large-scale integration of data and text
TRANSCRIPT
![Page 1: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/1.jpg)
Large-scale integration of data and text
Lars Juhl Jensen
![Page 2: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/2.jpg)
Large-scale integration of data and text
Lars Juhl Jensen
![Page 3: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/3.jpg)
association networks
![Page 4: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/4.jpg)
text mining
![Page 5: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/5.jpg)
localization and diseases
![Page 6: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/6.jpg)
me
![Page 7: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/7.jpg)
![Page 8: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/8.jpg)
![Page 9: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/9.jpg)
promoter analysis
![Page 10: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/10.jpg)
Jensen & Knudsen, Bioinformatics, 2000
![Page 11: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/11.jpg)
function prediction
![Page 12: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/12.jpg)
Jensen, Gupta et al., Journal of Molecular Biology, 2002
![Page 13: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/13.jpg)
![Page 14: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/14.jpg)
![Page 15: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/15.jpg)
protein networks
![Page 16: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/16.jpg)
de Lichtenberg, Jensen et al., Science, 2005
![Page 17: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/17.jpg)
chemoinformatics
![Page 18: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/18.jpg)
Campillos, Kuhn et al., Science, 2008
![Page 19: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/19.jpg)
![Page 20: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/20.jpg)
![Page 21: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/21.jpg)
![Page 22: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/22.jpg)
![Page 23: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/23.jpg)
data mining
![Page 24: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/24.jpg)
text mining
![Page 25: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/25.jpg)
electronic health records
![Page 26: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/26.jpg)
association networks
![Page 27: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/27.jpg)
guilt by association
![Page 28: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/28.jpg)
![Page 29: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/29.jpg)
STRING
![Page 30: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/30.jpg)
~2.6 million proteins
![Page 31: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/31.jpg)
Szklarczyk, Franceschini et al., Nucleic Acids Research, 2011
![Page 32: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/32.jpg)
STITCH
![Page 33: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/33.jpg)
~300,000 small molecules
![Page 34: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/34.jpg)
Kuhn et al., Nucleic Acids Research, 2012
![Page 35: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/35.jpg)
genomic context
![Page 36: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/36.jpg)
gene fusion
![Page 37: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/37.jpg)
Korbel et al., Nature Biotechnology, 2004
![Page 38: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/38.jpg)
operons
![Page 39: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/39.jpg)
Korbel et al., Nature Biotechnology, 2004
![Page 40: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/40.jpg)
bidirectional promoters
![Page 41: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/41.jpg)
Korbel et al., Nature Biotechnology, 2004
![Page 42: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/42.jpg)
metagenome neighborhood
![Page 43: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/43.jpg)
Harrington et al., PNAS, 2007
![Page 44: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/44.jpg)
phylogenetic profiles
![Page 45: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/45.jpg)
Korbel et al., Nature Biotechnology, 2004
![Page 46: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/46.jpg)
a real example
![Page 47: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/47.jpg)
![Page 48: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/48.jpg)
![Page 49: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/49.jpg)
![Page 50: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/50.jpg)
Cell
Cellulosomes
Cellulose
![Page 51: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/51.jpg)
experimental data
![Page 52: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/52.jpg)
gene coexpression
![Page 53: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/53.jpg)
![Page 54: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/54.jpg)
protein interactions
![Page 55: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/55.jpg)
Jensen & Bork, Science, 2008
![Page 56: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/56.jpg)
curated knowledge
![Page 57: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/57.jpg)
drug targets
![Page 58: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/58.jpg)
complexes
![Page 59: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/59.jpg)
pathways
![Page 60: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/60.jpg)
Letunic & Bork, Trends in Biochemical Sciences, 2008
![Page 61: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/61.jpg)
many databases
![Page 62: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/62.jpg)
different formats
![Page 63: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/63.jpg)
different identifiers
![Page 64: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/64.jpg)
variable quality
![Page 65: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/65.jpg)
not comparable
![Page 66: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/66.jpg)
hard work
![Page 67: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/67.jpg)
quality scores
![Page 68: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/68.jpg)
von Mering et al., Nucleic Acids Research, 2005
![Page 69: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/69.jpg)
calibrate vs. gold standard
![Page 70: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/70.jpg)
missing most of the data
![Page 71: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/71.jpg)
text mining
![Page 72: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/72.jpg)
>10 km
![Page 73: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/73.jpg)
too much to read
![Page 74: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/74.jpg)
computer
![Page 75: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/75.jpg)
as smart as a dog
![Page 76: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/76.jpg)
teach it specific tricks
![Page 77: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/77.jpg)
![Page 78: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/78.jpg)
![Page 79: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/79.jpg)
named entity recognition
![Page 80: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/80.jpg)
comprehensive lexicon
![Page 81: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/81.jpg)
cyclin dependent kinase 1
![Page 82: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/82.jpg)
CDK1
![Page 83: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/83.jpg)
CDC2
![Page 84: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/84.jpg)
flexible matching
![Page 85: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/85.jpg)
spaces and hyphens
![Page 86: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/86.jpg)
cyclin dependent kinase 1
![Page 87: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/87.jpg)
cyclin-dependent kinase 1
![Page 88: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/88.jpg)
orthographic variation
![Page 89: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/89.jpg)
CDC2
![Page 90: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/90.jpg)
hCdc2
![Page 91: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/91.jpg)
“black list”
![Page 92: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/92.jpg)
SDS
![Page 93: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/93.jpg)
information extraction
![Page 94: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/94.jpg)
count co-mentioning
![Page 95: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/95.jpg)
within documents
![Page 96: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/96.jpg)
within paragraphs
![Page 97: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/97.jpg)
within sentences
![Page 98: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/98.jpg)
scoring scheme
![Page 99: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/99.jpg)
![Page 100: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/100.jpg)
![Page 101: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/101.jpg)
corpora
![Page 102: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/102.jpg)
~22 million abstracts
![Page 103: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/103.jpg)
no access
![Page 104: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/104.jpg)
~4 million full-text articles
![Page 105: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/105.jpg)
![Page 106: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/106.jpg)
augmented browsing
![Page 107: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/107.jpg)
Reflect
![Page 108: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/108.jpg)
browser add-on
![Page 109: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/109.jpg)
real-time text mining
![Page 110: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/110.jpg)
Pafilis, O’Donoghue, Jensen et al., Nature Biotechnology, 2009O’Donoghue et al., Journal of Web Semantics, 2010
![Page 111: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/111.jpg)
localization and disease
![Page 112: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/112.jpg)
small molecules
![Page 113: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/113.jpg)
proteins
![Page 114: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/114.jpg)
compartments
![Page 115: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/115.jpg)
tissues
![Page 116: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/116.jpg)
diseases
![Page 117: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/117.jpg)
organisms
![Page 118: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/118.jpg)
environments
![Page 119: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/119.jpg)
suite of web resources
![Page 120: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/120.jpg)
common backend database
![Page 121: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/121.jpg)
jensenlab.org
![Page 122: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/122.jpg)
text mining
![Page 123: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/123.jpg)
curated knowledge
![Page 124: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/124.jpg)
experimental data
![Page 125: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/125.jpg)
computational predictions
![Page 126: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/126.jpg)
quality scores
![Page 127: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/127.jpg)
web-centric databases
![Page 128: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/128.jpg)
DISEASES
![Page 129: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/129.jpg)
![Page 130: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/130.jpg)
![Page 131: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/131.jpg)
visualization
![Page 132: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/132.jpg)
COMPARTMENTS
![Page 133: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/133.jpg)
compartments.jensenlab.org
![Page 134: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/134.jpg)
TISSUES
![Page 135: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/135.jpg)
tissues.jensenlab.org
![Page 136: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/136.jpg)
project onto networks
![Page 137: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/137.jpg)
Szklarczyk, Franceschini et al., Nucleic Acids Research, 2011
![Page 138: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/138.jpg)
compartments.jensenlab.org
![Page 139: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/139.jpg)
tissues.jensenlab.org
![Page 140: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/140.jpg)
diseases.jensenlab.org
![Page 141: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/141.jpg)
summary
![Page 142: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/142.jpg)
bioinformatics
![Page 143: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/143.jpg)
more than alignment
![Page 144: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/144.jpg)
data/text mining
![Page 145: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/145.jpg)
save you much time
![Page 146: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/146.jpg)
Acknowledgments
STRING/STITCHChristian von Mering
Damian Szklarczyk
Michael Kuhn
Manuel Stark
Samuel Chaffron
Chris Creevey
Jean Muller
Tobias Doerks
Philippe Julien
Alexander Roth
Milan Simonovic
Jan Korbel
Berend Snel
Martijn Huynen
Peer Bork
Literature miningSune Frankild
Evangelos Pafilis
Janos Binder
Kalliopi Tsafou
Alberto Santos
Heiko Horn
Michael Kuhn
Nigel Brown
Reinhardt Schneider
Sean O’Donoghue
![Page 147: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/147.jpg)
![Page 148: Large-scale integration of data and text](https://reader037.vdocuments.site/reader037/viewer/2022110118/554e8adcb4c905fc368b48c0/html5/thumbnails/148.jpg)
Questions?