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Mendel: Not a clue about chromosomes!
• Mendel performed all his work on pea plants without knowing about chromosomes
• Essentials of Mendel:
– True-breeding Parental plants: when self-fertilized, only produced offspring that looked identical to themselves
– The dominant allele determines the organism’s appearance, and the recessive allele has no noticeable effect on appearance
Mendel’s Model
• The model accounts for the 3:1 ratio observed in the F2 generation of Mendel’s crosses
• Possible combinations of sperm and egg can be shown using a Punnett square
• A capital letter represents a dominant allele, and a lowercase letter represents a recessive allele
P Generation
F1 Generation
Appearance:
Genetic makeup:
Gametes:
Purple flowers
PP
White flowers
pp
Purple flowers
Pp
P p
P p12
12
P p
p
PPP Pp
ppPp
Sperm from F1 (Pp) plant
F2 Generation
Appearance:
Genetic makeup:
Gametes:
Eggs from
F1 (Pp) plant
3 : 1
Useful Genetic Vocabulary
• An organism with two identical alleles for a character is homozygous for the gene controlling that character
• An organism that has two different alleles for a gene is heterozygous for the gene controlling that character
• Unlike homozygotes, heterozygotes are not true-breeding
Genotype vs. Phenotype
• Because of the different effects of dominant and recessive alleles, an organism’s traits do not always reveal its genetic composition
• Therefore, we distinguish between an organism’s phenotype, or physical appearance, and its genotype, or genetic makeup
• In the example of flower color in pea plants, PP and Pp plants have the same phenotype (purple) but different genotypes
Phenotype Genotype
Purple PP
(homozygous)
Purple
Purple
White
Ratio 3:1 Ratio 1:2:1
Pp
(heterozygous)
Pp
(heterozygous)
pp
(homozygous)
3
1 1
1
2
The Testcross
• An individual with the dominant phenotype could be either homozygous dominant or heterozygous
• To determine the genotype we can carry out a testcross: breeding the mystery individual with a homozygous recessive individual
• If any offspring display the recessive phenotype, the mystery parent must be heterozygous
Dominant phenotype,unknown genotype:
PP or Pp?
Recessive phenotype,known genotype:
pp
Predictions
Eggs
All offspring purple
or
1 2 offspring purple and
offspring white1 2
Eggs
Results
Technique
If purple-floweredparent is PP
If purple-floweredparent is Pp
Sperm Sperm
or
pp p p
P
p
P
P
Pp Pp
PpPp pp
Pp Pp
pp
Dihybrid Cross
• Mendel identified his second law of inheritance by following two characters at the same time
• Crossing two true-breeding parents differing in two characters produces dihybrids in the F1
generation, heterozygous for both characters
• A dihybrid cross, a cross between F1 dihybrids, can determine whether two characters are transmitted to offspring as a package or independently
Experiment
P Generation
F1 Generation
Predictions
Predicted
offspring of
F2 generation
EggsEggs
or
Sperm
Hypothesis of
dependent assortment
Hypothesis of
independent assortment
Sperm
YyRr
yrYR
YR Yr y
R
yr
YR
Yr
yR
yr
YYRR
YYRr
YyRR
YyRr Yyrr
YyRr
YYrr
YYRr YyRR
YyRr
yyRR
yyRr yyrr
yyRr
Yyrr
YyRr
14
14
14
14
14
14
14
14
14
12
43
12
12
12
YyRr
YYRR YyRr
yyrr
169
Phenotypic ratio 3:1
Results
315 108 101 32 Phenotypic ratio approximately 9:3:3:1
161
163
163
Phenotypic ratio 9:3:3:1
Gametes
YYRR yyrr
YR
yr
yrYR
Probability laws govern Mendelian inheritance
• Mendel’s laws of segregation and independent assortment reflect the rules of probability
• When tossing a coin, the outcome of one toss has no impact on the outcome of the next toss
• In the same way, the alleles of one gene segregate into gametes independently of another gene’s alleles
The Multiplication and Addition Rules
Applied to Monohybrid Crosses
• The multiplication rule states that the probability that two or more independent events will occur together is the product of their individual probabilities
• Probability in an F1 monohybrid cross can be determined using the multiplication rule
• Segregation in a heterozygous plant is like flipping a coin: Each gamete has a ½ chance of carrying the dominant allele and a ½ chance of carrying the recessive allele
Eggs
12
Sperm
Rr
Segregation of
alleles into eggs
Rr
Segregation of
alleles into sperm
12
14
14
14
14
12
12R
R
RR
R
r
r
rrr
Rr
• The addition rule states that the probability that any one of two or more exclusive events will occur is calculated by adding together their individual probabilities
• The rule of addition can be used to figure out the probability that an F2 plant from a monohybrid cross will be heterozygous rather than homozygous
The Multiplication and Addition Rules
Applied to Monohybrid Crosses
Inheritance patterns are often more complex
than predicted by simple Mendelian genetics
• The relationship between genotype and phenotype is rarely as simple as in the pea plant characters Mendel studied
• Many heritable characters are not determined by only one gene with two alleles
• However, the basic principles of segregation and independent assortment apply even to more complex patterns of inheritance
Extending Mendelian Genetics for
a Single Gene
• Inheritance of characters by a single gene may deviate from simple Mendelian patterns in the following situations:
– When alleles are not completely dominant or recessive
– When a gene has more than two alleles
– When a gene produces multiple phenotypes
Degrees of Dominance
• Complete dominance occurs when phenotypes of the heterozygote and dominant homozygote are identical
• In incomplete dominance, the phenotype of F1 hybrids is somewhere between the phenotypes of the two parental varieties
• In codominance, two dominant alleles affect the phenotype in separate, distinguishable ways
P Generation
F1 Generation
F2 Generation
Gametes
Sperm
Eggs
PinkCRCW
WhiteCWCW
RedCRCR
Gametes CR CW
CR CW
CR CW
CR
CW
CRCR CRCW
CWCWCRCW
12
12
12
12
12
12
The Relation Between Dominance and
Phenotype
• A dominant allele does not subdue a recessive allele; alleles don’t interact that way
• Alleles are simply variations in a gene’s nucleotide sequence
• For any character, dominance/recessivenessrelationships of alleles depend on the level atwhich we examine the phenotype
• Tay-Sachs disease is fatal; a dysfunctional enzyme causes an accumulation of lipids inthe brain
– At the organismal level, the allele is recessive
– At the biochemical level, the phenotype (i.e., the enzyme activity level) is incompletely dominant
– At the molecular level, the alleles are codominant
The Level of Phenotype Matters
Frequency of Dominant Alleles
• Dominant alleles are not necessarily more common in populations than recessive alleles
• For example, one baby out of 400 in the United States is born with extra fingers or toes
• The allele for this unusual trait is dominant to the allele for the more common trait of five digits per appendage
• In this example, the recessive allele is far more prevalent than the population’s dominant allele
Frequency of Dominant Alleles
Multiple Alleles
• Most genes exist in populations in more than two allelic forms
• Example: 4 phenotypes of the ABO blood group in humans
– Determined by 3 alleles for the enzyme (I) that attaches A or B carbohydrates to red blood cells: IA, IB, and i.
• Enzyme encoded by the IA allele adds the A carbohydrate
• Enzyme encoded by the IB allele adds the B carbohydrate
• Enzyme encoded by the i allele adds neither
The three alleles for the ABO blood groups and theircarbohydrates
Blood group genotypes and phenotypes
Allele
Carbohydrate
Genotype
Red blood cellappearance
Phenotype(blood group)
A B AB O
iiIAIBIBIB IBiororIAIA IAi
IA IB i
(a)
(b)
A B none
Polygenic Inheritance
• Quantitative characters are those that vary in the population along a continuum
• Quantitative variation usually indicates polygenic inheritance, an additive effect of two or more genes on a single phenotype
• Example of polygenic inheritance: skin color in humans
Eggs
Sperm
AaBbCc AaBbCc
Phenotypes:
Number ofdark-skin alleles: 0 1 2 3 4 5 6
18
18
18
18
18
18
18
18
164
664
1564
2064
1564
664
164
18
18
18
18
18
18
18
18
A Mendelian View of Heredity and
Variation
• An organism’s phenotype includes:
– physical appearance
– internal anatomy
– physiology
– behavior
• Phenotype reflects overall genotype and unique environmental history
Many human traits follow Mendelian
patterns of inheritance
• Humans are not good subjects for genetic research
– Generation time is too long
– Parents produce relatively few offspring
– Breeding experiments are unacceptable (uh…illegal?)
• However, basic Mendelian genetics endures as the foundation of human genetics
Pedigree Analysis
• A pedigree is a family tree that describes the interrelationships of parents and children across generations
• Inheritance patterns of particular traits can be traced and described using pedigrees
Key
Male
Female
Affected
male
Affected
female
Mating
Offspring, inbirth order(first-born on left)
No widow’s peak
1st generation(grandparents)
2nd generation(parents, aunts,and uncles)
3rd generation(two sisters)
Is a widow’s peak a dominant or recessive trait?
Widow’s peak
wwWw ww Ww
WwWwWw
Ww
WW
ww ww ww
wwor
Key
Male
Female
Affected
male
Affected
female
Mating
Offspring, inbirth order(first-born on left)
Ff
Is an attached earlobe a dominant or recessive trait?
Attached earlobe Free earlobe
1st generation(grandparents)
2nd generation(parents, aunts,and uncles)
3rd generation(two sisters)
Ff ff Ff
Ff ffffff FfFfFF or
ff FF
Ff
or
The Behavior of Recessive Alleles
• Recessively inherited disorders show up only in individuals homozygous for the allele
• Carriers are heterozygous individuals who carrythe recessive allele but are phenotypically normal
– Most individuals with recessive disorders are born to carrier parents
• Example: Albinism is a recessive condition characterized by a lack of pigmentation in skin and hair
Eggs
Sperm
Normal Normal
Parents
Normal
Aa Aa
Aa
Aa
aa
AA
A a
a
A
Normal(carrier)
Normal(carrier)
Albino
• If a recessive allele that causes a disease is rare, then the chance of two carriers meeting and mating is low
• Consanguineous matings (mating between close relatives) increase the chance of mating between 2 carriers of the same rare allele
– Most societies and cultures have laws or taboos against mating among close relatives
The Behavior of Recessive Alleles
Cystic Fibrosis
• Cystic fibrosis
– Most common lethal genetic disease in the US
– 1 out of every 2,500 people of European descent
– Allele results in defective or absent chloride transport channels in plasma membranes leading to a buildup of chloride ions outside the cell
– Symptoms: mucus buildup in some internal organs and abnormal absorption of nutrients in the small intestine
Sickle-Cell Disease: A Genetic Disorder with
Evolutionary Implications
• Sickle-cell disease
– Affects 1 out of 400 people of African descent
– Caused by the substitution of a single amino acid in the hemoglobin protein in red blood cells
– Homozygous individuals: all hemoglobin is abnormal (sickle-cell)
– Symptoms: physical weakness, pain, organ damage, and even paralysis
• Heterozygotes (said to have sickle-cell trait) are usually healthy but may suffer some symptoms
– About 1 out of 10 African Americans has sickle-cell trait, an unusually high frequency
• Heterozygotes are less susceptible to the malaria parasite, so there is an advantage to being heterozygous in regions where malaria is common
Sickle-Cell Disease: A Genetic Disorder with
Evolutionary Implications
Sickle-cell alleles
Low O2
Sickle-cellhemoglobinproteins
Sickled redblood cells
Part of a fiber ofsickle-cell hemo-globin proteins
Sickle-cell alleleNormal allele
Very low O2
Sickle-celldisease
Sickle-celltrait
Sickled andnormal redblood cells
Part of a sickle-cellfiber and normalhemoglobin proteins
Sickle-cell andnormal hemo-globin proteins
Homozygote with sickle-cell disease: Weakness, anemia, pain and fever,organ damage
Heterozygote with sickle-cell trait: Some symptoms when blood oxygen isvery low; reduction of malaria symptoms
(a)
(b)
Dominantly Inherited Disorders
• Some human disorders are caused by dominant alleles
• Dominant alleles that cause a lethal disease are rare and arise by mutation
• Achondroplasia is a form of dwarfism caused by a rare dominant allele
Parents
Normaldd
DwarfDd
Sperm
Eggs
DdDwarf
DdDwarf
ddNormal
ddNormal
d
d
dD