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Platform for Translational Medicine:Oracle ExamplesRaghbir Bains PhDBusiness Develipment Director, Life Sciences,EMEA
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Industry ChallengesDecreasing R&D Efficiency
Capitalized Costs Increased 481%
8454 214
104
336
466
0
100
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MIL
LIO
NS
OF
2000
DO
LLA
RS
1970s Approvals 1980s Approvals 1990s Approvals
Non-Clinical Costs Clinical Costs
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Industry ChallengesIncrease R&D Spending; All Time Low for New Drugs
26 2522
28
53
39
30
35
2724
17
21
16
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$11.50$12.70 $13.40
$15.20$16.90
$19.00$21.00
$26.00
$29.80$32.10 $33.20
$38.80 $39.40
$22.70
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1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005
Num
ber N
ME
's
$0.00
$5.00
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$ B
illion
s
New Drug Approvals (NMEs)
R&D Spending
Innovation Gap
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The Case for Change to TranslationalMedicine
“Translational Medicine”FDA Critical Path
Declining R&DProductivityPatent ExpirationPatient SafetyGeneric ErosionValue Based Pricing
PharmaDrivers
Life Science &Healthcare
Systems UnderPressure
NOTSUSTAINABLE
BusinessDriversRising Health CostsIncrease in ChronicDiseaseCost of ChronicDiseaseAgeing PopulationsPatient Safety
HealthcareDrivers
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Translational Medicine
Translational Medicine Enablers
Enablers
2. ‘omic Data2. ‘omic Data
4. Clinical Trials4. Clinical Trials
5. Investigators5. Investigators
PotentialBenefits
- Better diagnoses
- Earlier inter-ventions
- More effective therapies
- Improved health outcomes
- Increased cost-effectiveness
1. BioBanking1. BioBanking
3. Electronic Health Records3. Electronic Health Records Bench Bedside
Integrated on a Secure, Scalable, Reliable IT InfrastructureIntegrated on a Secure, Scalable, Reliable IT Infrastructure
Will be detailed out on the following slides
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• BioBankingUK BioBank
Aim• 500,000 people (age 40-69)
Invited to participate• Recruitment Clinic
• Explicit broad consent• Detailed Lifestyle & Health
questionnaire• Physical Measurements &
Sample Collection• Follow up
• Participants health for 20-30 yrs• Information
• Environmental• Lifestyle• Linking to Medical Records &
Biological Samples
Challenges• Build a secure repository
• Protect the confidential medical,health, and lifestyle data collected
• Ensure access to it is restricted toauthorized parties
• Create a single, consistentelectronic record for eachindividual
• Complies with the Health Level 7Version 3 (HL7v3) protocol for theformat, content, and exchange ofdata
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The UK Biobank Resource UK BioBank
UK BiobankAssessment Centre
UK
Biobank Lab &
Archive
NHS Records
GP Health RecordSymptomsDiagnosesReferralsMedicationsProcedures
Hospital RecordsIn & Day PatientsICD-10/ICD-9(Diagnoses)OPCS4 (procedure)Primary DiagnosisMain Operation
Questionnaire e.g.DietCircumstancesFamily HistoryEmploymentSmokingAlcoholLifestyleMedicationsCognitive FunctionHealth
Measurements e.g.HeightWeightRespiratory FunctionSightHearingBlood Pressure
ResultsBiochemistryHaematologyAdvanced testing
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RecruitmentServices
Invitation
Partcipant Liaison & Booking
Assessment Centre
External Data(Clinical)
External Data(Non Clinical)
Middlew
are/Messaging M
anagement/P
seudonymisation
Clinical Repository
LIMS Biological Repository
Data W
arehouses
Health Record Repository
User Portal
Query Tools
Research Com
munity
UK Biobank Core
Systems
Standards Oracle HTB
Overall Systems ArchitectureUK BioBank
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1. BioBankingWindber Research Institute, USA
• Focus on Women’s Health, Cardiovascular Disease, Aging• The most highly annotated BioBank in the US
• Patient annotation (580+data fields)• > 43,000 samples (tissue, serum, lymph nodes)• Image Repository contains:
• Mammograms (film & digital), 4D-ultrasound, PET/CT ,3T MRI,digitized pathology images
• Complementary analysis at WRI• Genomics
• Sequencing, SNP’s, CGH, LOH, expression• Proteomics
• Protein Separation, Protein Identification
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1. BioBankingErasmus MC, Netherlands• Focus on cardiovascular diseases, oncology, pediatrics, genetics and cell biology,
human reproduction, endocrinology, virology and aging
• Highly annotated population/genetics cohorts• ERGO (15.000 cohort)• Generation R (12.000 cohort)• ERF (2.500 cohort)
• Linking genomics data with clinical data
• Image Repository contains:• Mammograms (film & digital), 4D-ultrasound, PET/CT ,3T MRI, digitized pathology and
radiology images
• Complementary research at Erasmus MC• Genomics Sequencing, SNP’s, CGH, LOH, expression• Proteomics Protein Separation, Protein Identification• Forensic Molecular Biology SNP analysis• Functional Genomics Mouse models• Clinical trials CRO efforts
Valk et al, 2004
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2. ‘omic Data HandlingThe Sanger Centre, UK
Challenges• Convert cumbersome & error prone
flat-file based data store into afaster, more flexible databasesystem
• Store and analyse over 400TB ofgenomic data, whilst receiving up2TB of new data per week
• Develop applications faster and in amore integrated way in order toleverage information from thedatabase
• High availability when data is beingtransferred from flat-files to RDBMS
• Web-site is currently taking 8-10million hits per week, and increasing
SolutionTechnical solution of Middleware,Database and RACUnique licensing model to enableunlimited deployment
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3. Electronic Health RecordsStockholm County, Sweden
Every Day• 22,000 people visit a doctor• 7,000 are admitted to hospital• 60 babies are born• 500 undergo an operation• 11 heart attacks are treated• 6,000 are treated by the Public Dental• Services (free service for under 19s)
Stockholms läns landsting
Stockholm County• 1.8 million inhabitants
• Geographical area includes 26municipalities
• 6,500 km2
Melior BMS Swedestar Take Care
Obstetrix ProfDoc Medidoc
InfoMedix Pasett VAS PVS Alfa Biosis
Cambio Sigma m.fl.
EHR16 Different Systems
Islands of DataOracle HTB
Semantic Interoperability EHR
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4. Clinical TrialsQuintiles
Background• Most experienced and largest
contract provider of this tool inthe industry, in production since1996
• Over 320,000 patients and6,130,000 pages have beenprocessed by Quintiles’ datamanagement
• 730+ studies, 555 completed,175 active
• 251 Oracle clinical studies inNorth America
• 305 Oracle clinical outside NorthAmerica
Case Study• Phase III Study
• 10,000 patients• ~1,000 sites in 33 countries• Fast recruitment (18 months)• 3 year project• Hybrid Process – Electronic
Data Capture & Paper
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4. Clinical TrialsTrial Coordination Centre at UMCG, Netherlands
Clinical Trial Directive 001/20/EU
100%100%100%Total
......…..
20%15%11%Data validation5%8%6%
Databasemanagement
12%12%14%Data entry6%2%1%On-site monitoring
22%19%18%Management......…..
6%5%4%Administration......…..
200420032003
Selection criteria• Pharma industry proven• Experience and vision of software
company in health sciences• Scalable• Implementation time• Access, transformation, integration,
distribution• Test environment• Presence of a user group• 21 CFR 11 compliant• EDC; single application• Manage clinical trials
Clinical Trials in an Academic Clinical Research Environment,optimizing cost-effectiveness of clinical research
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4. Clinical TrialsTrial Coordination Centre at UMCG, Netherlands
Benefits• Significant reduction in
workload Paper`based vsRDC (200 pts study)
• Data entry 300 -> 0 hrs• Monitoring 730 -> 730 hrs• Validation 250 -> 100 hrs
• New feature in services(hosting)
• Erasmus MC, UMCG,Xendo
Investment• Significant set-up time
investment:• Implementation and system
validation > 850 hrs• Documentation, modification
and implementing QMS > 400hrs
• Training > 350 hrs• Study initiation
• Maintenance
Future’s Clinical Research -> e-Clinical Research;managing data, not paper
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5. InvestigatorsChallenge: Current Process Does Not Provide CRA WithComplete Investigator Information For Site Selection
CRA 1 conducts astudy with a site
and has poorexperience withinvestigator and
site staff
CRA 2 selects thesame site for a newstudy because theinvestigator meetsspecialty and boardcertification criteria
Investigator’s pastperformance andhistorical informationincludingresponsiveness,adherence to GCPs,etc. are not part ofnew site evaluationcriteria
Problem:Problem:
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5. InvestigatorsAmgen, USA
CUSTOMER PERSPECTIVE“If the protocol is not working, I don’t want towait two months to find out. Now I know withindays or hours if there is a problem”
Hassan Movahhed, Senior Director for ClinicalAffairs
COMPANY OVERVIEW• A biotech company since 1980, Amgen was one of the first
companies to realize the new science’s promise by bringingnovel medicines from lab, to manufacturer plan, to patient.Amgen therapeutics has changed the practice of medicine,helping millions of people in the fight against cancer, kidneydiseases, rheumatoid arthritis and other serious illness. With abroad and deep pipeline of potential medicines, Amgen remainscommitted to advancing sciences to dramatically improvepeople’s lives
CHALLENGES/OPPORTUNITIESLack of comprehensive view of valued customers--physicianinvestigators and prescribersScattered information leads to delay and escalating costsProtocol non-compliance impacts trial qualityManual, labor-intensive, error-prone payments process adds trialcosts and impacts investigators satisfaction
SOLUTIONSOracle Siebel Clinical
RESULTSReduced time spent on costsreconciliation by 80%Reduced monitoring visits by 10-20%due to better data visibilityBetter trial experiences and improvedinvestigator relationshipsReal time trial information leading toearly recognition of issues and quickand better decision makingCuts down wasted payments on workthat is never done
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Adverse Event Reporting/Adverse Event Reporting/PharmacovigilancePharmacovigilance
(Oracle AERS)(Oracle AERS)
Term Classification / Dictionary Management (TMS)Term Classification / Dictionary Management (TMS)
Clinical Integration/Reporting (Life Sciences Data Hub)Clinical Integration/Reporting (Life Sciences Data Hub)
Clinical DataClinical DataManagement SystemManagement System
(Oracle Clinical)(Oracle Clinical)
Clinical Trials Management System (Siebel Clinical)Clinical Trials Management System (Siebel Clinical)
Oracle Life Sciences (OLS) Applications
Remote Data Capture (RDC)Remote Data Capture (RDC)
Clinical A
nalyticsC
linical Analytics
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Integrated Clinical DevelopmentMoving from data compilation to scientific decision
Clinical DataManagement
MedicalTerm
Coding
ReportingTools
Clinical TrialManagement
StatisticalAnalysis
Trial DataCapture
PatientDiaries
Documentand Image
Management
Outsourcedand Managed
Drug Supply
Lab Data
Central View ofInformation
Intranet
SecureInternet
This slide courtesy of IBM BCS
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What is LSH?
• LSH is an application that supports all the necessary functions for:
• Integrating, Loading, Transforming, Analyzing, Viewing, and Reportingon……
Clinical and Non-clinical data, both within and across studies.
• Oracle and SAS tools supported• Designed for regulatory compliance• Designed to be managed by business users• Maximizes reuse and standardization as well as allows for ad-hoc
development
Write Once Validate Once Use Many
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Clinical Integration
Clinical Research Organizations
RDC / CDMS
IVRS
Pharmacoeconomics
LSH
Regulatory CompliantIntegration & Reporting
Environment
CTMS
Financials
Clinical TrialsProgress Review
Data Marts,Reports and
Outputs
BusinessProcess
Automation withWorkflow
Central Labs