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System will preferentially populate the lowest energy states Monte Carlo Quantity of interest:

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Page 1: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)

System will preferentially populate the lowest energy states

Monte Carlo

Quantity of interest:

Page 2: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 3: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 4: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)

Metropolis Monte Carlo

© G. Matthias Ullmann

• Rigorous canonical sampling• Produces Boltzmann weighted populations:

• information about equilibrium states• easy to implement

Page 5: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 6: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)

Monte Carlo Pros/Cons

Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)

Pros:• does not require a continuous energy function (as in MD)• number of particles can easily vary (very hard in MD)

Cons:• highly correlated movements are hard to simulate, leads to a poor sampling of large-scale changes

Page 7: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 8: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 9: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 10: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 11: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 12: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 13: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 14: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 15: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 16: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 17: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 18: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)

A Simple “Biased” Monte Carlo Conformational Search

Page 19: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 20: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 21: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 22: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 23: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 24: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 25: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 26: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 27: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
Page 28: Monte Carlo - Washington University in St. Louis · 2014. 4. 1. · Monte Carlo Pros/Cons Simulation involves random trial steps. (Analogy with gambling, hence the name Monte Carlo)
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