molecular biomarkers to individualise treatment: …...treatment in a restricted biomarker-defined...

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MJA Volume 190 Number 11 1 June 2009 631 FROM BENCH TO BEDSIDE he development of rapid high-throughput technologies to analyse DNA, RNA and protein has led to a paradigm shift in our understanding of the molecular basis of disease. Molecules that can be used to differentiate between normal and abnormal biological processes or predict treatment responses are termed “molecular biomarkers” (Box 1). 1 Examples include DNA sequence mutations, epigenetic changes, and levels of messenger RNA or protein expression that are associated with a patient’s risk of disease events, survival time or response to treatment. Use of molecular biomarkers to supplement or replace conventional clinicopathological factors has the potential to transform the practice of medicine by creating new opportunities for developing and tailoring treatments to individual patients. The clinical value of some molecular biomarkers has been established by trials that have demonstrated that biomarker-guided treatment strategies improve patient outcomes. For example, randomised controlled trials (RCTs) have provided evidence about the value of measuring oestrogen receptor (ER) status in women with breast cancer to identify those who will benefit from targeted treatment with anti-oestrogen therapy and those who will not. However, many molecular biomarkers discovered in observational studies are yet to be adequately evaluated in clinical practice. In this article, we describe the principles of using biomarkers to individualise treatment and discuss the role of RCTs in assessing their clinical value. What is individualised treatment? We rely on RCTs to identify the most effective treatment for patients with a given condition. Classically, these trials randomly assign patients to new or standard treatment and compare the risk of disease events, or time to disease events, to measure the effectiveness of the new treatment as a relative risk or hazard ratio. The absolute risk reduction for individual patients depends on their baseline risk before treatment — that is, their prognosis — and whether their response to treatment varies from the overall effect measured in RCTs — the “treatment prediction” (Box 2). If we have access to this information, we can individualise treatment decisions by weighing up the size of benefits and harms of the new treatment for individual patients. 3 The full potential of using biomarkers to individualise treatment is not yet well understood. For example, trials have shown that anticoagulant therapy for the prevention of thromboembolic stroke in patients with non-valvular atrial fibrillation is more effective than standard care, but this does not mean that all patients will benefit. On the basis of trial results showing that anticoagulant therapy leads to a 70% relative risk reduction for major stroke, we can estimate that if 100 patients with a baseline risk of stroke of 10% were treated, seven strokes would be avoided. 3 However, some patients would not have had a stroke, regardless of whether they received the anticoagulant therapy, and others would not respond to the anticoagulant therapy and still have a stroke (90 and three patients, respectively), but both groups might still experience the side effects of treatment. Ideally, a biomarker or panel of biomarkers could be used to identify the small subgroup of patients most likely to receive a clinical benefit — those who would otherwise most certainly have a stroke (the perfect prognostic test) and also respond to treatment (the perfect predictive test) — and offer treatment only to this group. This would obviate adverse events and unnecessary costs of treatment for low-risk patients and provide the opportunity to offer an alternative therapy to high-risk patients who would not be respon- sive to this treatment. Identifying biomarkers that classify prognosis or predict response When a biomarker is discovered to be a promising classifier of patient outcome, further studies are needed to validate its reliabil- Molecular biomarkers to individualise treatment: assessing the evidence Chee K Lee, Sarah J Lord, Alan S Coates and R John Simes ABSTRACT The absolute benefit of a treatment varies between individuals depending on their prognosis before treatment and whether their response to the treatment varies from the overall relative risk reduction measured in clinical trials. Based on these principles, biomarkers that can provide information about an individual’s prognosis or predict his or her treatment response can be used to tailor treatment decisions to individual patients. Many novel molecular biomarkers are currently available. Although there is evidence to show that some of these can improve patient outcomes through improved biomarker- guided treatment strategies, others are yet to be adequately evaluated. Randomised controlled trials (RCTs) can distinguish whether a biomarker provides prognostic or predictive information and assess whether using a biomarker to guide treatment improves patient outcomes. Targeted RCTs can be used to demonstrate the efficacy of treatment in a restricted biomarker-defined population, and non-targeted RCTs can compare biomarker-guided versus conventional test-guided treatment strategies in broader MJA 2009; 190: 631–636 populations. T 1 Definitions Biomarker: a “characteristic that is objectively measured and evaluated as an indicator of normal biological processes, pathogenic processes, or pharmacological responses to a therapeutic intervention”. 1 Molecular biomarkers include genetic factors measured as variations or mutations of DNA sequence, epigenetic factors, and levels of messenger RNA and proteins. Prognostic biomarker: classifies an individual’s baseline risk of having a clinical event. Predictive biomarker: classifies the magnitude of an individual’s response to treatment.

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Page 1: Molecular biomarkers to individualise treatment: …...treatment in a restricted biomarker-defined population, and non-targeted RCTs can compare biomarker-guided versus conventional

FROM BENCH TO BEDSIDE

Molecular biomarkers to individualise treatment: assessing the evidence

Chee K Lee, Sarah J Lord, Alan S Coates and R John Simes

The Medical Journal of Australia ISSN: 0025-729X 1 June 2009 190 11 631-636©The Medical Journal of Australia 2009www.mja.com.auFrom Bench to Bedside

RNA or protein expression that are associated with aof disease events, survival time or response to treamolecular biomarkers to supplement or replace clinicopathological factors has the potential to tpractice of medicine by creating new opportunities fand tailoring treatments to individual patients.

The clinical value of some molecular biomark

MJA • Volume 190 Num

ABSTRACT

• The absolute benefit of a treatment varies between individuals depending on their prognosis before treatment and whether their response to the treatment varies from the overall relative risk reduction measured in clinical trials.

• Based on these principles, biomarkers that can provide information about an individual’s prognosis or predict his or her treatment response can be used to tailor treatment decisions to individual patients.

• Many novel molecular biomarkers are currently available. Although there is evidence to show that some of these can improve patient outcomes through improved biomarker-guided treatment strategies, others are yet to be adequately evaluated.

• Randomised controlled trials (RCTs) can distinguish whether a biomarker provides prognostic or predictive information and assess whether using a biomarker to guide treatment improves patient outcomes.

• Targeted RCTs can be used to demonstrate the efficacy of treatment in a restricted biomarker-defined population, and non-targeted RCTs can compare biomarker-guided versus conventional test-guided treatment strategies in broader

MJA 2009; 190: 631–636populations.

heanin T

development of rapid high-throughput technologies to

alyse DNA, RNA and protein has led to a paradigm shiftour understanding of the molecular basis of disease.

Molecules that can be used to differentiate between normal andabnormal biological processes or predict treatment responses aretermed “molecular biomarkers” (Box 1).1 Examples include DNAsequence mutations, epigenetic changes, and levels of messenger

patient’s risktment. Use ofconventional

ransform theor developing

ers has beenestablished by trials that have demonstrated that biomarker-guidedtreatment strategies improve patient outcomes. For example,randomised controlled trials (RCTs) have provided evidence aboutthe value of measuring oestrogen receptor (ER) status in womenwith breast cancer to identify those who will benefit from targetedtreatment with anti-oestrogen therapy and those who will not.However, many molecular biomarkers discovered in observationalstudies are yet to be adequately evaluated in clinical practice.

In this article, we describe the principles of using biomarkers toindividualise treatment and discuss the role of RCTs in assessingtheir clinical value.

What is individualised treatment?

We rely on RCTs to identify the most effective treatment forpatients with a given condition. Classically, these trials randomlyassign patients to new or standard treatment and compare the riskof disease events, or time to disease events, to measure theeffectiveness of the new treatment as a relative risk or hazard ratio.The absolute risk reduction for individual patients depends ontheir baseline risk before treatment — that is, their prognosis —and whether their response to treatment varies from the overalleffect measured in RCTs — the “treatment prediction” (Box 2). Ifwe have access to this information, we can individualise treatmentdecisions by weighing up the size of benefits and harms of the newtreatment for individual patients.3

The full potential of using biomarkers to individualise treatmentis not yet well understood. For example, trials have shown thatanticoagulant therapy for the prevention of thromboembolicstroke in patients with non-valvular atrial fibrillation is moreeffective than standard care, but this does not mean that allpatients will benefit. On the basis of trial results showing thatanticoagulant therapy leads to a 70% relative risk reduction formajor stroke, we can estimate that if 100 patients with a baselinerisk of stroke of 10% were treated, seven strokes would beavoided.3 However, some patients would not have had a stroke,regardless of whether they received the anticoagulant therapy, andothers would not respond to the anticoagulant therapy and stillhave a stroke (90 and three patients, respectively), but both groupsmight still experience the side effects of treatment. Ideally, a

biomarker or panel of biomarkers could be used to identify thesmall subgroup of patients most likely to receive a clinical benefit— those who would otherwise most certainly have a stroke (theperfect prognostic test) and also respond to treatment (the perfectpredictive test) — and offer treatment only to this group. Thiswould obviate adverse events and unnecessary costs of treatmentfor low-risk patients and provide the opportunity to offer analternative therapy to high-risk patients who would not be respon-sive to this treatment.

Identifying biomarkers that classify prognosis or predict response

When a biomarker is discovered to be a promising classifier ofpatient outcome, further studies are needed to validate its reliabil-

1 DefinitionsBiomarker: a “characteristic that is objectively measured and evaluated as an indicator of normal biological processes, pathogenic processes, or pharmacological responses to a therapeutic intervention”.1 Molecular biomarkers include genetic factors measured as variations or mutations of DNA sequence, epigenetic factors, and levels of messenger RNA and proteins.Prognostic biomarker: classifies an individual’s baseline risk of having a clinical event.Predictive biomarker: classifies the magnitude of an individual’s response to treatment. ◆

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ity in independent patient populations and its discriminatorypower compared with conventional clinicopathological tests.4-6 Itsclinical value can then be determined by considering how thisinformation will be used to guide treatment. This will depend onwhether it can be used to classify patient prognosis, predicttreatment response, or both. This information is not usuallyavailable from initial biomarker discovery studies, which are oftenundertaken retrospectively using specimens collected from a con-venience sample of patients who have received no treatment, thesame treatment, or a wide range of treatments.

Single-arm studies conducted in untreated populations can beused to identify prognostic biomarkers; however, RCTs are neededto determine whether these biomarkers can also be used to predicttreatment response and how they may best be used to guidetreatment. This is illustrated by the use of conventional biomarkersto guide decisions about cholesterol-lowering therapy. Large epide-miological studies have demonstrated the prognostic value ofserum cholesterol to predict a patient’s risk of cardiovascularevents,7,8 and RCTs have demonstrated that cholesterol-loweringtherapy can reduce these risks.9 This leads to the question ofwhether serum cholesterol level or other conventional prognosticbiomarkers can also predict who will respond to this treatment. Toanswer this question, RCTs that are large enough to comparetreatment effects between biomarker-defined patient subgroups areneeded. These comparisons use a simple statistical test for interac-tion. Alternatively, more sophisticated statistical methods can be

used to explore the relationship between biomarker test results asa continuous variable and treatment effects.10,11

The Cholesterol Treatment Trialists’ prospective meta-analysis ofcholesterol-lowering trials confirmed the prognostic value of con-ventional biomarkers (total serum cholesterol, age, presence ofhypertension, etc) but found that none of these biomarkersprovided additional information to predict treatment response (ie,no biomarker–treatment interaction).9 For example, patients withthe highest cholesterol level (> 6.5mmol/L) had the highest risk ofmajor vascular events, but all patients, including those at thelowest risk (cholesterol level, < 5.2mmol/L), benefited from cho-lesterol-lowering treatment; a relative risk reduction for majorvascular events of around 20% in each risk group was reported(Box 3). Given similar treatment effects across different riskgroups, patients at the highest risk will gain the greatest absolutebenefit from treatment in terms of the total number of eventsavoided. Thus, prognostic information can be used to targettreatment to patients at sufficiently high risk of events that the sizeof the absolute benefits justifies the costs and potential harms ofthe treatment.

Some biomarkers can provide both prognostic and predictiveinformation, and this is often the case in cancer. An example is theER status in breast cancer. Trial data from patients assigned tosurgery without systemic adjuvant therapy have indicated that ER-positive tumours are associated with better early survival than ER-negative tumours; however, the difference in prognosis by ERstatus is relatively small and time-dependent.13,14 It was thediscovery, through RCTs, that ER status predicts response totamoxifen that transformed the use of anti-oestrogen therapy inthe management of breast cancer. The Early Breast Cancer Trialists’Collaborative Group’s meta-analysis of tamoxifen trials showedthat tamoxifen reduced the risk of death among women with ER-positive tumours but not among women with ER-negativetumours (test for interaction, P < 0.00001; Box 3).12

Trial design for biomarker evaluation

When the potential role of a biomarker to guide treatment hasbeen defined, its clinical value can be assessed by following thesame rules of evidence that apply to the assessment of newtreatments. Ideally, an RCT would be undertaken to test thehypothesis that the proposed biomarker-guided treatment strategyimproves patient outcomes compared with the conventional test-ing strategy. Sometimes this information is available from existingRCTs of treatment. For example, tamoxifen trials have providedevidence about the difference in patient outcomes if tamoxifen isreserved for patients with ER-positive breast tumours comparedwith the scenario without ER testing where treatment may be givento all women (or none).12 One exception where an RCT may notbe justified is when a prognostic biomarker can accurately identifypatients at low risk of disease who can safely avoid treatment. Inthis situation, single-arm studies demonstrating the prognosticaccuracy of the biomarker versus conventional tests may suffice.

Classical trialsUsing a classical RCT design, the impact of treatment with theavailability of a novel biomarker can be tested by randomlyassigning patients to either the biomarker test with or withoutconventional tests, or conventional tests only (Box 4). This designevaluates the effectiveness of the combination of the new bio-

2 Role of biomarkers to classify patient prognosis or predict treatment response for individualised treatment decisions*

* Flow chart reproduced with permission from Lord S, Lee C, Simes RJ. The role of prognostic and predictive markers in cancer. Cancer Forum 2008; 32 (3): 139-142;2 hypothetical example based on clinical scenario from Glasziou PP, Irwig LM. An evidence based approach to individualising treatment. BMJ 1995; 311: 1356-1359.3

Prognostic biomarkers: use to determine whether further treatment is needed

Individualbaseline risk

Treatmentrelative risk reduction

Individualised treatment decisions

Size of benefits

and harms

Absoluterisk reduction

Hypothetical example: patients with atrial fibrillation at risk of thromboembolic stroke

Predictive biomarkers: use to determine which treatment to use

Patient preferences

Resources and community

values

Baseline risk (BR) of stroke ~10%, estimated from epidemiological studies

Relative risk reduction (RRR) ~70%, estimated from randomised controlled trials comparing new treatment with standard care

Absolute risk reduction (ARR) ~7%, calculated using the formula: ARR = BR x RRR

If 100 patients were treated, 7 strokes would be avoided

90 patients would not have had a stroke, whether they received the new treatment or not

3 patients would not respond to the new treatment and still have a stroke

All patients would be at risk of side effects from the new treatment (risk of intracranial haemorrhage ~0.2 per 100 patients treated)

632 MJA • Volume 190 Number 11 • 1 June 2009

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marker test and the subsequent treatment intervention. However,it is an inefficient design as a large number of patients are neededbut only patients with a biomarker test result that disagrees withthe conventional test result contribute to the expected outcomefrom the treatment intervention.15 All patients testing positive byboth investigations will receive the same treatment intervention,hence the biomarker does not discriminate outcomes for thesepatients.

Targeted trialsAn alternative approach is a targeted RCT,16,17 also referred to as anenrichment design, which involves upfront testing of all patients forthe biomarker of interest and selecting only patients with biomar-ker results that will lead to a change in outcome with the proposedtreatment. This is more efficient than a classical design as thosewithout the biomarker of interest are excluded from the study,hence fewer patients are enrolled (Box 4). A positive trial resultprovides evidence about the effectiveness of using the biomarker toguide treatment. The design is generally used when there is robusta priori biological evidence that treatment is effective or moreeffective in the biomarker-defined population.

As targeted trials recruit patients with the same biomarkerstatus, they can be used to assess the efficacy of a new treatment ina biomarker-defined population, or the efficacy of an existingtreatment in a subgroup of patients newly defined by a biomarker.Recent oncology trials provide examples of these scenarios.

Testing a new treatment in a biomarker-defined population.The pivotal trial for trastuzumab, a monoclonal antibody againstthe human epidermal growth factor receptor 2 (HER2) protein,was undertaken in a targeted population of women withmetastatic breast cancer who were positive for HER2 (Box 5).This trial showed the efficacy of the combined strategy of testingfor HER2 status and treating women with HER2-positivetumours with trastuzumab.18 Subsequent research has focusedon improving assay methods and the cut-off level of HER2amplification or expression to optimise the predictive perform-ance of HER2, to identify women who will benefit fromtreatment with trastuzumab.23

Testing an existing treatment in a subgroup of patients newlydefined by a biomarker. Oncotype DX is a 21-gene prognosticassay developed to classify women with node-negative, ER-posi-tive breast cancer into three categories according to their risk ofdeveloping recurrent disease (low, intermediate and high risk). Ithas been proposed to guide treatment decisions by sparing womenwho are at low risk unnecessary chemotherapy, and identifyingthose who are at high risk and need treatment. Oncotype DX iscurrently being prospectively assessed in the TAILORx trial (TrialAssigning Individualized Options for Treatment [Rx]).19 The pri-mary objective of the trial is to investigate the efficacy of chemo-therapy as an addition to hormone therapy in women who are atintermediate risk (recurrence score, 11–25) (Box 5). The workingpremise is that patients in the intermediate-risk group will do noworse with hormone therapy alone than they would with hormonetherapy plus chemotherapy. This study assumes that chemother-apy does not improve outcomes in patients at low risk (recurrencescore, < 11) but will be beneficial in patients at high risk (recur-rence score, > 25).

Targeted RCTs offer an efficient method to show proof ofconcept for the efficacy of treatment in biomarker-selected patientgroups. They can be used where there is a biological assumptionthat only a biomarker-defined patient group will benefit from thenew treatment; hence restricting the trial to this group (eg,biomarker-positive patients) is more efficient and potentially moreethical. However, molecular pathways of tumour pathogenesis arecomplex and often not clearly understood, so questions about theefficacy of treatment in biomarker-negative patients may alsowarrant consideration. For example, trastuzumab was recentlyreported to have efficacy in HER2-negative patients in a retrospec-tive analysis of a broader patient population that included bothHER2-positive and HER2-negative patients.24

Non-targeted trialsIn contrast to targeted trials, non-targeted (or unselected design)trials do not restrict recruitment to a single biomarker-definedsubgroup of patients. This design is needed to assess the predictivevalue of a biomarker to distinguish between patients who will

3 Meta-analyses demonstrating prognostic and predictive value of biomarkers

ER = oestrogen-receptor. * All patients were included in meta-analysis. † Includes cases where ER status was unknown. ◆

Risk of major vascular events following cholesterol-lowering therapy versus no cholesterol-lowering therapy, by total serum cholesterol level9

Total cholesterol (mmol/L) Treatment events Control events Relative risk (95% CI)

� 5.2 1465 (13.5%) 1808 (16.6%) 0.76 (0.69–0.85)

> 5.2 to 6.5 3312 (13.9%) 4159 (17.4%) 0.79 (0.75–0.83)

> 6.5 1457 (15.2%) 1992 (19.7%) 0.80 (0.76–0.86)

All* 6354 (14.1%) 7994 (17.8%) 0.79 (0.77–0.81)

Breast cancer mortality in women with early breast cancer after tamoxifen treatment versus control, by ER status12

ER status Tamoxifen events Control events Tamoxifen/control death rate ratio (95% CI)

Negative 407 (17.8%) 402 (17.2%) 1.04 (0.90–1.21)

Positive 812 (19.3%) 1111 (27.1%) 0.66 (0.60–0.72)

All† 6492 (19.0%) 6450 (23.3%) 0.76 (0.70–0.82)

0.5 0.6 0.7 0.8 0.9 1 2favours treatment favours control

0.5 0.6 0.7favours tamoxifen favours control

0.8 0.9 1 2

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respond differently to the same treatment (Box 4), or compare theefficacy of a new biomarker-guided treatment strategy with currentbest practice using conventional testing.

The International Breast Cancer Study Group Trial IX, whichrandomly assigned postmenopausal node-negative early-stagebreast cancer patients, stratified according to ER status, to chemo-therapy followed by tamoxifen versus tamoxifen alone, is anexample of the first situation. An example of the second situation isthe ongoing MINDACT (Microarray In Node-negative Disease mayAvoid ChemoTherapy) trial, which is comparing the prognosticvalue of a 70-gene signature for breast cancer with establishedclinicopathological criteria to identify women with node-negativeearly-stage breast cancer who can safely avoid adjuvant chemo-therapy (Box 5). Unlike the TAILORx trial, the MINDACT trialdoes not restrict randomisation to one biomarker-defined patientsubgroup. All women are assessed by using both the new biomar-ker gene signature and conventional criteria to classify their risk ofdisease recurrence. Only women with discordant results (biomar-ker-negative and conventional criteria-positive, or vice versa) arerandomly assigned to receive chemotherapy or no chemotherapy;women with concordant results are not randomised but treatedaccording to the standard of care (women at low risk withobservation, and women at high risk with chemotherapy). Thistrial will provide data that compare patient outcomes whenchemotherapy is selected according to the biomarker versusconventional criteria.

Non-targeted trials generally require a large sample size, particu-larly if the incremental effects of offering treatment to patients

reclassified using a biomarker are small.Hence, their main disadvantage is that theymay not be feasible if a small proportion ofpatients tested with the target condition areeligible — for example, if biomarker preva-lence is low. Design variations to optimisethe efficiency of non-targeted trial designsare discussed elsewhere and are beyond thescope of this article.17

Biomarker analysis within an existing RCTA pre-specified analysis of prospective datacollected from an existing RCT of treatmentcan sometimes be used to test a hypothesisabout the prognostic or predictive value of abiomarker (Box 4). This study design wasused to assess K-ras status as a predictor ofresponse to panitumumab, an epidermalgrowth factor receptor inhibitor, in patientswith metastatic, chemotherapy-refractorycolorectal cancer. Investigators used archi-val tissue from an earlier RCT, which dem-onstrated the efficacy of panitumumabcompared with best supportive care in anon-targeted population, to test the hypoth-esis that K-ras status predicts treatmentresponse (Box 5).22,25

This study design has the advantage oftime and cost efficiency. Its major disadvan-tage is the potential for selection bias ifarchival tissue or serum data are not avail-

able for all patients. Other disadvantages include measurementbias if measurements of the biomarker or statistical analyses arenot blinded, and chance false-positive findings due to multiplecomparisons, particularly with trial data used to explore multiplecandidate biomarkers. These problems reduce the validity of studyresults, so analyses should only be considered if the biomarker canbe measured on all or a large representative sample of all patients.Furthermore, the design needs a biologically plausible hypothesis,a prospectively defined protocol for the biomarker assays, andstatistical analysis plans.

Implications for future trialsThe current availability of genomic, transcriptomic, proteomic,metabolic and other similar technologies provides unprecedentedopportunities for individualised treatment through the discoveryof molecular biomarkers and the development of molecularlytargeted therapies. The conventional rules of evidence for evaluat-ing these new technologies have not changed, but the need formore efficient RCTs has led to innovations in the design of targetedand non-targeted trials. If an existing treatment trial has archivedspecimens from all, or most, participants, then an efficient andreliable evaluation of a new biomarker may be achievable byfurther analysis of these specimens. Future trials should bedesigned to anticipate these data needs.

AcknowledgementWe thank Rhana Pike for assistance in preparation of this article.

4 Randomised controlled trial (RCT) designs for biomarker evaluation

R = randomisation. * Research hypotheses may be pre-specified in the trial protocol (prior to study unblinding) or defined retrospectively. ◆

Population

Treatment Control

Outcomes

Treatment Control

Outcomes

R

Conventionaltests only

Biomarker test +/–conventional tests

Classical RCT

Population

Treatment Control

Outcomes

Treated accordingto standard of care

R

Biomarker positive Biomarker negative

Targeted RCT

Population

Biomarker positive

Non-targeted RCT (stratified by biomarker)

Population

Biomarker analysis

Biomarkerpositive

Biomarkernegative

Outcomes

Biomarkerpositive

Biomarkernegative

Outcomes

R

Treatment Control

Outcomes

R

Treatment Control

Outcomes

R

Treatment ControlBiomarker negative

Biomarker analysis within existing RCT*

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Competing interestsNone identified.

Author detailsChee K Lee, MB BS, MMedSci, FRACP, Oncology Research Fellow1

Sarah J Lord, MB BS, MS(Epi), Epidemiologist1,2

Alan S Coates, AM, MD, FRACP, Clinical Professor3,4

R John Simes, MB BS, FRACP, SM, Director1

1 NHMRC Clinical Trials Centre, University of Sydney, Sydney, NSW.2 Screening and Test Evaluation Program, University of Sydney, Sydney,

NSW.3 School of Public Health, University of Sydney, Sydney, NSW.4 International Breast Cancer Study Group, Bern, Switzerland.Correspondence: [email protected]

References1 Biomarkers Definitions Working Group. Biomarkers and surrogate end-

points: preferred definitions and conceptual framework. Clin PharmacolTher 2001; 69: 89-95.

2 Lord S, Lee C, Simes RJ. The role of prognostic and predictive markers incancer. Cancer Forum 2008; 32 (3): 139-142.

3 Glasziou PP, Irwig LM. An evidence based approach to individualisingtreatment. BMJ 1995; 311: 1356-1359.

4 Hayes DF, Bast RC, Desch CE, et al. Tumor marker utility grading system:a framework to evaluate clinical utility of tumor markers. J Natl CancerInst 1996; 88: 1456-1466.

5 Pepe MS. Evaluating technologies for classification and prediction inmedicine. Stat Med 2005; 24: 3687-3696.

6 Ransohof DF. How to improve reliability and efficiency of research aboutmolecular markers: roles of phases, guidelines, and study design. J ClinEpidemiol 2007; 60: 1205-1219.

7 Rose G, Shipley M. Plasma cholesterol concentration and death fromcoronary heart disease: 10 year results of the Whitehall study. Br Med J(Clin Res Ed) 1986; 293: 306-307.

8 The Pooling Project Research Group. Relationship of blood pressure,serum cholesterol, smoking habit, relative weight and ECG abnormalitiesto incidence of major coronary events: final report of the pooling project.J Chronic Dis 1978; 31: 201-306.

9 Baigent C, Keech A, Kearney PM, et al; Cholesterol Treatment Trialists’(CTT) Collaborators. Efficacy and safety of cholesterol-lowering treat-ment: prospective meta-analysis of data from 90,056 participants in 14randomised trials of statins. Lancet 2005; 366: 1267-1278.

10 Bonetti M, Gelber R. A graphical method to assess treatment–covariateinteractions using the Cox model on subsets of the data. Stat Med 2000;19: 2595-2609.

11 Royston P, Sauerbrei W. A new approach to modeling interactionsbetween treatment and continuous covariates in clinical trials by usingfractional polynomials. Stat Med 2004; 23: 2509-2525.

12 Early Breast Cancer Trialists’ Collaborative Group (EBCTCG). Effects ofchemotherapy and hormonal therapy for early breast cancer on recur-rence and 15-year survival: an overview of the randomised trials. Lancet2005; 365: 1687-1717.

13 Saphner T, Tormey DC, Gray R. Annual hazard rates of recurrence forbreast cancer after primary therapy. J Clin Oncol 1996; 14: 2738-2746.

14 Fisher B, Redmond C, Fisher ER, Caplan R. Relative worth of estrogen orprogesterone receptor and pathologic characteristics of differentiationas indicators of prognosis in node negative breast cancer patients:findings from National Surgical Adjuvant Breast and Bowel ProjectProtocol B-06. J Clin Oncol 1988; 6: 1076-1087.

15 Bossuyt PM, Lijmer JG, Mol BW. Randomised comparisons of medicaltests: sometimes invalid, not always efficient. Lancet 2000; 356: 1844-1847.

16 Sargent DJ, Conley BA, Allegra C, Collette L. Clinical trial designs forpredictive marker validation in cancer treatment trials. J Clin Oncol 2005;23: 2020-2027.

17 Simon R, Maitournam A. Evaluating the efficiency of targeted designs forrandomized clinical trials. Clin Cancer Res 2004; 10: 6759-6763.

5 Purposes of randomised controlled trials (RCTs) used to evaluate biomarkers: recent examples in oncology

EGFR = epidermal growth factor receptor. ER = oestrogen receptor. HER2 = human epidermal growth factor receptor 2. IBSCG = International Breast Cancer Study Group. MINDACT = Microarray In Node-negative Disease may Avoid ChemoTherapy. TAILORx = Trial Assigning Individualized Options for Treatment (Rx). ◆

Trial Target condition Inclusion criteria Treatment comparison Purpose

Targeted trials

HER2 trastuzumab trial18 Progressive metastatic breast cancer

HER2-positive tumour Trastuzumab + chemotherapy versus chemotherapy alone

Test for effect of new treatment in a subgroup of patients defined by an existing biomarker

TAILORx19 Operable node-negative,ER-positive, HER2-negative early-stage breast cancer

Oncotype DX score 11–25 (intermediate risk of recurrence)

Chemotherapy + tamoxifen versus tamoxifen alone

Test for effect of existing treatment in a subgroup of patients defined by a new biomarker

Non-targeted trials

IBCSG Trial IX20 Operable node-negative, postmenopausal early-stage breast cancer

ER-positive, ER-negative andER-unknown

Chemotherapy + tamoxifen versus tamoxifen alone

Test for differences in treatment effect according to biomarker status

MINDACT21 Operable node-negative,ER-positive early-stage breast cancer

Genomic test result discordant with clinical criteria for classification of risk of recurrence: genomic low risk, clinical high risk; or genomic high risk, clinical low risk

Chemotherapy versus no chemotherapy

Test for differences in treatment effect between biomarker-guided and conventional test-guided treatment strategies

Biomarker analysis within an existing RCT

K-ras panitumumab trial22 Progressive, metastatic, chemotherapy-refractory colorectal cancer; � 1% EGFR-positive

Subset of trial participants with measurable K-ras mutation status of tumour (mutant versus wild-type)

Panitumumab + best supportive care versus best supportive care alone

Test for differences in treatment effect according to biomarker status

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18 Salmon DJ, Leyland-Jone B, Shak S. Use of chemotherapy plus amonoclonal antibody against HER2 positive metastatic breast cancerthat overexpresses HER2. N Engl J Med 2001; 344: 783-792.

19 Sparano JA, Paik S. Development of the 21-gene assay and itsapplication in clinical practice and clinical trials. J Clin Oncol 2008; 26:721-728.

20 International Breast Cancer Study Group (IBCSG). Endocrine responsive-ness and tailoring adjuvant therapy for postmenopausal lymph node-negative breast cancer: a randomized trial. J Natl Cancer Inst 2002; 94:1054-1065.

21 Bogaerts J, Cardoso F, Buyse M, et al. Gene signature evaluation as aprognostic tool: challenges in the design of the MINDACT trial. Nat ClinPract Oncol 2006; 3: 540-551.

22 Karapetis CS, Khambata-Ford S, Jonker DJ, et al. K-ras mutations andbenefit from cetuximab in advanced colorectal cancer. N Engl J Med2008; 359: 1757-1765.

23 Wolff AC, Hammond ME, Schwartz JN, et al. American Society of ClinicalOncology/College of American Pathologists guideline recommenda-tions for human epidermal growth factor receptor 2 testing in breastcancer. J Clin Oncol 2007; 25: 118-145.

24 Paik S, Kim C, Wolmark N. HER2 status and benefit from adjuvanttrastuzumab in breast cancer. N Engl J Med 2008; 358: 1409-1411.

25 Amado RG, Wolf M, Peeters M, et al. Wild-type KRAS is required forpanitumumab efficacy in patients with metastatic colorectal cancer. J ClinOncol 2008; 26: 1626-1634.

(Received 21 Nov 2008, accepted 16 Feb 2009) ❏

636 MJA • Volume 190 Number 11 • 1 June 2009