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Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

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Page 1: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Pensoft Writing Tool (PWT)

Lyubomir Penev

ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Page 2: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

… and some hundreds millions pages of biodiversity literature in various languages

Page 3: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Estimated ca 1.8 Mio articles per annum, not counting the grey

literature!

Page 4: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

A solution?

Page 5: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Upfront mark up!

Page 6: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

WHAT IS PWT (Pensoft Writing Tool)?

http://pwt.pensoft.net

Page 7: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

PWT is:A collaborative article

authoring and publishing platform for biodiversity

science

Page 8: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

PWT is:The missing link!For firs time ever,

authoring, peer-review, editorial process, publication and

dissemination within a single online collaborative

platform!

Page 9: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Pensoft Writing Tool (PWT)

Collaborative online editing Rich text capabilities Various templates for taxon treatments Identification keys builder

Assembling plates from single figures References import (CrossRef, PubMed Central, etc.)

Species occurrence data import (Darwin Core compliant) Smart citation for figures, tables, references & automated positioning

Taxon treatment

Interactive key

Checklist

Data paper

Template based

manuscript creation

Coauthors

Lead author

ContribitorsMentor, lingustic editor, copy editor, colleague

Page 10: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Workflow

COMMUNITY PEER-REVIEW (OPTIONS FOR PUBLIC AND

OPEN REVIEW)ALL ONLINE!

COLLABORATIVE ARTICLE AUTHORING (PENSOFT WRITING

TOOL)

MANUSCRIPT PUBLISHEDXML TEXT + DATA

Authors, Reviewers, Editors, Mentors, Copyeditors

XML submission

Revisions online

ARTICLESOccurr-

ence dataTaxon namesTaxon treatments

Plazi Wiki COL

Biblio-graphies

Page 11: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 12: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Automated submission

Automated XML submission

Page 13: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Article templates

Page 14: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Classifications

Page 15: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 16: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Add author

Page 17: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 18: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Cybertaxonomic checklist: structure

Page 19: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 20: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Taxon treatment: new species

Page 21: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Taxon treatment: import material data

Page 22: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Taxon treatment: upload of images

Page 23: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Structure of the checklist filed

Page 24: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

External links

Page 25: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

External links

Page 26: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

External links

Page 27: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 28: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 29: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 30: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 31: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Construction of key

Page 32: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Key preview

Page 33: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 34: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Import of checklists through Darwin Core template

Page 35: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT
Page 36: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Time for commercials!

Page 37: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

10-15 good reasons to use PWT

Page 38: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

1.Publishing of single

taxon treatments and nomenclatural acts

NO need to wait to complete a revision

Page 39: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

2.Assembling treatments

into regional Floras/Fauns

Page 40: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

3.Online collaboration at all stages between authors,

editors, publisher

Page 41: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

4.Track change and

commentsRevision history and version comparison

Page 42: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

5.NO Author Guidelines!The tool will guide you!

Page 43: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

6.Manuscripts are

formatted during writingAvoid layout stage, decrease costs and

efforts!

Page 44: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

7.Biological Codes and

DawrinCore compliant

Page 45: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

8.Automated import of

treatments from Scratchpads, EDIT, author

databases

Page 46: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

9.Various modes of

publishing data and multimedia

Page 47: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

9.Automated submission to

journals Published record, citation,

dissemination

Page 48: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

10.Marked up text and data re-used for new projects

Page 49: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

11.Browser-independent

Page 50: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

12.No installation!

Just register and go!

Page 51: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

PWT is free to use!

Page 52: Pensoft Writing Tool (PWT) Lyubomir Penev ViBRANT Tools for DNA taxonomists, 11 June 2013, Brussles ViBRANT

Thank you for your attention!

ViBRANT www.pensoft.net/journals/bdj