lab 21 goals and objectives: exercise 59: bacteriological examination of water confirmed test: check...
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Lab 21 Goals and Objectives:
Exercise 59: Bacteriological Examination of WaterConfirmed Test: check EMB plate for coliforms
EDVOKIT#300: Blue/White Cloning of a DNA FragmentTransform E. coli with your ligation reactions (pg 12-13)Each group will need:
0.5-10µl and 100-1000µl micropipettorsTips: large and small2-1.5ml tubes containing pellets of E. coli on iceCaCl2 on iceRB (recovery broth)2 tubes of glass beads2 plates (nutrient agar with Amp, X-gal and IPTG)
HOMEWORK: calculate the recipe for PCR reactions to be set up in the next lab. See the supplemental handout in the packet page 89!
Ligation
Transformation
EDVO page 6
Experiment Overview
Vector + gene we want to clone + ligase
~incubate~
Two possible products:-gene ligated into
vector -vector religated
without gene
Transform into E.coli
*gene ligated into vector -disrupts LacZ gene, -no gal enzyme, -colonies white
*vector religated without gene -has intact LacZ gene, -produces gal enzyme, -Xgal gets hydrolyzed, -colonies turn blue
Plate E.coli on medium containing:
-Amp: select for transformed cells
-Xgal: turns blue when hydrolyzed by gal enzyme
-IPTG: induces promoter
Edvo pg 12-13
C1
Concentration of stock
solution or reagent:
X stock or mM/µM stock
indicated
V1
How much of the stock
reagent you need: this is what you are solving for!
in µl
C2
Concentration of the reagent
in the final solution:
1X or mM/µM concentration
indicated
V2
Volume of the final solution:
in µl
PCR reactions are 50µl
C1 X V1 = C2 X V2 Solve for V1
V1 = (C2 X V2) ÷ C1
V1 µl = (final conc. X 50µl) ÷ stock conc.
C1 X V1 = C2 X V2