muhammad zeeshan hyder ph.d

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Muhammad Zeeshan Hyder Ph.D. Contact:+92-333-5762293

[email protected], [email protected],

[email protected]

Assistant Professor, Department of Biosciences, COMSATS Institute of

Information Technology (CIIT), Islamabad, Pakistan.

Curriculum Vitae

CONTENTS

Muhammad Zeeshan Hyder Ph.D. ........................................................................................................................ 1

ACADEMIC QUALIFICATIONS: ...................................................................................................................... 2

DISSERTATION/THESIS .................................................................................................................................... 2

DISTINCTIONS: .................................................................................................................................................... 3

EXPERIENCE: ...................................................................................................................................................... 3

CERTIFICATIONS: .............................................................................................................................................. 3

RESEARCH PUBLICATIONS: ........................................................................................................................... 3

RESEARCH PUBLICATIONS IN PROCESS:................................................................................................... 4

PUBLICATIONS IN CONFERENCE PORCEEDINGS: .................................................................................. 4

RESEARCH GRANTS/PROJECTS AWARDED: ............................................................................................. 5

RESEARCH GRANTS/PROJECTS SUBMITTED ............................................................................................ 5

RESEARCH PROJECTS IN COLLEBORATION WITH OTHER ORGANIZATIONS: ............................ 6

OFFICIAL ASSIGNMENTS AS ASSISTANT PROFESSOR BIOSCIENCES CIIT ..................................... 6

Teaching Assignments: Courses Taught .............................................................................................................. 6

Additional Departmental Responsibilities............................................................................................................ 6

THESIS SUPERVISED: ........................................................................................................................................ 7

M.S Bioinformatics: ............................................................................................................................................. 7

B.S Bioinformatics: .............................................................................................................................................. 7

THESIS UNDER SUPERVISION: ....................................................................................................................... 7

Ph.D Biochemistry & Molecular Biology: ........................................................................................................... 8

Ph.D Co-Supervison: ........................................................................................................................................... 8

M.S Biosciences: .................................................................................................................................................. 8

M.S Bioinformatics: ............................................................................................................................................. 8

Bioinformatics Tools Developed: ........................................................................................................................ 8

SEQUENCES SUBMITTED IN GENBANK: ..................................................................................................... 9

Human Papillomavirus Sequences: ..................................................................................................................... 9

Complete Genome Sequences: ............................................................................................................................. 9

Banana bunchy top virus isolate TJ3 Genome: .................................................................................................... 9

Banana bunchy top virus isolate TJ1 Genome: .................................................................................................. 10

Other sequences of Banana bunchy top virus: ................................................................................................... 10

Peste des petits ruminants virus sequences: ....................................................................................................... 12

Rice Genes/Promotors Sequences ...................................................................................................................... 13

RESEARCH TRAININGS .................................................................................................................................. 14

INTERNATIONAL CONFERENCES/WORKSHOP PRESENTATIONS ................................................... 14

RESOURCE PERSON/PRESENTATIONS ...................................................................................................... 14

SEMINARS/WORKSHOPS/CONFERENCES ATTENDED .......................................................................... 15

mailto:[email protected]



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DATE OF BIRTH: 1st December 1978 NIC: 61101-9628865-5

Marital Status: Married

MAILING ADDRESS:

Dr. M. Zeeshan Hyder, Room # 8C, First Floor, BioBlock, Department of Biosciences,

COMSATS Institute of Information Technology (CIIT), Chack. Shehzad Campus, Park Road,

Islamabad-44000, Pakistan.

PERMANENT ADDRESS:

House # 35, Street #8, Muslim Town, Bhara Kahu, Islamabad.

E-MAIL:

[email protected], [email protected], [email protected],

[email protected]

ACADEMIC QUALIFICATIONS:

Ph.D. (Biochemistry) CGPA 3.91/4.00 (83.53%) 1st Div. 2009

PMAS-Arid Agriculture University Rawalpindi, Pakistan.

M.Sc. (Biochemistry) CGPA 3.95/4.00 (81.05%) 1st Div. 2002

University of Arid Agriculture Rawalpindi, Pakistan.

B.Sc. (Botany, Zoology, Chemistry) 427/800 (53.37%) 2nd

Div. 1999

University of the Punjab, Lahore, Pakistan.

B. Ed. 597/900 (66.33%) 1st Div. 2005

Allama Iqbal Open University, Islamabad, Pakistan.

H.S.S.C. (Pre- Medical) 619/1100 (56.27%) 2nd

Div. 1997

Board of Intermediate & Secondary Education, Faisalabad, Pakistan

S.S.C. (Science Group) 677/850 (79.64%) 1st Div. 1994

Board of Intermediate & Secondary Education, Faisalabad, Pakistan.

DISSERTATION/THESIS

Ph.D Thesis title: “SEQUENCING AND GENETIC CHARACTERIZATION OF MAJOR

DNA COMPONENTS OF BANANA BUNCHY TOP VIRUS”. (2009). In Dept. of

Biochemistry, PMAS-Arid Agriculture University Rawalpindi, Pakistan.

M.Sc. Thesis title: “DETERMINATION OF GROUP OF PAKISTANI ISOLATE(S) OF

BANANA BUNCHY TOP VIRUS (BBTV) ON THE BASIS OF VARIATION IN ITS DNA

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COMPONENT-1”. (2002). In Dept of Biochemistry, University of Arid Agriculture

Rawalpindi, Pakistan.

DISTINCTIONS:

1. HEC Indigenous PhD Scholarship (2004-2009).

2. International Research Support Initiative Program (IRSIP) Scholarship. Worked as

visiting scholar at Department of Biochemistry, Biophysics and Molecular Biology,

Iowa State University USA, for six months during (2007).

3. V.C. Talent Scholarship: M.Sc. (Biochemistry) (2001). Department of Biochemistry,

University of Arid Agriculture Rawalpindi.

4. Gold Medalist: M.Sc. (Biochemistry) during Session. (2000-2002). Department of

Biochemistry, University of Arid Agriculture Rawalpindi.

5. Scholarship Middle Standard Examination. (1992).

EXPERIENCE:

Assistant Professor (Contractual/EOL from CIIT) July 02, 2012 to Date Department of Medical Entomology and Disease Vector Control (MEDVC), Health Services

Academy, Prime Minister’s National Health Complex, Islamabad.

Assistant Professor (Permanent/Tenure Track System (TTS))

October 05, 2009 to June 30, 2012

(On Extra Ordinary Leave (EOL) to work at Health Services Academy, Islamabad) Department of Biosciences, COMSATS Institute of Information Technology (CIIT), Islamabad.

Visiting Faculty March 09, 2009 to August, 2009 Department of Biochemistry, PMAS-Arid Agriculture University Rawalpindi

46300-Rawalpindi, Pakistan.

Product Specialist (Medical Diagnostics) Nov, 2002 to Nov, 2004 Med Lab Services, Rawalpindi.

Research Fellow Jun, 2001 to Oct, 2002 Crop Diseases Research Program, Institute of Plant & Environment Protection,

National Agriculture Research Center (NARC), Islamabad.

CERTIFICATIONS:

Medical Transcription 2001 COMSATS Institute of information technology Islamabad.

RESEARCH PUBLICATIONS:

1. Hassan, M., Mehmood, S., Qureshi, M.Z., Rahman, T., Hyder, M.Z., Malik, M.F. and

Gulfraz, M. Simultaneous Saccharification and Fermentation of Sorghum Bicolour

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Grains by Ethanol and Suger Tolerated Saccharomyces cervisiae. (2012). Asian

Journal of Chemistry. 24(3): 1162-1166.

2. Naqvi, S.M.S., Batool, I., Farooq, M.U., Deeba, F., Hyder, M.Z., Mahmood, T.

(2012). Seed grain polyphenol oxidase activities in wheat (Triticum aestivum L.).

Accepted Pakistan Journal of Botany. [MS 11-545].

3. Hyder, M.Z., Shah, S.H, Hameed, S., Naqvi, S.M.S. (2011). Evidence of

recombination in Banana bunchy top virus genome. Infect. Genet. Evol. 11(6): pages

1293-1300.

4. Naqvi, S.M.S., Raza, S.Q., Hyder, M.Z., Ozalp, C.V., Oktem, H.A, and Yucel, M.

(2009) Subcellular distribution of two salt-induced peptides in roots of Oryza Sativa L.

var Nona bokra. Afr. J. Biotech. Vol. 8(18): pages 4613-4617.

5. Yasmin, T., Mahmood, T., Hyder, M. Z., Akbar, S. and Naqvi, S. M.S. (2008).

Cloning, Sequencing and In Silico analysis of Germin-like Protein Gene 1 promoter

from Oryza Sativa L. ssp. Indica. Pakistan Journal of Botany, Vol. 40(4): pages 1627-

1634.

6. Mahmood, T., Hyder, M. Z. and Naqvi, S.M.S. (2007). Cloning and sequence analysis

of germin-like protein gene 2 promoter from Oryza sativa L. ssp. Indica. DNA

Sequence, Vol:18(1), pages 26 - 32

7. Hyder, M. Z. S. Raza, S.Q., Hameed, S. Khalid, S. and Naqvi. S.M.S. (2007).

Phylogenetic relationship of TJ1 isolate of Banana bunchy top virus from Pakistan by

DNA-R sequence analysis. Canadian Journal of Plant Pathology. Vol:29(1), pages, 63-

68.

RESEARCH PUBLICATIONS IN PROCESS:

1. Deeba, F., Hyder, M.Z., Farooq, M.U., Naqvi, S.M.S. (2012) Multiplex PCR Assay

for Identification of Commonly Used Disarmed Agrobacterium tumefaciens Strains.

[Submitted to Molecular Biotechnology [MOBI-D-11-00319].

2. Sundus, F., Farukh, M., Ali, M., Imran, M., Naqvi, S.M.S. and Hyder, M.Z. (2012).

Role of Recombination in Genetic Diversity of Banana bunchy top virus Population.

[under process].

3. Abdullah, Qasim, M., Parveen, S., Murtaza, S., Javed, Q., Sami, A., Naqvi, S.M.S.,

Hussain, S., Mehmood, S. and Hyder, M.Z. (2012). Phyloglenetics reveals the

presence of Human Papillomaviruses High Risk type 16 from female patients in

Pakistan. [under process].

PUBLICATIONS IN CONFERENCE PORCEEDINGS:

1. Sundus, F., Farukh, M., Ali, M., Imran, M., Naqvi, S.M.S. and Hyder, M.Z. (2012).

Role of Recombination in Genetic Diversity of Banana bunchy top virus Population.

11th International Conference on Molecular Epidemiology and Evolutionary Genetics

of Infectious Diseases (MEEGID XI 2012). Held at Loyola University New Orleans,

USA. During October 30-November 2, 2012.

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2. Hyder, M. Z. and Naqvi. S.M.S. (2008). Sequence Analysis of Banana bunchy top

virus DNA-U3 from Pakistan. 9th

Biennial Pakistan Society of Biochemistry and

Molecular Biology Conference, ADVANCES IN BIOCHEMISTRY AND

MOLECULAR BIOLOGY. Held at Dept. of Biochemistry, Pir Mehr Ali Shah, Arid

Agriculture Rawalpindi. During December 17-20. 2008.

3. Hyder, M. Z., S. Raza, S.Q., Hameed, S. Khalid, S. and Naqvi. S.M.S. (2006).

Molecular Characterization of a Bnana bunchy top virus Isolate From Pakistan Based

on DNA-1. 1st International Egyptian-Jordanian Conference, Biotechnology and

Sustainable Development: Current Status and Future Scenarios. Held at National

Research Centre, Cairo, Egypt. December 11 to December 14, 2006.

4. Hyder, M. Z., S. Raza, S.Q., Mahmood, T. and Naqvi. S.M.S. (2005). Cloning of

BBTV-1 AND –3 of Pakistani Isolate of Banana Bunchy Top Virus. 8th

Biennial

Conference, “Emerging Trends in Biochemistry and Molecular Biology. Pakistan

Society for Biochemistry and Molecular Biology. March 7-9, 2005.

5. Naqvi, S.M.S., Hyder, M.Z. and Khalid, S. (2003). Amplification and Cloning of

BBTV DNA-1 of Pakistani Isolate of Banana Bunchy Top Virus. 7th

International

Conference, “Trends in Biochemistry and Molecular Biology”. Pakistan Society for

Biochemistry and Molecular Biology. April 2 -5, 2003.

RESEARCH GRANTS/PROJECTS AWARDED:

1. “Study of Dynamics of Major Transcripts of Banana Bunchy Top Virus Genome

by Real-time PCR” Awarded under NRPU by Higher Education Commission,

Pakistan. Duration. June 2011-June 2014. Funded amount Rs. 3.5 Million.

2. “Proteome Alterations associated with Banana bunchy top virus infection in

banana”. Awarded by Pakistan Science Foundation. Duration June 2011-June 2013.

Funded amount Rs. 2.3 Million.

3. “Cloning, Sequencing and Phylogenetic analysis of Cotton leaf curl virus”

Awarded under CRGP by COMSATS Institute of Information Technology,

Islamabad, Pakistan. Funded amount Rs. 0.2 Million.

4. “Development of Plant DNA Isolation Kit” Awarded under Startup Research Grand

for IPFP by Higher Education Commission, Pakistan. Duration June 2010 to

September 2011. Funded amount Rs. 0.49 Million.

RESEARCH GRANTS/PROJECTS SUBMITTED

1. “Use of RNAi to develop resistance in Banana against Banana bunchy top virus

infection”. Submitted to ISESCO-COMSTECH Joint Research Grants Program.

Duration 2 years. Funded requested U.S.$ 10,000.00.

2. “Role of Asymptomatic Malaria Infections in Transmission of Malaria in

Pakistan”. Submitted to Malaria Eradication Scientific Alliance (MESA) as Co. P.I.

Duration 2 Years. Funds requested U.S.$ 199,650.00.

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RESEARCH PROJECTS IN COLLEBORATION WITH OTHER ORGANIZATIONS:

1. “Optimization of DNA Extraction Methods for PCR Amplification of Hepatitis B

Virus” In collaboration with Dr. Sajid Mehmood from Department of Biochemistry and Molecular

Biology, Nawaz Sharif Medical College, University of Gujrat, Gujrat, Pakistan.

2. “Development of an Economical PCR Assay for the Screening of Human

Papillomaviruses in female AIDS patients in Pakistan”

In collaboration with Miss Hafsa Aziz from NORI Hospital, Islamabad and Dr. Fozia

from PPTCT, MCH at PIMS Hospital Islamabad.

3. “Development of an PCR Assay for Universal Detection and Genotyping of

Dengue Virus in Pakistan”

In collaboration with Dr. Sajid Mehmood from Department of Biochemistry and Molecular

Biology, Nawaz Sharif Medical College, University of Gujrat, Gujrat, Pakistan and

Miss Hafsa Aziz from NORI Hospital, Islamabad.

OFFICIAL ASSIGNMENTS AS ASSISTANT PROFESSOR

BIOSCIENCES CIIT

Teaching Assignments: Courses Taught

Fall 2009 BS Course Bio 132 (Principals of Biochemistry) 4(3, 1) Sharing

BS Course BSC 203 (Introduction to Biochemistry) 4(3,1) Sharing

BS Course BIO251 (Microbiology and Immunology) 4(3,1) Sharing

Spring 2010 BS Course BIO 346 (Introduction to Genomics) 3(3,0)

BS Course BSC 205 (Introduction to Molecular Biology) 3(3,0) Sharing

Fall 2010 BS Course BIO 346 (Introduction to Genomics) 3(3,0)

BS Course BIO242 (Introduction to Genomics) 3(3,0)

MS/PhD Course BIO704 Trends in Genomics 4(4,0)


BS Course BIO242 (Introduction to Genomics) 3(3,0)

BS Course BIO130 (Cell Biology) Sharing

Fall 2011 MS/PhD Course BIO704 (Trends in Genomics) 4(4,0)

BS Course BSC303 (Immunology) 2(2-1)


MS/PhD Course BIO704 Trends in Genomics 4(4,0)

Additional Departmental Responsibilities

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Incharge Student Affairs (Biosciences) 2011 to Jun 2012

BS Student Counselor 2011 to June 2012

Incharge Bio-store 2010 to Feb 2012

Incharge Bio-labs 2010 to Feb 2012

THESIS SUPERVISED:

M.S Bioinformatics:

1. Faiza Sundus (FA10-RBI-003). Title of M.S dissertation “Role of Recombination

and Gene Conversion in the Evolution of Banana Bunchy Top Virus Genome”.

Session fall 2010 to fall 2012.

B.S Bioinformatics:

1. Nazish Arshad (SP08-BSB-031). Recombination Analysis of Banana Bunchy Top

Virus Genomes. (2012). Department of Biosciences, COMSATS Institute of

Information Technology, Islamabad.

2. Saba Asim (SP08-BSB-038) and Samia Tariq (SP08-BSB-041). Functional Insight

through in-silico Analysis of Banana Bunchy Top Virus Genome. (2012). Department of Biosciences, COMSATS Institute of Information Technology,

Islamabad.

3. Samar Hayat Khan Tareen (FA07-BSB-028). PrimEx: An Exhaustive search tool

for designing Universal Primers from diverse DNA sequences. (2011). Department

of Biosciences, COMSATS Institute of Information Technology, Islamabad.

4. Shahid Ali (FA06-BSB-028) and Muhammad Fakhar (FA06-BSB-015). Analysis of

Reassortment in Banana bunchy top virus genomes. (2011). Department of

Biosciences, COMSATS Institute of Information Technology, Islamabad.

5. Farhan Mahmood (SP07-BSB-011), Maria Razzaq (SP07-BSB-018) and Mehreen

Ishfaq (SP07-BSB-020). Evolutionary insight into the Germins and GLPs genes

family in Oryza sativa and Arabidopsis thaliana. (2011). Department of Biosciences,

COMSATS Institute of Information Technology, Islamabad.

6. Saad Raza (FA06-BSB-022) and Rashid Hussain (FA06-BSB-021). Phylogenetic

analysis of major proteins coding genes of Geminiviridae: A single stranded DNA

virus family. (2010). Department of Biosciences, COMSATS Institute of Information

Technology, Islamabad.

THESIS UNDER SUPERVISION:

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Ph.D Biochemistry & Molecular Biology:

1. Muhammd Imran (FA11-PBS-004). Session fall 2011 to fall 2016. Tentative title of

PhD dissertation: “Expression Profiling of Major Transcripts of Banana Bunchy Top

Virus Genome by Real-time PCR”

2. Abdullah (SP12-PBS-004). Session spring 2012 to fall 2017. Tentative title of PhD

dissertation: “Molecular Characterization of Human Papillomaviruses in Pakistan”.

3. Muhammad Shafiq (SP12-PBS-002). Session spring 2012 to fall 2017. Tentative title

of PhD dissertation: “Molecular Characterization of Human Papillomaviruses in

Pakistan”.

Ph.D Co-Supervison:

1. Nadia Faqeer (96-Agr-U-5023). Session 2010-2014. Title “Genetic Diversity

Analysis of Date Palm Cultivars of Pakistan” at National University of Agricultural

Science, NARC, Islamabad.

2. Shakir Ullah Khan (2001 Agr-u-7434). Session 2010-2014. Title “Varietal

Identification of Apricot Cultivars in Gilgit Baltistan Based on Morphological and

Molecular Markers” at National University of Agricultural Science, NARC,

Islamabad.

M.S Biosciences:

1. Muhammad Ali (FA10-RBS-010). Session fall 2010 to fall 2012. Tentative title of

M.S dissertation “Determination of DNA Methylation patterns of Major DNA Components of

Banana Bunchy Top Virus Genome”.

M.S Bioinformatics:

1. Muhammad Farrukh (FA10-RBI-002). Session fall 2010 to fall 2012. Tentative title

of M.S dissertation “An integrated software for developing Universal Primers from diverse

DNA sequences”.

Bioinformatics Tools Developed:

1. PrimEx: An Exhaustive search tool for designing Universal Primers from diverse

DNA sequences.

Samar Hayat Khan Tareen and M. Zeeshan Hyder (2011).

PrimeEx is an exhaustive search tool which can alignment-independently find

conserved regions in diverse DNA sequences. After initially finding small regions of

higher similarity this program expands the original search providing good length of

conserved regions. These conserved regions are then further explored to make

universal PCR primers. This program is very well for large and long DNA sequences

from a diverse source which are difficult to align by alignment tools and may have

repeat regions making multiple sequence alignment difficult for selecting consensus of

conserved regions ideal for universal primers.

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2. REPaiG (Regulatory Elements Predictor and image Generator). Farhan Mahmood, Maria Razzaq, Mehreen Ishfaq and M. Zeeshan Hyder (2010).

Predict different regulatory elements present in promoter sequence and graphically

represent this data along the length of sequence. This greatly enhances visualization

and the spatial organization of regulatory elements along the length of DNA sequence.

The database of regulatory elements can be developed into this software or it can take

the output of SIGNAL SCAN. it. REPAIG is designed in Visual Studio 2010 using C#

as a programing language and in NET framework 4. It can be run on Windows

operating system.

3. SimIdent-RANGE (Similarity and Identity RANGE). Nazish Arshad Chudhary, M. Junaid Naeem and M. Zeeshan Hyder (2010).

Calculates the range of nucleotides/amino acids similarity and identity among the

groups of large number of sequences. This application aids the analysis of output

obtained from MatGAT which is a commonly used program for sequence analysis and

finding similarities and identities between DNA as well as protein sequences. It lets

the user open a Microsoft Excel file containing output from MatGAT and asks the user

either to select the group names they want to particularly analyze or make a selection

of the individual genes/proteins they want to analyze. The program is developed in

JAVA and can run on Windows operating system.

SEQUENCES SUBMITTED IN GENBANK:

Core Nucleotide Sequences: 60

Human Papillomavirus Sequences:

1. Abdullah, Qasim, M., Naqvi, S.M.S., Mehmood, S. and Hyder, M.Z. (2012).

Human Papillomavirus Type 16 Isolate Pak01 Partial E1 gene. (Accession #

JX073135).

Complete Genome Sequences:

Banana bunchy top virus isolate TJ3 Genome:

2. Ali,M., Rozeena, Aish,M., Hussain,M.I., Mehmood,S., Soomro,M.H., Naqvi,

S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-R (encoding

master replication initiation protein (MRep)) of TJ3, isolated in 2011 from

Tandojam, Pakistan. (Accession # JX170762).

3. Ali,M., Rozeena, Aish,M., Hussain,M.I., Mehmood,S., Soomro,M.H.,

Naqvi,S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-U3 of

TJ3, isolated in 2011 from Tandojam, Pakistan. (Accession # JX170764).


Naqvi,S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-S

(encoding coat protein (CP)) of TJ3, isolated in 2011 from Tandojam,

Pakistan. (Accession # JX170763).

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5. Rozeena, Ali,M., Aish,M., Hussain,M.I., Mehmood,S., Soomro,M.H.,

Naqvi,S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-M

(encoding movement protein (MP)) of TJ3, isolated in 2011 from Tandojam,



Naqvi,S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-C

(encoding cell-cycle link protein (Clink)) of TJ3, isolated in 2011 from



Naqvi,S.M.S. and Hyder, M.Z. (2012). Banana bunchy top virus DNA-N

(encoding nuclear-shuttle protein (NSP)) of TJ3, isolated in 2011 from


Banana bunchy top virus isolate TJ1 Genome:

8. Hyder, M.Z. Raza, S.Q., Hameed, S., Khalid, S. and Naqvi, S.M.S. (2005).

Banana Bunchy Top Virus DNA-1 (Replicase gene). (Accession #

AY996562).

9. Hyder, M.Z., Shah, S.H., and Naqvi, S.M.S. (2009). Banana bunchy top virus

DNA-U3, TJ1 isolate, complete sequence. (Accession# GQ214699).

10. Naqvi, S.M.S. and Hyder, M.Z. (2007). Banana bunchy top virus isolate TJ1

segment DNA-S (Coat protein gene) complete cds. (Accession # EF593169)


segment DNA-M movement protein gene. (Accession # EU095948)

12. Naqvi, S.M.S. and Hyder, M.Z. (2007). Banana bunchy top virus cell cycle

link protein gene, complete cds. (Accession # EF520722)


segment DNA-N coding for Nuclear-shuttle protein. (Accession # EF529519).

Other sequences of Banana bunchy top virus:



(encoding movement protein (MP)) of BS1, isolated in 2007 from Bhitshah,




(encoding movement protein (MP)) of NS1, isolated in 2007 from Nawabshah,




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(encoding movement protein (MP)) of HD1, isolated in 2007 from Hyderabad,


17. Hyder, M.Z., Thornburg, R.W. and Naqvi, S.M.S. (2009). Banana bunchy top

virus DNA-R, GH1 isolate, complete sequence. (Accession # FJ859722).


virus DNA-R, KP1 isolate, complete sequence. (Accession # FJ859723).


virus DNA-R, KP2 isolate, complete sequence. (Accession # FJ859724).


virus DNA-R, TA1 isolate, complete sequence. (Accession # FJ859725).


virus DNA-R, TA2 isolate, complete sequence. (Accession # FJ859726).


virus DNA-R, BS1 isolate, complete sequence. (Accession # FJ859727).


virus DNA-R, BS2 isolate, complete sequence. (Accession # FJ859728).


virus DNA-R, MT1 isolate, complete sequence. (Accession # FJ859729).


virus DNA-R, MT2 isolate, complete sequence. (Accession # FJ859730).


virus DNA-R, NS1 isolate, complete sequence. (Accession # FJ859731).


virus DNA-R, JS1 isolate, complete sequence. (Accession # FJ859732).


virus DNA-R, HD1 isolate, complete sequence. (Accession # FJ859733).


virus DNA-R, HD2 isolate, complete sequence. (Accession # FJ859734).


virus DNA-S, GH1 isolate, complete sequence. (Accession # FJ859735).


virus DNA-S, KP1 isolate, complete sequence. (Accession # FJ859736).


virus DNA-S, KP2 isolate, complete sequence. (Accession # FJ859737).


virus DNA-S, TA1 isolate, complete sequence. (Accession # FJ859738).

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virus DNA-S, TA2 isolate, complete sequence. (Accession # FJ859739).


virus DNA-S, BS1 isolate, complete sequence. (Accession # FJ859740).


virus DNA-S, BS2 isolate, complete sequence. (Accession # FJ859741).


virus DNA-S, MT1 isolate, complete sequence. (Accession # FJ859742).


virus DNA-S, MT2 isolate, complete sequence. (Accession # FJ859743).


virus DNA-S, NS1 isolate, complete sequence. (Accession # FJ859744).


virus DNA-S, JS1 isolate, complete sequence. (Accession # FJ859745).


virus DNA-S, HD1 isolate, complete sequence. (Accession # FJ859746).


virus DNA-S, HD2 isolate, complete sequence. (Accession # FJ859747).

43. Shah, S.H., Hyder, M.Z. and Naqvi, S.M.S. (2009). Banana bunchy top virus

DNA-U3, GH1 isolate, complete sequence. (Accession # FJ859748).


DNA-U3, JS1 isolate, complete sequence. (Accession # FJ859749).


DNA-U3, HD1 isolate, complete sequence. (Accession # FJ859750).

46. Mahmood, T., Yasmin, T., Hyder, M.Z. and Naqvi, S.M.S. (2008). Oryza

sativa L. cv. Nona bokra (indica cultivar-group) RGLP1 gene promoter region

(Accession # EU742684).

47. Raza, S.Q., Hyder, M.Z., Hameed, S., Khalid, S. and Naqvi, S.M.S. (2005).

Banana bunchy top virus DNA-U3, KHI isolate, complete sequence.

(Accession # AY996563).

Peste des petits ruminants virus sequences:

48. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Irshad, H., Ullah, A. and Hussain,

M. (2010). Peste des petits ruminants virus isolate PAK-KP1-06-NARC3 from

Pakistan, F protein (fusion protein)gene, partial cds. (Accession# GU980858).

49. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Irshad, H., Afzal, M. and Hameed,

A. (2010). Peste des petits ruminants virus isolate PAK-Suk1-06-NARC7

from Pakistan, F protein (fusion protein)gene, partial cds. (Accession#

GU980859).

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50. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Afzal, M., Hussain, M. and

Hameed, A. (2010). Peste des petits ruminants virus isolate PAK-Mzd1-07-

NARC6 from Pakistan, F protein (fusion protein)gene, partial cds.

(Accession# GU980860).

51. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Hameed, A., Iqbal, S.A., and Latif,

A. (2010). Peste des petits ruminants virus isolate PAK-FJg-07-NARC4 from

Pakistan, F protein (fusion protein) gene, partial cds. (Accession# GU980861).

52. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Afzal, M., and Naqvi, S.M.S.

(2010). Peste des petits ruminants virus isolate PAK-Ict-06-NARC2 from


53. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Afzal, M., Hameed, A., Hussain, M.

Iqbal, S.A., and Latif, A (2010). Peste des petits ruminants virus isolate PAK-

Att-07-NARC5 from Pakistan, F protein (fusion protein) gene, partial cds.


54. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Afzal, M., Hussain, M. Shah, S.H.,

Naqvi, S.M.S. and Hameed, A. (2010). Peste des petits ruminants virus isolate

PAK-HPr-05-NARC11 from Pakistan, F protein (fusion protein) gene, partial

cds. (Accession# GU980864).

55. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Ullah, A., Irshad, H. and Afzal, M.

(2010). Peste des petits ruminants virus isolate PAK-Veh-05-NARC1 from


56. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Irshad,H., Latif, A., and Hameed, A.

(2010). Peste des petits ruminants virus isolate PAK-Khb-08-NARC9 from


57. Zahur,A.B., Hyder, M.Z., Farooq, M.S., Afzal, M., Irshad, H., Hussain, M.

and Hameed, A. (2010). Peste des petits ruminants virus isolate PAK-Bpr-07-

NARC10 from Pakistan, F protein (fusion protein) gene, partial cds.


58. Zahur, A.B., Hyder, M.Z., Farooq, M.S., Shah, S., H., Hussain, M. and

Hameed, A. (2010). Peste des petits ruminants virus isolate PAK-Bhk-07-

NARC8 from Pakistan, F protein (fusion protein) gene, partial cds.


Rice Genes/Promotors Sequences:

59. Mahmood, T., Hyder, M.Z. and Naqvi, S.M.S., (2007) Homolog of osRGLP2

in Oryza sativa ssp. indica cv. Nonabokra structural gene complete cds.

(Accession # EU095949)

60. Mahmood, T., Naqvi, S.M.S. and Hyder, M.Z. (2006) Oryza sativa (indica

cultivar-group) RGLP2 gene, promoter region and 5' UTR. (Accession#

DQ414400).

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RESEARCH TRAININGS

1. HEC, COMSTECH, NIGAB-NARC, Thematic Workshop in Frontier Technologies on

“RECENT ADVANCES IN PLANT ABIOTIC STREES TOLERANCE”. Held at

COMSTECH Secretariat, Islamabad, Pakistan. October 9-11, 2009.

2. Interactive Thematic Workshop “BIOFERTILIZERS TECHNOLGY: DAWN OF

SUSTAINABLE AGRICULTURE” Held at COMSTECH Secretariat, Islamabad,

Pakistan. January 22-28, 2008.

3. Research Training at the Department of Biochemistry, Biophysics and Molecular

Biology, Iowa State University, USA. May 2007 to November 2007.

4. Interactive Thematic Workshop “THE USE OF RNAi IN THERAPEUTICS” Held at

COMSTECH Secretariat, Islamabad, Pakistan. November 25 to December 08, 2006.

INTERNATIONAL CONFERENCES/WORKSHOP PRESENTATIONS

1. Oral-Presentation (Accepted): ELSEVIER organized Molecular Epidemiology and

Evolutionary Genetics of Infectious Diseases (MEEGID) congress’s conference entitled “11th

International Conference on Molecular Epidemiology and Evolutionary Genetics of Infectious

Diseases (MEEGID XI 2012)” at New Orleans, Louisiana, USA, October 30-November 2,

2012.

2. Invited Guest: International Conference “Environmental Risk Assessment of GE

Plants” during April 15-17 2012 and a “Discussion on Biosafety Element of the

Pakistan Strategy Support Program” organized by Center of Environmental Risk

Assessment (CERA), USA, in Dhaka, Bangladesh. April 15-18, 2012.

3. Oral-Presentation: Hyder, M. Z., S. Raza, S.Q., Hameed, S. Khalid, S. and Naqvi.

S.M.S. (2006). Molecular Characterization of a Bnana bunchy top virus Isolate From

Pakistan Based on DNA-1. 1st International Egyptian-Jordanian Conference,

Biotechnology and Sustainable Development: Current Status and Future Scenarios.

Held at National Research Centre, Cairo, Egypt. December 11 to December 14, 2006.

RESOURCE PERSON/PRESENTATIONS “Real Time PCR and Disease Diagnostics” in 2

nd HEC/PMAS-AAU Workshop on Real Time PCR held at

Department of Biochemistry, PMAS- Arid Agriculture University Rawalpindi, Pakistan. September 04- 07, 2012

“METHOD VALIDATION” in three days “NATIONAL TRAINING WORKSHOP ON ANALYTICAL

LABORATORY MANAGEMENT” Held at Dept. of Biochemistry & Molecular Biology, Nawaz Sharif Medical

College, University of Gujrat. June 23-25, 2010.

“REAL TIME PCR CHEMISTRIES” in four days “TRAINING WORKSHOP ON REAL TIME PCR” Held at

Dept. of Biochemistry, Pir Mehr Ali Shah, Arid Agriculture Rawalpindi. June 8-11, 2010.

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“SEQUENCE ANALYSIS OF BANANA BUNCHY TOP VIRUS DNA-U3 FROM PAKISTAN”

9th

Biennial Pakistan Society of Biochemistry and Molecular Biology Conference, “ADVANCES IN

BIOCHEMISTRY AND MOLECULAR BIOLOGY”. Held at Dept. of Biochemistry, Pir Mehr Ali Shah, Arid


“MOLECULAR CHARACTERIZATION OF A BNANA BUNCHY TOP VIRUS ISOLATE FROM

PAKISTAN BASED ON DNA-1”

1st International Egyptian-Jordanian Conference, Biotechnology and Sustainable Development: Current Status

and Future Scenarios.

Held at National Research Centre, Cairo, Egypt.

December 11 to December 14, 2006

“RNAi SUPPRESSION”

Interactive Thematic Workshop on “The Use of RNAi In Therapeutics”

Held at COMSTECH Secretariat, Islamabad, Pakistan.

November 25 to December 08, 2006

“DNA SEQUENCING”

Workshop on “Plant Molecular Biology/Biotechnology”

Held at Department of Biochemistry. University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan

January 30–February 04, 2006

“A NEW TOOL IN THE ARSENAL FOR GENE SILENCING: RNAi”

Seminar Series, University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan

September 29, 2005

“MOLECULAR BIOLOGY, A PRACTICAL APPROACH”

Mohammad Ali Jinnah University, Islamabad Campus. Under the program of Society of GENIX, Society of

Bioinformatics.

May 09, 2005

“CLONING OF BBTV-1 AND –3 OF PAKISTANI ISOLATE OF BANANA BUNCHY TOP VIRUS.”

8th

Biennial Conference, “Emerging Trends in Biochemistry and Molecular Biology”.

Pakistan Society for Biochemistry and Molecular Biology.

March 7-9, 2005.

“AMPLIFICATION AND CLONING OF BBTV DNA-1 OF PAKISTANI ISOLATE OF BANANA BUNCHY

TOP VIRUS”

7th

International Conference, “Trends in Biochemistry and Molecular Biology”.

Pakistan Society for Biochemistry and Molecular Biology.

April 2 -5, 2003.

SEMINARS/WORKSHOPS/CONFERENCES ATTENDED

9th

Biennial Pakistan Society of Biochemistry and Molecular Biology Conference, “ADVANCES IN

BIOCHEMISTRY AND MOLECULAR BIOLOGY”. Held at Dept. of Biochemistry, Pir Mehr Ali Shah, Arid


SEMINAR SERIES FALL 2007, DEPT. OF BIOCHEMISTRY, BIOPHYSICS AND MOLECULAR

BIOLOGY

“DOVELOPMENT AND FUNCTION OF THE ORNAMENTAL TOBACCO NECTARY” BY Dr. Robert

Thornburg

Held at Molecular Biology Bldg. Iowa State University, USA.

September 26, 2007


BIOLOGY

“STRUCTURE OF THE PROTEIN-DNA INTERACTIONS WITHIN CHROMATIN” BY Dr. Jeff Hayes


September 26, 2007

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BIOLOGY

“GENETIC ENGINEERED VEGATABLE OILS FOR BIO-MATERIALS AND BIO-FUELS:WHAT? AND

WHEN?” BY Dr. Sten Stymne


September 28, 2007


BIOLOGY

“MITOCHONDRIAL DYSFUNCTION AND DISEASE: LINKS WITH PROTEIN IMPORT AND

MITOCHONDRIAL ASSEMBLY” BY Dr. Carla Koehler


September 17, 2007


BIOLOGY

“T CELL SIGNALING; INSIGHTS FROM PROTEIN NMR SPECTROSCOPY” BY Dr. Amy Andreotti


September 06, 2007

INTERNATIONAL SYMPOSIUM ON “CHARACTERIZATION AND MANAGEMENT OF EMERGING

VIRAL DISEASES IN THE DEVELOPING WORLD”

Held at National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan.

November 20-22, 2006

INTERNATIONAL TRAINING WORKSHOP ON “BIOMOLECULAR SEPARATION TECHNIQUES”

Held at Department of Biochemistry, University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan

July 10-15, 2006.

INTERNATIONAL CONFERENCE ON “BIOTECHNOLOGY: SHAPING FUTURE AGRICULTURE”

Held at University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan

June 20-21, 2006.

LECTURE ON “LATEST DEVELOPMENT IN THE REAL TIME PCR”

Held at Burney Auditorium, National Institute of Health, Islamabad.

February 28, 2006.

INTERNAL SEMINAR ON “STRENGTHENING SCIENCE IN AFRICA”

Held at Pakistan Academy of Sciences, Islamabad.

February 19-20, 2006

WORKSHOP ON “PLANT MOLECULAR BIOLOGY/BIOTECHNOLOGY”


January 30–February 04, 2006.

WORKSHOP ON “MOLECULAR MODELING AND DOCKING”


January 23–27, 2006.

SEMINAR ON “USE OF THERAPEUTIC AGENT AND DIAGNOSTIC KIT”.

Held at Department of Biochemistry. University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan.

February 14-16, 2005.

SERIES OF SEMINARS

Pakistan Academy of Sciences, Islamabad.

During the year 2003 – 2006

8th

BIENNIAL CONFERENCE, “Emerging Trends in Biochemistry and Molecular Biology”. Pakistan Society

for Biochemistry and Molecular Biology.

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Held at Department of Biochemistry, University of Karachi, Karachi.

March 7-9, 2005.

7th

INTERNATIONAL CONFERENCE, “Trends in Biochemistry and Molecular Biology”. Pakistan Society for

Biochemistry and Molecular Biology.

Held at School of Biological Sciences, Punjab University, Lahore.

April 2-5, 2003.

23rd

PAKISTAN CONGRESS OF ZOOLOGY (INTERNATIONAL).

Held at Department of Biological Sciences, University of Arid Agriculture Rawalpindi, Rawalpindi, Pakistan.

March 3-5, 2003.

3rd NATIONAL CONFERENCE OF PLANT PATHOLOGY,

Held at National Agricultural Research Center (NARC), Islamabad

October 1-3, 2001.

muhammad zeeshan hyder ph.d

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