my projects at university of oxford e-research centre - nov 2014
DESCRIPTION
Three slides on what my team does at the University of Oxford Research Centre (as of Nov 2014)TRANSCRIPT
Our areas of activity:!• Data capture and curation"• Data (nano)publication"• Data provenance !• Open, community ontologies
and standards"• Semantic web"• Software development"• Training"
Communities we work with/for:! As part of:!• UK, European and international
consortia"• Pre-competitive informatics
public-private partnerships"• Standardization initiatives"Some of the groups we engage with incl.:"
Notes in Lab Books(information for humans)
Spreadsheets and Tables( the compromise)
Facts as RDF statements(information for machines)
Notes and narrative! Spreadsheets and tables! Linked data and data publication!
Notes in Lab Books(information for humans)
Spreadsheets and Tables( the compromise)
Facts as RDF statements(information for machines)
Notes in Lab Books(information for humans)
Spreadsheets and Tables( the compromise)
Facts as RDF statements(information for machines)
Enabling reproducible research and open science, driving science and discoveries "
Increase the level of annotation at the source, tracking provenance and using community standards
eTRIKS – european Translational Information and Knowledge management Services Consortium of academic (Imperial College, CNRS, Un of Luxemburg) and pharmas (Janssen, Merck, AZ, Lilly, Lundbeck, Pfizer, Roche, Sanofi, Bayer, GSK) building a sustainable, open translational research informatics platform
• Nature Publishing Group‘s Scientific Data • BioMedCentral and BGI‘s GigaScience • F1000 Research • Oxford University Press
StatO – Statistics Ontology
CEDAR – Centre for Expanded Data Annotation and Retrieval BioCADDIE – Biomedical and healthCAre Data Discovery and Indexing Ecosystem
COPO – Collaboratively Open Plant Omics Consortium of academic (TGAC, EBI, Oxford, Warwick) building a sustainable, open research informatics platform for plant science