machinelearningforthepredictionof … · 2020. 7. 6. · [2] j. pan and w. tompkins. a real-time...

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Machine Learning for the Prediction of Autonomic Nervous System Response during Virtual Reality Treatment using Biometric Data Alistair Boyle 1,2 , Andrew Smith 1,2 , Roger Selzler 1 , François Charih 1 , Janet Holly 2 , Courtney Bridgewater 2 , Markus Besemann 3 , Dorothyann Curran 2 , Adrian D. C. Chan 1 , James R. Green 1 1 Carleton University, Ottawa, Canada; 2 The Ottawa Hospital Rehab Centre, Ottawa, Canada; 3 Canadian Forces, Health Services [email protected] We aim to improve the understanding and clinical management of Canadian Forces service members and veterans suffering concussion, complex pain, and PTSD using machine learning techniques on data collected from virtual reality treatment ses- sions at The Ottawa Hospital Rehab Centre. Strategy and Features At this point in the study the available data are limited: there are few patients and their time under treatment tends to be short. To make the most of this biometric data, we extract features reflecting typical biomechanical measures of stability (Centre of Pressure) using force plate data, heart rate variability and breathing rate from ECG, and approximate joint angles from 3D motion capture. These data form a time series which are used as inputs for machine learning. With more data available, it may be possible to perform machine learning directly on input data without extensive feature extraction. The clinician observations, actively collected during patient treatment, are used to identify regions of elevated SAANS response. These regions are used in training a neural network to identify symptoms of elevated SAANS response in the biometric data. With a trained predictor of SAANS response, biometric data can be processed in a computational pipeline and fed to the predictor to provide a delayed online predictor of SAANS response without clinician intervention. Introduction Mild traumatic brain injury (concussion), complex pain, and post- traumatic stress disorder (PTSD) are associated with heightened sym- pathetic activation of the autonomic nervous system (SAANS, “fight or flight response”). In Canadian Forces members and veterans, these con- ditions often occur as a triad (polytrauma), posing clinical challenges in their treatment and management. At The Ottawa Hospital Rehabilitation Centre, a key technique for treatment employs a Computer Assisted Reha- bilitation Environment (CAREN) facility; allowing patients to experience motion and interact with a virtual environment. Treatment occurs under the direct supervision of the treating clinician and requires a high degree of experience and training to achieve appropriate patient exposure. Our study aims to capture, analyze and eventually pro- vide “live” feedback to clinicians on patients’ SAANS response through minimally intrusive capture and analysis of biometric data that are not typically recorded, using machine learning techniques and cloud comput- ing resources. Methodology Patients are currently being recruited with a target of 60 patients over the 2 year study. Heart rate, breathing, and movement (acceleration) are captured from the Zephyr Biopatch HP (Medtronic). Time series for 3D motion capture (VICON), force plates under the treadmills, and the con- figuration of the simulated environment, CAREN hardware and D-Flow software (MotekForce Link), are stored for each session. Clinicians use a tablet-based custom app to record their observations of SAANS signs and symptoms, administer the simulator sickness questionnaire (SSQ), and record comments and common events, all time- stamped and uploaded to the cloud servers (SOSCIP/IBM). Study clinicians collect data from 3–6 activities lasting 15–300s (typical) over each 1h treatment session. Data are processed to compute features, largely focused on measures of variability. These features are used to (a) develop patient-specific models of pre-treatment baseline, and (b) to capture deviations from these patient-specific models during treatment and report the patient state to the clinician. Results Patient recruitment and healthy volunteer data collection are underway. Cloud resources (SOSCIP, https://saans.ca) are online and under continuous development. Analysis of the available data and neural network performance against our clinician “gold standard” is ongoing. Conclusion We expect that development of these data-based, observational techniques will be an important tool in training new clinicians, and improving patient outcomes by rapidly and consistently identifying changes in patient SAANS signs and symptoms to clinicians. This information may enable early reporting of over or under treatment and offers additional opportunities for dynamically tailored patient-specific therapy. We gratefully acknowledge our partners: CIMVHR, Mitacs, IBM, and SOSCIP. Ethics Approval: This study was approved by the research ethics boards of both the Ottawa Hospital and Carleton University. Quick Facts Control Subjects 8 Patients 5 of 60 Study End Date July 2020 Stimulus Clinician Treatment CAREN VR Biometric Data ECG, Force Plates heart rate, breathing 3D Motion Capture movement, balance Observations Tablet SSQ, signs & symptoms References [1] H. Fawaz, G. Forestier, J. Weber, L. Idoumghar, and P.-A. Muller. Deep learning for time series classification: a review. Data Mining and Knowledge Discovery, 33(4):917–963, 2019. [2] J. Pan and W. Tompkins. A real-time QRS detection algorithm. IEEE TBME, 3:230–236, 1985. [3] M. Abdelazez, P. Quesnel, A. D. C. Chan, and H. Yang. Signal quality analysis of ambulatory electrocardiograms to gate false myocardial ischemia alarms. IEEE TBME, 64(6):1318–1325, 2017. Rehabilitation Virtual Reality Lab control station 6-dof platform + dual treadmill + force plates 180° immersive VR screen Vicon 3D motion capture heart rate sensor engineer clincian patient The Ottawa Hospital Rehabilitation Centre b i o m e t r ic d a ta web server secure and encrypted access - public website - secure, anonymized data upload https://saans.ca - data processing - machine learning - data visualization control & analysis 24 core virtual machine, memory and storage allocated exclusively for our project; can be re-provisioned or extended as project needs evolve internet backend server estimated SAANS Machine Learning Deep Neural Network clinician assist data Treatment Outcome Target Zone induced neuroplastic change Underexposure insufficient stimulation Overexposure too much stimulation rapid symptom escalation adverse progress Figure 1: Biometric data collected during treatment is processed on cloud servers where machine learning is used to predict SAANS response. The predicted SAANS response can eventually be used to improve patient care by better targeting the ideal treatment zone. The predictor may also be used to support clinician training in detecting patient’s SAANS response. Figure 2: Processed biometric data: ECG to Heart Rate Variability, force plates to Centre of Pressure, and markers to “skeleton” motion.

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Page 1: MachineLearningforthePredictionof … · 2020. 7. 6. · [2] J. Pan and W. Tompkins. A real-time QRS detection algorithm. IEEE TBME, 3:230–236, 1985. [3] M. Abdelazez, P. Quesnel,

MachineLearningfor thePredictionofAutonomicNervousSystemResponseduringVirtualRealityTreatmentusingBiometricData

Alistair Boyle1,2, Andrew Smith1,2, Roger Selzler1, François Charih1, Janet Holly2, Courtney Bridgewater2,Markus Besemann3, Dorothyann Curran2, Adrian D. C. Chan1, James R. Green1

1 Carleton University, Ottawa, Canada; 2 The Ottawa Hospital Rehab Centre, Ottawa, Canada;3 Canadian Forces, Health Services

[email protected]

We aim to improve the understanding and clinicalmanagement of Canadian Forces service membersand veterans suffering concussion, complex pain,and PTSD using machine learning techniques ondata collected from virtual reality treatment ses-sions at The Ottawa Hospital Rehab Centre.

Strategy and FeaturesAt this point in the study the available data are limited: there are few patients and their time under treatment tends to be short. To make the most of thisbiometric data, we extract features reflecting typical biomechanical measures of stability (Centre of Pressure) using force plate data, heart rate variabilityand breathing rate from ECG, and approximate joint angles from 3D motion capture. These data form a time series which are used as inputs for machinelearning. With more data available, it may be possible to perform machine learning directly on input data without extensive feature extraction.The clinician observations, actively collected during patient treatment, are used to identify regions of elevated SAANS response. These regions are usedin training a neural network to identify symptoms of elevated SAANS response in the biometric data.With a trained predictor of SAANS response, biometric data can be processed in a computational pipeline and fed to the predictor to provide a delayedonline predictor of SAANS response without clinician intervention.

IntroductionMild traumatic brain injury (concussion), complex pain, and post-traumatic stress disorder (PTSD) are associated with heightened sym-pathetic activation of the autonomic nervous system (SAANS, “fight orflight response”). In Canadian Forces members and veterans, these con-ditions often occur as a triad (polytrauma), posing clinical challenges intheir treatment and management. At The Ottawa Hospital RehabilitationCentre, a key technique for treatment employs a Computer Assisted Reha-bilitation Environment (CAREN) facility; allowing patients to experiencemotion and interact with a virtual environment.Treatment occurs under the direct supervision of the treating clinician andrequires a high degree of experience and training to achieve appropriatepatient exposure. Our study aims to capture, analyze and eventually pro-vide “live” feedback to clinicians on patients’ SAANS response throughminimally intrusive capture and analysis of biometric data that are nottypically recorded, using machine learning techniques and cloud comput-ing resources.

MethodologyPatients are currently being recruited with a target of 60 patients overthe 2 year study. Heart rate, breathing, and movement (acceleration) arecaptured from the Zephyr Biopatch HP (Medtronic). Time series for 3Dmotion capture (VICON), force plates under the treadmills, and the con-figuration of the simulated environment, CAREN hardware and D-Flowsoftware (MotekForce Link), are stored for each session. Clinicians use atablet-based custom app to record their observations of SAANS signs andsymptoms, administer the simulator sickness questionnaire (SSQ), andrecord comments and common events, all time- stamped and uploaded tothe cloud servers (SOSCIP/IBM).Study clinicians collect data from 3–6 activities lasting 15–300s (typical)over each 1h treatment session. Data are processed to compute features,largely focused on measures of variability. These features are used to(a) develop patient-specific models of pre-treatment baseline, and (b) tocapture deviations from these patient-specific models during treatmentand report the patient state to the clinician.

ResultsPatient recruitment and healthy volunteer data collection are underway. Cloud resources (SOSCIP, https://saans.ca) are online and undercontinuous development. Analysis of the available data and neural network performance against our clinician “gold standard” is ongoing.

ConclusionWe expect that development of these data-based, observational techniques will be an important tool in training new clinicians, and improving patientoutcomes by rapidly and consistently identifying changes in patient SAANS signs and symptoms to clinicians. This information may enable earlyreporting of over or under treatment and offers additional opportunities for dynamically tailored patient-specific therapy.

We gratefully acknowledge our partners: CIMVHR, Mitacs, IBM, and SOSCIP.

Ethics Approval: This study was approved by the research ethics boards of both the Ottawa Hospital and Carleton University.

Quick FactsControl Subjects 8 ✓Patients 5 of 60Study End Date July 2020

Stimulus Clinician TreatmentCAREN VR

Biometric Data ECG, Force Plates heart rate, breathing3D Motion Capture movement, balance

Observations Tablet SSQ, signs & symptoms

References[1] H. Fawaz, G. Forestier, J. Weber, L. Idoumghar, and P.-A. Muller. Deep learning for time

series classification: a review. Data Mining and Knowledge Discovery, 33(4):917–963,2019.

[2] J. Pan and W. Tompkins. A real-time QRS detection algorithm. IEEE TBME, 3:230–236,1985.

[3] M. Abdelazez, P. Quesnel, A. D. C. Chan, and H. Yang. Signal quality analysis ofambulatory electrocardiograms to gate false myocardial ischemia alarms. IEEE TBME,64(6):1318–1325, 2017.

Rehabilitation Virtual Reality Lab

control station 6-dof platform +dual treadmill +

force plates

180° immersiveVR screen

Vicon 3Dmotion capture

heart ratesensor

engineer

clincian

patient

The Ottawa HospitalRehabilitation Centre

bio

metric data

webserversecure and

encryptedaccess

- public website- secure, anonymized data upload

https://saans.ca

- data processing- machine learning- data visualizationcontrol &

analysis

24 core virtual machine, memory and storageallocated exclusively for our project; can bere-provisioned or extended as project needs evolve

internet backendserver

estimatedSAANS

Machine LearningDeep Neural Network

clinicianassistdata

Treatment Outcome

Target Zone

induced neuroplastic change

Underexposure

insufficient stimulation

Overexposure

too much stimulationrapid symptom escalation

adverse progress

Figure 1: Biometric data collected during treatment is processed on cloud servers where machine learning is used to predict SAANS response. The predictedSAANS response can eventually be used to improve patient care by better targeting the ideal treatment zone. The predictor may also be used to support clinician trainingin detecting patient’s SAANS response.

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Figure 2: Processed biometric data: ECG to Heart Rate Variability, force plates to Centre of Pressure, and markers to “skeleton” motion.