organic chemistry
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Campbell and Reece Chapter 4. ORGANIC CHEMISTRY. Organic Chemistry. study of carbon compounds (most also have hydrogen) range from small molecules (methane has 4 atoms) to very large one (proteins can have thousands of atoms). Major Elements of Life. Carbon Hydrogen Oxygen Nitrogen - PowerPoint PPT PresentationTRANSCRIPT
ORGANIC CHEMISTRY
Campbell and Reece Chapter 4
Organic Chemistry
study of carbon compounds (most also have hydrogen)
range from small molecules (methane has 4 atoms) to very large one (proteins can have thousands of atoms)
Major Elements of Life
Carbon Hydrogen Oxygen Nitrogen Sulfur Phosphorus
Carbon is very Versatile
because C can form 4 covalent bonds these 6 elements can form an almost limitless # organic molecules
VITALISM
Some credit Hippocrates Simply stated: there is a
life force outside physical & chemical laws
Jons Jakob Berzelius
Swedish chemist in early 1800’s
“Organic compounds come from living things” (only )
so inorganic compounds found only in nonliving things
Fredrich WÖhler German chemist 1828: synthesized urea in
lab (normally made in kidney)
Did not convince Vitalists because he 1 reactant he used came from animal blood
Urea
Hermann Kolbe
Student of Wohler Synthesized urea using
only inorganic reactants….. Crushed Vitalism…..sorry
Yoda
Origin of Life on Earth
Stanley Miller, 1953 Designed experiment
trying to re-create conditions on early Earth
Hypothesized : abiotic synthesis of organic compounds possible
Miller’s Experiment
Closed system Flask of water (early seas)
heated Water vapor rose to another
higher chamber containing “atmosphere”
Sparks added (lightening) “rain” formed, cooled material
collected analyzed
Miller’s Experiment
Miller’s Conclusion
Complex organic compounds could form spontaneously under conditions thought to exist on early Earth
Miller’s Results
2008: re-analyzed some samples from Miller’s experiments in the 1950’s
Additional organic compounds identified
Organic Chemistry
Definition changed to: Study of Carbon
Compounds (regardless of origin)
Bonding with Carbon
C has 4 valence e- Bonds possible:
4 single covalent bonds 2 single & 1 double covalent
bond 2 double covalent bonds 1 single & 1 triple covalent
bond
Bonding with Carbon
Carbon Skeletons
Carbon chains form the backbone of most organic molecules
These skeletons can be Straight
Branched
Carbon Skeleton Variation
In rings:
Carbon Skeleton Variation
1 important source of molecular complexity & diversity that characterizes living organisms
Hydrocarbons
C & H Major components of petroleum
products (fossil fuels) When organism dies all water
soluble compounds wash away as it decays.
Fats stay behind hydrocarbons Burn fossil fuels because they
release a large amount of energy
Fossil Fuels
Isomers Cpds with same # and types
of atoms but they are arranged differently
Different structures behave differently
3 types:1. Structural Isomers2. Cis/trans Isomers3. enantiomers
Structural Isomers
Differ in covalent arrangements of their atoms
Molecular formula same, structure different
Structural Isomers
# possibilities for different arrangements of atoms increases dramatically as carbon skeleton increases in size
Cis-trans Isomers
aka geometric isomers Carbons have covalent
bonds with same atoms but these atoms differ in their spatial relationship
Cis-trans Isomers
In cis groups are on same side of Carbon
In trans groups are across from each other
Cis-trans Isomers The difference in cis-trans
can dramatically affect the biological behavior of the molecule
Enantiomers
Isomers that are mirror images of each other
Differ in shape due to having asymmetric carbon
Enantiomers
Usually only 1 is biologically active
Other 1 may have much milder effect
Functional Groups
Portion of molecule that participates in chemical reactions in a characteristic way
7 common, & very important functional groups in organic chemistry
HYDROXYL-OH
Make alcohols Properties:1. Polar2. Can for H-Bonds with
water (help cpd dissolve in water)
CARBONYL-C=O
Makes:1. Ketones: if in middle of
molecule2. Aldehyde: if at end of
molecule Properties:1. can be isomers2. ketoses/aldoses
CARBOXYL-COOH
Makes: organic acids Properties:1. Can donate H+ COO-2. Mostly found in cells in
ionized form (charge of -1) & called a carboxylate ion
3. In amino acids
CARBOXYL
AMINO-NH2
Makes: Amines Properties:1. Acts as a base (can take H+)2. Found in cells in ionized
form with +1 charge3. in amino acids
AMINE
SULFHYDRYL-SH
Makes: thiols Properties:1. 2 –SH can react forming
disulfide bridges These bridges make
hair curly
PHOSPHATE-PO4
Structure: 2 O have (-) charge
Makes: Organic phosphates
Properties: Makes molecule polar (-1)
charge when in middle, (-2) when on end
Can react with water energy
PHOSPHATE
METHYL-CH3
Makes: Methylated compounds
Properties: When attached to DNA, affects
expression of genes Attachment to Testosterone
changes biological effect compared to Estrogen (without methyl group)
METHYL
ADENOSINE TRIPHOSPHATE
ATP Made of adenosine + 3 phosphate groups
When 3 phosphates in series, easy to remove 3rd group with water
Hydrolysis of ATP