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RESPIRATORY AND CRITICAL CARE MEDICINE ® An official journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine www.thoracic.org Vol 192 | No 3 | August 1 2015 ORIGINAL ARTICLES Disease Progression and Changes in Physical Activity in Patients with Chronic Obstructive Pulmonary Disease (See page 295) Mechanical Stress Induces Lung Fibrosis via the Midkine Signaling Pathway (See page 315) Ozone, Fine Particulate Matter, and Chronic Lower Respiratory Disease Mortality in the United States (See page 337) RNA Sequencing Analysis Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension (See page 356) T-SPOT.TB Interferon- Release Assay Performance in Healthcare Worker Screening at Nineteen U.S. Hospitals (See page 367) AMERICAN THORACIC SOCIETY DOCUMENTS An Official American Thoracic Society Research Statement: Current Understanding and Future Research Needs in Tobacco Control and Treatment (See page 374) IN THIS ISSUE VOLUME 192 NUMBER 3 AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE AUGUST 1 2015 (267–402) American Journal of RESPIRATORY CELL AND MOLECULAR BIOLOGY ® An official journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine www.thoracic.org Vol 53 | No 1 | July 2015 American Journal of VOLUME 53 NUMBER 1 AM SUBSCRIPTIONS

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Page 1: l of - ATS JournalsAMERICAN THORACIC SOCIETY DOCUMENTS An Offi cial American Thoracic Society ent ch ol and eatment (See page 374) IN THIS ISSUE AND CRITICAL CARE MEDICINE (267–402)

RESPIRATORY ANDCRITICAL CARE MEDICINE

®

An offi cial journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.orgVol 192 | No 3 | August 1 2015

ORIGINAL ARTICLESDisease Progression and Changes in Physical Activity in Patients with Chronic Obstructive Pulmonary Disease (See page 295)

Mechanical Stress Induces Lung Fibrosis via the Midkine Signaling Pathway (See page 315)

Ozone, Fine Particulate Matter, and Chronic Lower Respiratory Disease Mortality in the United States (See page 337)

RNA Sequencing Analysis Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension (See page 356)

T-SPOT.TB Interferon- Release Assay Performance in Healthcare Worker Screening at Nineteen U.S. Hospitals (See page 367)

AMERICAN THORACIC SOCIETY DOCUMENTSAn Offi cial American Thoracic Society

Research Statement: Current Understanding and Future Research Needs in Tobacco Control and Treatment (See page 374)

IN THIS ISSUE

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American Journal of

Ad to be inserted RESPIRATORY CELL

AND MOLECULAR BIOLOGY

®

An official journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.org

Vol 53 | No 1 | July 2015

IN THIS ISSUE

American Journal of

V

OLU

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53

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BIO

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JULY

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13

4)

TABLE OF CONTENTSRED ALERT

i July Highlights/Papers by Junior Investigators/NIH News

ATS DISCOVERIES SERIES

1 Alveolar Development and DiseaseJeffrey A. Whitsett and Timothy E. Weaver

TRANSLATIONAL REVIEW

8 Noninvasive Imaging of Experimental Lung FibrosisYong Zhou, Huaping Chen, Namasivayam Ambalavanan, Gang Liu, Veena B. Antony, Qiang Ding, Hrudaya Nath, Janet F. Eary, and Victor J. Thannickal

MAJOR TECHNICAL ADVANCES14 High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression

Facilitates Cellular Identifi cation, Tracking, and IsolationJeff N. Vanderbilt, Robert F. Gonzalez, Lennell Allen, AnneMarie Gillespie, David Leaffer, Willow B. Dean, Cheryl Chapin, and Leland G. Dobbs [Supplement online at www.atsjournals.org]

RAPID COMMUNICATIONS

22 Quantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial SecretomeJennifer R. Peters-Hall, Kristy J. Brown, Dinesh K. Pillai, Amarel Tomney, Lindsay M. Garvin, Xiaofang Wu, and Mary C. Rose [Supplement online at www.atsjournals.org]

33 Tuberous Sclerosis Complex 2 Loss Increases Lysophosphatidylcholine Synthesis in LymphangioleiomyomatosisCarmen Priolo, Stéphane J. H. Ricoult, Damir Khabibullin, Harilaos Filippakis, Jane Yu, Brendan D. Manning, Clary Clish, and Elizabeth P. Henske[Supplement online at www.atsjournals.org]

ORIGINAL RESEARCH

42 Regulator of G-Protein Signaling 2 Repression Exacerbates Airway Hyper-Responsiveness and Remodeling in AsthmaHaihong Jiang, Yan Xie, Peter W. Abel, Dennis W. Wolff, Myron L. Toews, Reynold A. Panettieri, Jr., Thomas B. Casale, and Yaping Tu [Supplement online at www.atsjournals.org]

50 Molecular Imaging of Folate Receptor β–Positive Macrophages during Acute Lung Infl ammationWei Han, Rinat Zaynagetdinov, Fiona E. Yull, Vasiliy V. Polosukhin, Linda A. Gleaves, Harikrishna Tanjore, Lisa R. Young, Todd E. Peterson, H. Charles Manning, Lawrence S. Prince, and Timothy S. Blackwell [Supplement online at www.atsjournals.org]

60 Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar SeptationAlain Cuna, Brian Halloran, Ona Faye-Petersen, David Kelly, David K. Crossman, Xiangqin Cui, Kusum Pandit, Naftali Kaminski, Soumyaroop Bhattacharya, Ausaf Ahmad, Thomas J. Mariani, and Namasivayam Ambalavanan [Supplement online at www.atsjournals.org]

American Journal of Respiratory Cell and Molecular Biology Vol. 53 No. 1 | July 2015ISSN 1535-4989

AJRCMB HIGHLIGHTS

ON THE COVER

Alveolar Development and DiseaseWhitsett and Weaver, p. 1

The cover image is modifi ed from Figure 6 in the article by Romero and colleagues, beginning on page 74.

High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and IsolationVanderbilt et al., p. 14

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of LymphangioleiomyomatosisAtochina-Vasserman et al., p. 96

(Continued on inside cover)

ATS DISCOVERIES SERIESAlveolar Development and Disease (See page 1)

TRANSLATIONAL REVIEWNoninvasive Imaging of Experimental Lung Fibrosis (See page 8)

MAJOR TECHNICAL ADVANCESHigh-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and Isolation (See page 14)

RAPID COMMUNICATIONSQuantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial Secretome (See page 22)

ORIGINAL RESEARCHA Pneumocyte–Macrophage Paracrine Lipid Axis Drives the Lung toward Fibrosis (See page 74)

Suppression of Epithelial Signal Transducer and Activator of Transcription 1 Activation by Extracts of Aspergillus fumigatus (See page 87)

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of Lymphangioleiomyomatosis (See page 96)

SUBSCRIPTIONS

Page 2: l of - ATS JournalsAMERICAN THORACIC SOCIETY DOCUMENTS An Offi cial American Thoracic Society ent ch ol and eatment (See page 374) IN THIS ISSUE AND CRITICAL CARE MEDICINE (267–402)

The ATS Journals collectively cover the entire spectrum of adult and pediatric pulmonary, critical care, and sleep medicine—from bench to bedside.•Researchersappreciatethejournals’emphasison

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Join the ATS today!Memberbenefitsinclude:•Subscriptionstoallthreejournals•Discountsonconferences,educationalprograms,

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Get More from the ATS Journals

RESPIRATORY CELLAND MOLECULAR BIOLOGY

®

An official journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.org

Vol 53 | No 1 | July 2015

IN THIS ISSUE

American Journal of

V

OLU

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53

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1

AM

ER

ICA

N JO

UR

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PIR

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D M

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CU

LAR

BIO

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JULY

2

01

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(1–

13

4)

TABLE OF CONTENTSRED ALERT

i July Highlights/Papers by Junior Investigators/NIH News

ATS DISCOVERIES SERIES

1 Alveolar Development and DiseaseJeffrey A. Whitsett and Timothy E. Weaver

TRANSLATIONAL REVIEW

8 Noninvasive Imaging of Experimental Lung FibrosisYong Zhou, Huaping Chen, Namasivayam Ambalavanan, Gang Liu, Veena B. Antony, Qiang Ding, Hrudaya Nath, Janet F. Eary, and Victor J. Thannickal

MAJOR TECHNICAL ADVANCES

14 High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and IsolationJeff N. Vanderbilt, Robert F. Gonzalez, Lennell Allen, AnneMarie Gillespie, David Leaffer, Willow B. Dean, Cheryl Chapin, and Leland G. Dobbs [Supplement online at www.atsjournals.org]

RAPID COMMUNICATIONS

22 Quantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial SecretomeJennifer R. Peters-Hall, Kristy J. Brown, Dinesh K. Pillai, Amarel Tomney, Lindsay M. Garvin, Xiaofang Wu, and Mary C. Rose [Supplement online at www.atsjournals.org]

33 Tuberous Sclerosis Complex 2 Loss Increases Lysophosphatidylcholine Synthesis in LymphangioleiomyomatosisCarmen Priolo, Stéphane J. H. Ricoult, Damir Khabibullin, Harilaos Filippakis, Jane Yu, Brendan D. Manning, Clary Clish, and Elizabeth P. Henske[Supplement online at www.atsjournals.org]

ORIGINAL RESEARCH

42 Regulator of G-Protein Signaling 2 Repression Exacerbates Airway Hyper-Responsiveness and Remodeling in AsthmaHaihong Jiang, Yan Xie, Peter W. Abel, Dennis W. Wolff, Myron L. Toews, Reynold A. Panettieri, Jr., Thomas B. Casale, and Yaping Tu [Supplement online at www.atsjournals.org]

50 Molecular Imaging of Folate Receptor β–Positive Macrophages during Acute Lung Infl ammationWei Han, Rinat Zaynagetdinov, Fiona E. Yull, Vasiliy V. Polosukhin, Linda A. Gleaves, Harikrishna Tanjore, Lisa R. Young, Todd E. Peterson, H. Charles Manning, Lawrence S. Prince, and Timothy S. Blackwell [Supplement online at www.atsjournals.org]

60 Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar SeptationAlain Cuna, Brian Halloran, Ona Faye-Petersen, David Kelly, David K. Crossman, Xiangqin Cui, Kusum Pandit, Naftali Kaminski, Soumyaroop Bhattacharya, Ausaf Ahmad, Thomas J. Mariani, and Namasivayam Ambalavanan [Supplement online at www.atsjournals.org]

American Journal of Respiratory Cell and Molecular Biology Vol. 53 No. 1 | July 2015ISSN 1535-4989

AJRCMB HIGHLIGHTS

ON THE COVER

Alveolar Development and DiseaseWhitsett and Weaver, p. 1

The cover image is modifi ed from Figure 6 in the article by Romero and colleagues, beginning on page 74.

High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and IsolationVanderbilt et al., p. 14

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of LymphangioleiomyomatosisAtochina-Vasserman et al., p. 96

(Continued on inside cover)

ATS DISCOVERIES SERIESAlveolar Development and Disease (See page 1)

TRANSLATIONAL REVIEWNoninvasive Imaging of Experimental Lung Fibrosis (See page 8)

MAJOR TECHNICAL ADVANCESHigh-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and Isolation (See page 14)

RAPID COMMUNICATIONSQuantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial Secretome (See page 22)

ORIGINAL RESEARCHA Pneumocyte–Macrophage Paracrine Lipid Axis Drives the Lung toward Fibrosis (See page 74)

Suppression of Epithelial Signal Transducer and Activator of Transcription 1 Activation by Extracts of Aspergillus fumigatus (See page 87)

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of Lymphangioleiomyomatosis (See page 96)

RESPIRATORY ANDCRITICAL CARE MEDICINE

®

An offi cial journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.org

Vol 192 | No 3 | August 1 2015

ORIGINAL ARTICLESDisease Progression and Changes in Physical Activity in Patients with Chronic Obstructive Pulmonary Disease (See page 295)

Mechanical Stress Induces Lung Fibrosis via the Midkine Signaling Pathway (See page 315)

Ozone, Fine Particulate Matter, and Chronic Lower Respiratory Disease Mortality in the United States (See page 337)

RNA Sequencing Analysis Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension (See page 356)

T-SPOT.TB Interferon- Release Assay Performance in Healthcare Worker Screening at Nineteen U.S. Hospitals (See page 367)

AMERICAN THORACIC SOCIETY DOCUMENTSAn Offi cial American Thoracic Society Research Statement: Current Understanding and Future Research Needs in Tobacco Control and Treatment (See page 374)

IN THIS ISSUE

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American Journal of

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Page 3: l of - ATS JournalsAMERICAN THORACIC SOCIETY DOCUMENTS An Offi cial American Thoracic Society ent ch ol and eatment (See page 374) IN THIS ISSUE AND CRITICAL CARE MEDICINE (267–402)

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RESPIRATORY ANDCRITICAL CARE MEDICINE

®

An offi cial journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.org

Vol 192 | No 3 | August 1 2015

ORIGINAL ARTICLESDisease Progression and Changes in Physical Activity in Patients with Chronic Obstructive Pulmonary Disease (See page 295)

Mechanical Stress Induces Lung Fibrosis via the Midkine Signaling Pathway (See page 315)

Ozone, Fine Particulate Matter, and Chronic Lower Respiratory Disease Mortality in the United States (See page 337)

RNA Sequencing Analysis Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension (See page 356)

T-SPOT.TB Interferon- Release Assay Performance in Healthcare Worker Screening at Nineteen U.S. Hospitals (See page 367)

AMERICAN THORACIC SOCIETY DOCUMENTSAn Offi cial American Thoracic Society Research Statement: Current Understanding and Future Research Needs in Tobacco Control and Treatment (See page 374)

IN THIS ISSUE

V

OLU

ME 1

92

NU

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AU

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02

)

American Journal of

Ad to be inserted

RESPIRATORY CELLAND MOLECULAR BIOLOGY

®

An official journal of the American Thoracic Society / Advancing Pulmonary, Critical Care and Sleep Medicine

www.thoracic.org

Vol 53 | No 1 | July 2015

IN THIS ISSUE

American Journal of

V

OLU

ME

53

NU

MB

ER

1

AM

ER

ICA

N JO

UR

NA

L OF R

ES

PIR

ATO

RY

CE

LL AN

D M

OLE

CU

LAR

BIO

LOG

Y

JULY

2

01

5

(1–

13

4)

TABLE OF CONTENTSRED ALERT

i July Highlights/Papers by Junior Investigators/NIH News

ATS DISCOVERIES SERIES

1 Alveolar Development and DiseaseJeffrey A. Whitsett and Timothy E. Weaver

TRANSLATIONAL REVIEW

8 Noninvasive Imaging of Experimental Lung FibrosisYong Zhou, Huaping Chen, Namasivayam Ambalavanan, Gang Liu, Veena B. Antony, Qiang Ding, Hrudaya Nath, Janet F. Eary, and Victor J. Thannickal

MAJOR TECHNICAL ADVANCES

14 High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and IsolationJeff N. Vanderbilt, Robert F. Gonzalez, Lennell Allen, AnneMarie Gillespie, David Leaffer, Willow B. Dean, Cheryl Chapin, and Leland G. Dobbs [Supplement online at www.atsjournals.org]

RAPID COMMUNICATIONS

22 Quantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial SecretomeJennifer R. Peters-Hall, Kristy J. Brown, Dinesh K. Pillai, Amarel Tomney, Lindsay M. Garvin, Xiaofang Wu, and Mary C. Rose [Supplement online at www.atsjournals.org]

33 Tuberous Sclerosis Complex 2 Loss Increases Lysophosphatidylcholine Synthesis in LymphangioleiomyomatosisCarmen Priolo, Stéphane J. H. Ricoult, Damir Khabibullin, Harilaos Filippakis, Jane Yu, Brendan D. Manning, Clary Clish, and Elizabeth P. Henske[Supplement online at www.atsjournals.org]

ORIGINAL RESEARCH

42 Regulator of G-Protein Signaling 2 Repression Exacerbates Airway Hyper-Responsiveness and Remodeling in AsthmaHaihong Jiang, Yan Xie, Peter W. Abel, Dennis W. Wolff, Myron L. Toews, Reynold A. Panettieri, Jr., Thomas B. Casale, and Yaping Tu [Supplement online at www.atsjournals.org]

50 Molecular Imaging of Folate Receptor β–Positive Macrophages during Acute Lung Infl ammationWei Han, Rinat Zaynagetdinov, Fiona E. Yull, Vasiliy V. Polosukhin, Linda A. Gleaves, Harikrishna Tanjore, Lisa R. Young, Todd E. Peterson, H. Charles Manning, Lawrence S. Prince, and Timothy S. Blackwell [Supplement online at www.atsjournals.org]

60 Alterations in Gene Expression and DNA Methylation during Murine and Human Lung Alveolar SeptationAlain Cuna, Brian Halloran, Ona Faye-Petersen, David Kelly, David K. Crossman, Xiangqin Cui, Kusum Pandit, Naftali Kaminski, Soumyaroop Bhattacharya, Ausaf Ahmad, Thomas J. Mariani, and Namasivayam Ambalavanan [Supplement online at www.atsjournals.org]

American Journal of Respiratory Cell and Molecular Biology Vol. 53 No. 1 | July 2015ISSN 1535-4989

AJRCMB HIGHLIGHTS

ON THE COVER

Alveolar Development and DiseaseWhitsett and Weaver, p. 1

The cover image is modifi ed from Figure 6 in the article by Romero and colleagues, beginning on page 74.

High-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and IsolationVanderbilt et al., p. 14

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of LymphangioleiomyomatosisAtochina-Vasserman et al., p. 96

(Continued on inside cover)

ATS DISCOVERIES SERIESAlveolar Development and Disease (See page 1)

TRANSLATIONAL REVIEWNoninvasive Imaging of Experimental Lung Fibrosis (See page 8)

MAJOR TECHNICAL ADVANCESHigh-Effi ciency Type II Cell–Enhanced Green Fluorescent Protein Expression Facilitates Cellular Identifi cation, Tracking, and Isolation (See page 14)

RAPID COMMUNICATIONSQuantitative Proteomics Reveals an Altered Cystic Fibrosis In Vitro Bronchial Epithelial Secretome (See page 22)

ORIGINAL RESEARCHA Pneumocyte–Macrophage Paracrine Lipid Axis Drives the Lung toward Fibrosis (See page 74)

Suppression of Epithelial Signal Transducer and Activator of Transcription 1 Activation by Extracts of Aspergillus fumigatus (See page 87)

Surfactant Dysfunction and Lung Infl ammation in the Female Mouse Model of Lymphangioleiomyomatosis (See page 96)

Get More from the ATS Journals

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Page 4: l of - ATS JournalsAMERICAN THORACIC SOCIETY DOCUMENTS An Offi cial American Thoracic Society ent ch ol and eatment (See page 374) IN THIS ISSUE AND CRITICAL CARE MEDICINE (267–402)

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Placing an Order

To place a subscription order for any ATS publication, please make sure to include the informationoutlinedbelow.Paymentsbycheckandcreditcardareaccepted.Ifawiretransfer is required, please contact us at subscriptions@thoracic.org.1.Nameofthepublication2.Institutionaladministrator information,including:

a.Firstandlastname,title b.Emailaddress c. Telephone number

3.InstitutionInformation a.Name b.WebsiteURL c.IPaddresses(forsubscription) d.Fullmailingaddress4.Institutiontypefromoneofthefollowing: a. Academic b.Corporate c. Government d.Medical e.Public/nonprofit

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EXCLUSIVE DISTRIBUTORINDIA:RhinoInternationalAgencies will handle all institutional subscriptions, individual subscriptions, and single issue requests for usersintheIndiaterritories.Orders Should Be Sent to:RM/sRhinoInternationalAgencies74,MahavirCentre,Plot77Sector17,Vashi,NaviMumbaiMaharashtraIndia400703P:+912227892627F:+912227892568Email:[email protected]