my projects at university of oxford e-research centre - nov 2014

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Our areas of activity: Data capture and curation Data (nano)publication Data provenance Open, community ontologies and standards Semantic web Software development Training Communities we work with/for: As part of: UK, European and international consortia Pre-competitive informatics public-private partnerships Standardization initiatives Some of the groups we engage with incl.:

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Three slides on what my team does at the University of Oxford Research Centre (as of Nov 2014)

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Page 1: My projects at University of Oxford e-Research Centre - Nov 2014

Our areas of activity:!•  Data capture and curation"•  Data (nano)publication"•  Data provenance !•  Open, community ontologies

and standards"•  Semantic web"•  Software development"•  Training"

Communities we work with/for:! As part of:!•  UK, European and international

consortia"•  Pre-competitive informatics

public-private partnerships"•  Standardization initiatives"Some of the groups we engage with incl.:"

Page 2: My projects at University of Oxford e-Research Centre - Nov 2014

Notes in Lab Books(information for humans)

Spreadsheets and Tables( the compromise)

Facts as RDF statements(information for machines)

Notes and narrative! Spreadsheets and tables! Linked data and data publication!

Notes in Lab Books(information for humans)

Spreadsheets and Tables( the compromise)

Facts as RDF statements(information for machines)

Notes in Lab Books(information for humans)

Spreadsheets and Tables( the compromise)

Facts as RDF statements(information for machines)

Enabling reproducible research and open science, driving science and discoveries "

Increase the level of annotation at the source, tracking provenance and using community standards

Page 3: My projects at University of Oxford e-Research Centre - Nov 2014

eTRIKS – european Translational Information and Knowledge management Services Consortium of academic (Imperial College, CNRS, Un of Luxemburg) and pharmas (Janssen, Merck, AZ, Lilly, Lundbeck, Pfizer, Roche, Sanofi, Bayer, GSK) building a sustainable, open translational research informatics platform

•  Nature Publishing Group‘s Scientific Data •  BioMedCentral and BGI‘s GigaScience •  F1000 Research •  Oxford University Press

StatO – Statistics Ontology

CEDAR – Centre for Expanded Data Annotation and Retrieval BioCADDIE – Biomedical and healthCAre Data Discovery and Indexing Ecosystem

COPO – Collaboratively Open Plant Omics Consortium of academic (TGAC, EBI, Oxford, Warwick) building a sustainable, open research informatics platform for plant science