“payao” web 2.0 community tagging system to sbml models 2007 sept

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“PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

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Page 1: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

“PAYAO”Web 2.0 Community Tagging System

to SBML models

2007 Sept

Page 2: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

“PAYAO”

• an artificial floating raft where fish congregate

Page 3: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

SBML Models Tagging System

*CellDesigner files

PAYAOSBML Models Tagging System

Manage Models,

Users,Groups

SBML files

Register a model

Store models, Tags, Comments

Login Users

VisitorsModel OwnerAdd Comments

Add/Edit Tags

to the model

View Models withCellDesigner notation

Group A

Group B

Page 4: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model Manager•Register Models•Search Models•Tag references•Popular Keywords

SBML Models Tagging System

Login

User Manager•Add/Delete/Edit User

Group Manager•Create/Delete a group•Add/Delete/Edit User in a group

Model View・View the model・Tag the model

Page 5: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

TOP

Page 6: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model Manage

Page 7: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model View

Page 8: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model View with Tag Marks

Page 9: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Tag

Page 10: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Zoom

Page 11: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model Info

Page 12: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Add Tag to a Specified Area

Page 13: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Tag to a Specified Area

Page 14: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Edit Tag to a Specified Area

Page 15: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

View a Tag

Page 16: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Add Comments to a Tag

Page 17: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

View Comments to a Tag

Page 18: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Switch On Notes Tags Again

Page 19: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Guest View

Page 20: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Model View

Page 21: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Register a Model

• Set the user privilege– sharable– taggable

• You can update the model while retaining the tags.

Page 22: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

Add/Edit a Tag

• PubMed ID• Keyword• OutLink• Free text• Tag set to register• Line size• Color• Date to register• Comments1.Click this pencil shape icon

2.Specify the target

3. Specify the contents of the tag

To Edit a Tag:1. Click on the tag to edit2. Edit the contents

To Add a Tag:

Page 23: “PAYAO” Web 2.0 Community Tagging System to SBML models 2007 Sept

PubMed ID Link