvenile size 51

Redd distribution 51

Run timing (adults) 50

Spawning timing 50

Age structure 49

Spawner distribution 49

Escapement 48

Smolt abundance 44

Total spawner abundance 44

Male: female ratio 42

Presence / absence 42

Carcass count 41

Sex ratio 39

Smolt size 39

Adult age at return 38

Emigration timing 35

Hatchery origin fish on spawning grounds

35

Indicators N

Adult passage timing 34

Smolt passage timing 34

Emigration size 30

Female spawner abundance 30

CPUE 28

Carcass length at age 26

Smolt to adult return rate (SAR)

26

Stray rate 26

Nonnative / invasive species 25

Pre-spawning mortality 25

Carcass distribution 24

Relative reproductive success

24

Smolt distribution 24

Smolt health 24

Stock identification 24

Growth rates 23

Recruits per spawner 23

Dam counts 21

Diversity 21

Parr to smolt survival 19

H-W success 17

Smolts/adult 17

Indicators N

  16

Fecundity 16

Effective number of breeders

15

Allelic richness 14

Harvest in-river 13

Number of natural residuals 13

Smolts/female 13

Phenotypic data 12

Smolts/redd 12

Dam passage mortality 11

Total catch of each stock in fishery

10

Heterozygosity 9

Carcass disease 8

Harvest - ocean 8

Gonadal somatic index (GSI)

4

Harvest effect 4

Piscivory index 4

Ascendency 3

Condition factor 2

Cost per adult harvested 2

fish passage 2

Indicators N

Habitat Quality 2

population estimate 2

Redd counts 2

Relative abundance 2

Adult annual survival 1

Adult Count 1

Adult Distribution 1

Age–at-Emigration 1

Capture efficiency 1

Capture survival 1

Carcass gender 1

Carcass length 1

Carcass scales 1

Carcass tissue 1

Coded wire tag recovery 1

Composition/Abundance 1

Diet Analysis 1

Diet information 1

Disease assays 1

Disease Frequency 1

Distribution size growth and abundance of other pelagic fishes (threespine sticklebacks and longfin smelt)

1

Biological: fish (2)Biological: fish (2)Indicators N

Distrobution- habitat abundance and fish passage barriers

1

Egg-to-smolt survival 1

entrainment rate 1

Estimate annual relative abundance

1

finite rate of population change

1

Fish Condition and Numbers 1

Fish interogation (raw data): 1

Full species assemblage 1

Gas Bubble Trauma 1

genetic characterization 1

Habtat availability 1

In-hatchery Life Stage Survival

1

Juvenile movement rates/patterns within stream

1

Juvenile Survival to all Mainstem Dams

1

Juvenile Survival to Lower Granite Dam

1

larval abundance larval size larval distribution

1

Live adults 1

Indicators N

migration distribution 1

migration of radio tagged fish 1

migration timing 1

Monitoring as an Index Survey

1

Mortality (raw data; tagged fish)

1

movements 1

ocean conditions forage fish abundance predatory fish abundance predatory fish food habits zooplankton densities

1

passage frequency 1

passage location 1

passage timing 1

PI (Parasitic Index)relative weight of parasite burden per fish

1

PIT Tag Ladder Detections 1

plerocercoids of tapeworm Schistocephalus solidus

1

population identification 1

Post-release Survival 1

Biological: fish (3)Biological: fish (3)Indicators N

Presence or absence of juvenile Chinook salmon in side channel habitat during winter months

1

Prevalence intensity of parasitic nematode Anisakis simplex

1

Prevalence and mean intensity of infection with S. solidus

1

Recapture (raw data; tagged fish) 1

recovery of population after a debris flow in 1986 1

Relative numbers 1

Release (raw data; tagged fish) 1

Reservoir survival 1

Return spawner gender 1

Return spawner length 1

Return spawner scales 1

Separation by code (raw data; fish diversion) 1

Size-at-Return 1

Smolt survival (in and out-of-basin) 1

Smolts-per-spawner 1

spacial distribution 1

species 1

stable istopes 1

Tagging (raw data) 1

Transport survival 1

Transported 1

viral disease 1

Biological: Biological: amphibians/reptilesamphibians/reptiles

Indicators N

Species composition 5

Species distribution 5

Species diversity 4

Nonnative / invasive species 2

Amphibian recovery rates 1

Mortality 1

Indicators N

Species diversity 8

Species composition 7

Species distribution 5

Mortality 2

Nonnative / invasive species 1

Biological: Biological: birdsbirds

Indicators N

Species composition 22

Species diversity 21

Species distribution 18

Nonnative / invasive species 10

  6

EPT 6

age distribution 1

B-IBI per Karr and Chou 1

Biomass 1

Invertebrate abundance (families; archived samples)

1

Length frequency/distribution (Cancer spp.) 1

Level III Bioassessment (Oregon Plan water quality monitoring guide)

1

Parasite infection prevalence 1

Recolonization rates 1

Sex ratio (Cancer spp.) 1

Biological: Biological: macroinvertebratesmacroinvertebrates

Biological: Biological: vegetationvegetation

Biological: Biological: otherotherIndicators N

algae 1

channel morphology 1

connectivity 1

DO levels 1

fish presence 1

Insects 1

in-stream habitat 1

pH 1

riparian vegetation 1

stream reach mapping 1

Turbidity 1

Velocity 1

water temperature 1

Indicators N

Nonnative / invasive species 17

Species composition 11

Canopy cover 10

  7

Species diversity 7

Riparian vegetation structure 6

Above ground biomass 1

Algal Biomass (AFDW) 1

Algal Chlorophyll a 1

Algal Productivity 1

Below ground biomass 1

Diameter 1

Leaf Trapping 1

Plant density 1

Survival 1

Survival tree height competition damage limiting factors maintenance needs etc.

1

OtherOtherIndicators N

  6

Frequency of commercial vessel arrivals and the submission of federal and state ballast water reports

2

Air Temp 1

Barometric Pressure 1

Conductivity 1

ground water level 1

Groundwater Levels 1

Groundwater Temperature 1

Marbeled Murrelets 1

Orcas 1

Other 1

Photosynthetically Active Radiation 1

Rainfall 1

Relative Humidity 1

Salmonids 1

Solar radiation 1

Stream and riparian health 1

Stream Flow (Mosier Creek) 1

Indicators N

This is an integrated monitoring program that includes physical chemical and biological parameters including fish amphibians water chemistry temperature (profile and annual) habitat zooplankton chlorophyll watershed condition (disturbance)

1

This is an integrated program that includes fish benthic macroinvertebrates habitat water chemistry and temperature.

1

This is an integrated program that includes Fish Communities Physical Habitat and Macroinvertebrates

1

Wind Direction 1

Wind Speed 1

Physical habitat: Physical habitat: in-streamin-stream

Indicators N

Large woody debris 34

Bankfull width 30

Wetted width 30

Substrate 29

Habitat unit types 27

Thalweg depth 24

Channel type 21

Canopy cover 19

Thalweg profile 19

Habitat class 18

Bankfull height 16

Cover 15

Slope and bearing 14

Bank undercut 11

Bank incision 8

Bank angle 7

  3

air temperature 1

armour and sub armour layer gravel size distributions.

1

Indicators N

Bank riparian 1

cross-section survey 1

Embeddedness 1

fish presence 1

ODFW stream survey protocols are used. Other indicators may be collected than what is provided.

1

Particle size distribution percent fine sediment bar count riffle stability index channel cross sections and gradient

1

Pool 1

pool measurement 1

Radiation (PAR UV Relative Intensity)

1

Residual pool depth 1

riparian vegetation success 1

sinuosity pool tail crest fines residual pool depth

1

Stream depth 1

Structure integrity 1

Velocity 1

Water depth (1 m interval) 1

Physical habitat: Physical habitat: riparianriparian

Indicators N

Riparian vegetation structure 15

Canopy cover 9

Elevation 8

Substrate type 6

  4

Air temperature 2

Bankfull Width and Depth 1

Channel substrate 1

Elevation derived from DEMs 1

fish passage 1

greenline-to-greeenline width 1

instream habitat 1

Low Flow 1

percent survival 1

Riparian characteristics are from LANDSAT remote sensing data. 1

stream bank condition 1

Stream Temperature 1

Streamback stability 1

streambank alteration 1

streambank stability 1

stubble height 1

Indicators N

Vegetation species composition 1

Water supply & duration 1

woody browse 1

woody regeneration 1

Physical habitat: Physical habitat: freshwater wetlandfreshwater wetland

Physical habitat: Physical habitat: lake/pond/reservoirlake/pond/reservoir

Physical habitat: Physical habitat: estuarineestuarine

Indicators N

Tidal range 6

Vegetation type 6

Emergent vegetation 5

Depth 4

Elevation 4

Salinity 4

Species composition 4

Substrate type 3

Dikes 2

Large wood count 2

water temperature 2

Air temperature 1

Armoring 1

Channelization 1

dissolved oxygen 1

Floodplain width 1

Soil salinity 1

Indicators N

Vegetation type 6

Species composition 5

Substrate type 3

aquatic macroinvertebrates 1

birds 1

'connectivity' to river 1

hydric soils 1

Hydrology 1

hydrology and soils 1

Vegetation cover 1

Water flow temp depth 1

Water supply and duration 1

wetland hydrology 1

Indicators N

Substrate type 2

Bathometric mapping 1

Depth 1

Shoreline/littoral condition 1

Physical habitat: Physical habitat: uplandupland

Indicators N

  2

Land cover 2

Area 1

Elevation 1

Erosion and drainage features 1

Land use 1

Riparian zone 1

Road density 1

Stream layer 1

Soil and sediment Soil and sediment qualityquality

Indicators N

  1

Contaminants 1

Erosion 1

Grain size 1

Organic content 1

Percent fines in spawning substrate 1

Indicators N

Flow volume/timing 36

Flow diversion/timing 10

  5

Ground water/water table 3

Determining Minimum Instream Flows

1

discharge measurements 1

Precipitation 1

temperature 1

There are a variety of projects under the IWWP. They are all designed to reduce urban stormwater flow.

1

water elevations 1

Water Temperature 1

Water Water quantityquantity

Water quality (1)Water quality (1)Indicators N

Temperature 83

Dissolved oxygen 68

Conductivity 63

pH 62

Turbidity 54

Nutrients 41

Fecal coliforms 34

Algae / chlorophyll 17

Suspended solids 15

Suspended sediment 15

  15

Macroinvertebrates 14

Alkalinity 10

Salinity 9

Heavy metals 8

Pesticides 6

BOD 6

Total phosphorus 4

Light absorption/scattering 4

Contaminants 4

Major ions 3

Flow 3

Total Dissolved Gas 2

phytoplankton 2

Indicators N

Phosphorus 2

Nitrogen 2

Nitrate-trite 2

Herbicides 2

Ammonia 2

zooplankton 1

Water quality (2)Water quality (2)Indicators N

Water Level 1

Total kjeldahl nitrogen 1

Total coliform bacteria 1

Total Carbon 1

TDG 1

Tailrace Elevation 1

Sulfate 1

Stream Temperature 1

Stable isotopes of nitrogen and carbon

1

Reservoir Elevation 1

Precipitation 1

Plankton 1

Pharmaceuticals 1

PCBs 1

PBDEs 1

Nutrient limitation assays 1

Nitrate 1

light absorption 1

fish 1

Estimated Flow 1

Enterococcus bacteria 1

E.coli 1

E. coli bacteria 1

Indicators N

Discharge 1

Depth 1

Chloride 1

Bedload Sediment 1

Bacteria 1

amphibians 1

Ammonia-nitrogen 1

Air Temperature 1

Monitoring Type X Taxa

Biological: fish (1)Biological: fish (1)Taxon N

Chinook salmon (Oncorhynchus tshawytscha) 102

Steelhead (Oncorhynchus mykiss) 81

Coho salmon (Oncorhynchus kisutch) 62

Bull trout (Salvelinus confluentus) 43

Rainbow/redband/steelhead trout (Oncorhynchus mykiss) 43

Cutthroat trout (Oncorhynchus clarki) 33

Chum salmon (Oncorhynchus keta) 30

  24

Brook trout (Salvelinus fontinalis) 24

Coastal cutthroat trout (Oncorhynchus clarki clarki) 21

Pink salmon (Oncorhynchus gorbuscha) 18

Pacific lamprey (Lampetra tridentata) 17

Threespine stickleback (Gasterosteus aculeatus) 17

Mountain whitefish (Prosopium williamsoni) 16

Sockeye salmon (Oncorhynchus nerka) 16

Northern pikeminnow (Ptychocheilus oregonensis) 15

White sturgeon (Acipenser transmontanus) 14

American shad (Alosa sapidissima) 13

Kokanee (Oncorhynchus nerka) 13

SALMONIDS (SALMONIDAE) 12

Taxon N

Largescale sucker (Catostomus macrocheilus) 10

Redside shiner (Richardsonius balteatus) 10

Brown trout (Salmo trutta) 9

Peamouth (Mylocheilus caurinus) 9

Surf smelt (Hypomesus pretiosus) 9

Speckled dace (Rhinichthys osculus) 8

Westslope cutthroat trout (Oncorhynchus clarki lewisi) 8

Yellow perch (Perca flavescens) 8

Black crappie (Pomoxis nigromaculatus) 7

Bluegill (Lepomis macrochirus) 7

Bridgelip sucker (Catostomus columbianus) 7

Pacific herring (Clupea pallasii) 7

Pacific staghorn sculpin (Leptocottus armatus) 7

Shiner perch (Cymatogaster aggregata) 7

Biological: fish (2)Biological: fish (2)Taxon N

Starry flounder (Platichthys stellatus) 7

Chiselmouth (Acrocheilus alutaceus) 6

Common carp (Cyprinus carpio) 6

Green sturgeon (Acipenser medirostris) 6

Largemouth bass (Micropterus salmoides) 6

Longnose dace (Rhinichthys cataractae) 6

Longnose sucker (Catostomus catostomus) 6

Pumpkinseed (Lepomis gibbosus) 6

Reticulate sculpin (Cottus perplexus) 6

Smallmouth bass (Micropterus dolomieu) 6

All anadromous salmonids 5

Atlantic salmon (Salmo salar) 5

Brown bullhead (Ameiurus nebulosus) 5

Dolly Varden (Salvelinus malma) 5

Prickly sculpin (Cottus asper) 5

Saddleback gunnel (Pholis ornata) 5

SCULPINS (COTTIDAE) 5

Secondary: 5

Eulachon / candlefish (Thaleichthys pacificus) 4

LAMPREYS (PETROMYZONTIDAE) 4

Paiute sculpin (Cottus beldingii) 4

SUCKERS (CATOSTOMIDAE) 4

Taxon N

Torrent sculpin (Cottus rhotheus) 4

Yellow bullhead (Ameiurus natalis) 4

Banded killifish (Fundulus diaphanus) 3

Black bullhead (Ameiurus melas) 3

CARPS AND MINNOWS (CYPRINIDAE) 3

Coastrange sculpin (Cottus aleuticus) 3

Leopard dace (Rhinichthys falcatus) 3

Lost River sucker (Deltistes luxatus) 3

Mottled sculpin (Cottus bairdii) 3

Mountain sucker (Catostomus platyrhynchus) 3

Pacific brook lamprey (Lampetra pacifica) 3

Riffle sculpin (Cottus gulosus) 3

Sand roller (Percopsis transmontana) 3

Shortnose sucker (Chasmistes brevirostris) 3

Western mosquitofish (Gambusia affinis) 3

Amur goby (Rhinogobius brunneus) 2

Burbot (Lota lota) 2

CATFISHES (ICTALURIDAE) 2

Channel catfish (Ictalurus punctatus) 2

Dicamptodon (Pacific giant salamander) 2

Goldfish (Carassius auratus) 2

Green sunfish (Lepomis cyanellus) 2

Klamath largescale sucker (Catostomus snyderi) 2

Biological: fish (3)Biological: fish (3)Taxon N

Northern pike (Esox lucius) 2

Oriental wheatherfish (Misgurnus anguillicaudatus)

2

Pacific razor clam (Siliqua patula) 2

Sand Lance (Ammodytes Hexapterus) 2

Shorthead sculpin (Cottus confusus) 2

SUNFISHES (CENTRARCHIDAE) 2

Walleye (Sander vitreus) 2

Warmouth (Lepomis gulosus) 2

White crappie (Pomoxis annularis) 2

Yellowstone cutthroat trout (Oncorhynchus clarki bouvieri)

2

All anadromous species 1

all incidental in traps 1

All Incidental Species Recorded 1

Arctic char (Salvelinus alpinus) 1

Arctic grayling (Thymallus arcticus) 1

bay pipefish (Syngnathus leptorhynchus) 1

Blue sucker (Cycleptus elongatus) 1

Borax Lake chub (Gila boraxobius) 1

Bull trout 1

Central mudminnow (Novumbra hubbsi) 1

Chub Mackerel 1

Chum 1

English sole 1

Taxon N

Estuarine and tidal FW species 1

Fall Chinook (Upriver Bright spawning below Bonneville Dam)

1

Fathead minnow (Pimephales promelas) 1

Fish that are monitored with our detection system must be PIT-tagged. Most are juveniles though a few adults and kilts are also detected.

1

Hutton tui chub (Gila bicolor ssp. 1) 1

Jack Mackerel 1

Lahontan cutthroat trout (Oncorhynchus clarki henshawi)

1

Lake trout (Salvelinus namaycush) 1

Lake whitefish (Coregonus clupeaformis) 1

Leatherside chub (Snyderichthys copei) 1

LIVEBEARERS (POECILIIDAE) 1

Longfin smelt (Spirinchus thaleichthys) 1

Marbled sculpin (Cottus klamathensis) 1

Margined sculpin (Cottus marginatus) 1

Misc. estuarine species 1

Northern anchovy 1

only smolt trap data for non-salmonids 1

Oregon chub (Oregonichthys crameri) 1

Pacific cod (Gadus macrocephalus) 1

Pacific hake (Merluccius productus) 1

pacific sanddab (Citharichthys sordidus) 1

Biological: fish (4)Biological: fish (4)Taxon N

pacific sanddab (Citharichthys sordidus) 1

Pacific sardine 1

Pygmy whitefish (Prosopium coulteri) 1

Rock bass (Ambloplites rupestris) 1

Sanddab 1

Sharks 1

Slimy sculpin (Cottus cognatus) 1

Snake River Fine spotted cutthroat trout (Oncorhynchus clarki ssp.)

1

Spoonhead sculpin (Cottus ricei) 1

STICKLEBACKS (GASTEROSTEIDAE) 1

Tadpole madtom (Noturus gyrinus) 1

Tench (Tinca tinca) 1

Tiger muskie 1

TROUT-PERCHES (PERCOPSIDAE) 1

Unknown lamprey ammocoetes 1

Utah chub (Gila atraria) 1

Utah sucker (Catostomus ardens) 1

Warner sucker (Catostomus warnerensis) 1

Western brook lamprey (Lampetra richardsoni)

1

White sucker (Catostomus commersonii) 1

Whitebait smelt 1

Wood River sculpin (Cottus leiopomus) 1

Biological: Biological: amphibians/reptilesamphibians/reptiles

Biological: Biological: birdsbirds

Taxon N

Tailed frog (Ascaphus sp.) 4

Pacific giant salamander (Dicamptodon tenebrosus)

3

Bullfrog (Rana catesbeiana) 2

long-toed salimander 1

Red-legged frog 1

Western pond turtle (Clemmys marmorata) 1

Western spotted frog 1

Taxon N

Caspian tern (Sterna caspia) 3

Double-crested cormorant (Phalacrocorax auritus)

3

  2

Ring-billed gull 2

American white pelican 1

Bald eagle (Haliaeetus leucocephalus) 1

BIRDS OF PREY 1

Brown pelican 1

California gull 1

Glaucous-winged/western gull 1

Great blue heron (Ardea herodias) 1

Neotropical migratory species 1

Osprey (Pandion haliaetus) 1

SHORE/WADING BIRDS 1

Survey of birds in riparian zones of our sampling streams

1

Taxon N

  14

Mussels / clams (Bivalvia) 6

Aquatic Insects 4

Snails (Gastropoda) 4

all species 2

New Zealand mud snail (Potamopyrgus antipodarum) 2

All others 1

aquatic insects in general 1

Crayfish 1

Dungeness crab (Cancer magister) 1

European green crab (Carcinus maenas) 1

Freshwater polychaete (Manayunkia speciosa) 1

Kelp crab 1

non-shellfish benthic macroinvertebrates esp aquatic insects 1

Oligochaetes 1

Ostrea conchaphila 1

Other benthic invertebrates 1

Polychaetes 1

purple urchins 1

Red rock crab (Cancer productus) 1

Shrimp 1

Signal Crayfish 1

Stream macrozoobenthos community 1

Biological: macroinvertebratesBiological: macroinvertebrates

Biological: vegetationBiological: vegetationTaxon N

  10

Invasive species 7

Riparian plants 5

Tidal estuarine marsh plants 4

Upland plants 4

Estuarine plants 3

Japanese knotweed (Polygonum cuspidatum)

3

Smooth/saltmarsh/Atlantic cordgrass (Spartina alterniflora)

3

Tidal freshwater marsh plants 3

Eelgrass/seawrack (Zostera marina) 2

Freshwater wetland plants 2

Purple loosestrife (Lythrum salicaria) 2

Reed canary grass (Phalaris arundinacea) 2

Riparian 2

Alkali cordgrass (Spartina gracilis) 1

Aquatic inventory included some wetland plant species

1

Buddleja davidii 1

Dense-flowerd cordgrass (Spartina densiflora)

1

Dicot herbs 1

English cordgrass (Spartina anglica) 1

European Bittersweet 1

Taxon N

Grasses 1

Japanese Giant and Bohemian Knotweeds 1

Japanese eelgrass (Zostera japonica) 1

Native eelgrass (Zostera marina) 1

Noxious Weeds 1

Other monocots 1

Polygonum cuspidatum Polygonum sachalinense and Polygonum bohemicum

1

Saltmeadow cordgrass (Spartina patens) 1

Sedges 1

Trees or shrubs 1

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Return information only for the following HUC:

Dreissena polymorpha

1711000904