knime: an update...the knime® trademark and logo and open for innovation® trademark are used by...
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© 2016 KNIME.com AG. All Rights Reserved.
KNIME: an update
Jon Fuller, Ph.D.
ChemAxon Annual Meeting 2016
May 2016
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© 2016 KNIME.com AG. All Rights Reserved. 2
The KNIME® Analytics Platform
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Broad Range of KNIME Application Areas & Customers
Advanced Analytics
Pharma
Health Care
Finance
Retail
Customer Intelligence
Manu-facturing
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Analysis & MiningStatisticsData MiningMachine LearningWeb AnalyticsText MiningNetwork AnalysisSocial Media AnalysisR, Weka, PythonCommunity / 3rd
Data AccessMySQL, Oracle, ...SAS, SPSS, ...Excel, Flat, ...Hive, Impala, ...XML, JSON, PMMLText, Doc, Image, ...Web CrawlersIndustry SpecificCommunity / 3rd
TransformationRow, ColumnMatrixText, ImageTime SeriesJavaPythonCommunity / 3rd
Visualization
R, Python
JFreeChart
JavaScript
Community / 3rd
Deploymentvia BIRTPMMLXML, JSONDatabasesExcel, Flat, etc.Text, Doc, ImageIndustry SpecificCommunity / 3rd
Over 1000 native and embedded nodes included:
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Infocom JChem KNIME Nodes
Extensions of ChemAxon’s tool for KNIME workflow
Infocom implements it with the support of ChemAxon
Contains over 90% of ChemAxon'scheminformatics functionality
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Some typical drug-discovery use cases
• Building, validating, and applying predictive models (e.g. QSAR)
• Virtual screening
• Chemistry experiment planning
• NGS data analysis
• HCS data analysis
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The KNIME Commercial Extensions
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KNIME Software
KNIME commercial extensions to the platform for collaboration, productivity, performance
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KNIME Big Data Architecture
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KNIME Server
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KNIME Server
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Some recent additions
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• Default Execution
• Streaming Execution
– Row-wise
– Process, pass & forget→ Faster with less I/O overhead
– Concurrent execution
Streaming
AdvantagesLess I/O overhead (process, pass & forget)Parallelization
DisadvantagesNo intermediate results, no interactive executionNot all nodes can be streamed
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Streaming – Pros and Cons
Advantages
• Less I/O overhead (process, pass & forget)
• Parallelization
Disadvantages
• No intermediate results, no interactive execution
• Not all nodes can be streamed
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WebPortal
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KNIME Server REST API
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ChemAxon tools and REST API
KNIME ServerHTTP POST
Result
Great for:New method developmentRapid PrototypingIntegrating heterogeneous data
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KNIME Analytics Platform: Try it Now!
1.Download fromwww.knime.com
2.Browse the KNIMELearning Hub atwww.knime.com/learning-hub
3.Check out KNIME Press“KNIME Beginner’s Guide”
4.Become active on our Forum!
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The KNIME® trademark and logo and OPEN FOR INNOVATION® trademark are used by KNIME.com AG under license from KNIME GmbH, and are registered in the United States.
KNIME® is also registered in Germany.