mark ellisman, phd director, national center for microscopy and imaging research professor of...
TRANSCRIPT
Mark Ellisman, PhD
Director, National Center for Microscopy and Imaging Research
Professor of Neurosciences and Bioengineering University of California at San Diego, School of Medicine
Building the BIRNBuilding the BIRN
““BBiomedical iomedical IInformatics nformatics RResearch esearch NNetworketwork ( (BIRNBIRN)”)”
BRAIN STRUCTURE AND FUNCTION
THE CHALLENGE OF MULTIPLE SCALES
THE CHALLENGE OF FUNCTIONAL CORRELATIONS
Trans-Pacific TelemicroscopyTrans-Pacific Telemicroscopy
Tokyo XP(Chicago)
STAR TAP
TransPAC vBNS
(San Diego)SDSC
NCMIR(San Diego)
UCSD
UHVEM(Osaka, Japan)
CRL/MPT
NCMIR(San Diego)
UHVEM(Osaka, Japan)
1st
2nd
TELEMICROSCOPY & GRID - BASED COMPUTINGTELEMICROSCOPY & GRID - BASED COMPUTINGREMOTE ACCESS FOR DATA ACQUISITION AND REMOTE ACCESS FOR DATA ACQUISITION AND
ANALYSISANALYSIS
NETWORK
IMAGINGINSTRUMENTS COMPUTATIONAL
RESOURCES
MULTI-SCALEDATA-BASES
DATA ACQUISITION DATA ANALYSISADVANCEDCOMPUTERGRAPHICS
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National Partnership for Advanced Computational Infrastructure
National Center for Research Resources
NIH
Developing the Grid Cyber Developing the Grid Cyber
Architecture To Support Architecture To Support BBiomedical iomedical IInformatics nformatics
RResearch esearch NNetworketwork
DukeUCLA
Cal Tech
UCSD
Harvard
NIH/NCRR Centers for BioMedical Imaging and Computational Biololgy
UCSD-wide with Medical School
Cal-(IT)2NPACI/SDSC
“Deep Web”
“Surface Web”
Integrating Cyber Infrastructure to Link: •Advanced Imaging Instruments •Data Intensive Computing •Multi-Scale Brain Databases
Wireless “Pad” Web Interface
Form a National Scale Testbed andFederate Multi-scale NeuroImaging Data from Centers with High Field MRI and Advanced 3D Microscopes
BIRNBIRN
BIRN - Phase I - 2001-2002BIRN - Phase I - 2001-2002
National Partnership for Advanced Computational Infrastructure
National Center for Research Resources
NIH
““BIRN” is NIH’S BRAND NEW PROJECT to ESTABLISH BIRN” is NIH’S BRAND NEW PROJECT to ESTABLISH a a
BBIOMEDICAL IOMEDICAL IINFORMATICS NFORMATICS RRESEARCH ESEARCH NNETWORKETWORK