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JCBPS; Section B; August 2016 – October 2016, Vol. 6, No. 4; 1258-1281, E- ISSN: 2249 –1929
Journal of Chemical, Biological and Physical Sciences
An International Peer Review E-3 Journal of Sciences
Available online atwww.jcbsc.org
Section B: Biological Sciences
CODEN (USA): JCBPAT Research Article
1258 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4;1258-1281
Phenological monitoring of cork oak in Kroumirie
(northwest Tunisia)
Kaouther Ben Yahia* 1.4
, Hatem Chaar 2, Salima Bahri
1, Sameh Mhamdi
1.4,
Kamel Soudani 3, Ali Khouaja
4, Brahim Hasnaoui
4
1Laboratoire d’Ecologie forestière, INRGREF, BP10, Ariana, 2080, Tunisia
2 Laboratoire des Ressources Sylvo-pastorales de Tabarka, ISP Tabarka
3 Laboratoire Ecologie Systématique et Evolution, UMR8079, Université Paris-
SudXI, 91405 Orsay, France.
4 Laboratoire des Ressources Sylvo-pastorales de Tabarka, ISP Tabarka.
Received: 21 September 2016; Revised: 08 October 2016; Accepted: 14 October 2016
Abstract: The phenology of Quercus suber L., a dominant sclerophylious
species in northwest Tunisia, was studied for two years at three sites selected
according to altitudinal gradient. The seasonal progression of phenological
events was analyzed on 41 trees in Ain Snoussi, 39 in Bellif and 22 in
Khroufa selected from 1ha plots. Phenological observations about budburst
and flowering were made every week from mid-March to late May, about leaf
fall from January 2010 to the end of December 2011. Litter fall was estimated
at plot level. 35 litter traps were placed every 15 m. Statistical models (linear
logistic model) were used to analyze the following: i) the kinetics of early
bud break and full bud dates (d1 and d2); ii) the beginning and end of
flowering (F0 and FF) and iii) the two leaf fall peaks. Bud break, flowering
and leaf fall showed strong seasonality. The first two phenological phases
(bud and bloom) occurred in the spring while the third took place in both
spring and autumn but with different growth rates. The median dates of early
bud break and full bud estimated from the model showed that cumulative
needs bud burst at higher elevations occurred later than at lower altitudes
assuming that cumulative needs in degree days have been met. Leaf fall is
usually in two phases, presumably explained by the rhythmic nature of the
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1259 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
primary growth of this species, making its kinetics well-fitted to a bi-Richards
model (sum of two Richards-Chapman models). Phase 1 of leaf fall, which
was the most important, is synchronized with budding and flowering. All
these periods have coincided with wet months, during which the trees have
renewed almost 90% of their foliage.
Keywords: Cork oak, phenology, bud burst, flowering, leaf fall, statistical
models
INTRODUCTION
Phenology is the study of periodic phenomena (flowering, leafing, fruit, autumnal yellowing
and leaf fall) in plants. It especially tries to grasp the progress of temporal, spatial and
stational recurrence of these phenomena1,2
and also study the factors that influence 2,3. These
phenomena are genetically predetermined but also strongly modulated by environmental
conditions 4. The main environmental factors affecting these phenomena in plants are
temperature 2, 5,6
, photoperiod and water availability6. Many previous studies
2,7-9 have shown
the effect of temperature on early bud development of temperate forest species and how this
is especially related to early winter and mild spring temperatures and interannual variations.
Studies in boreal and temperate environments 2,10-13
showed that regardless of the species, bud
burst at higher elevations occurred later than at lower altitudes. In addition, these studies
showed that the date of bud break is also correlated to photoperiod. In Mediterranean species,
the date of bud break is determined by temperature, photoperiod and water availability5, 14, 15,
.
In recent decades, climate change observed in many parts of the globe2, 11, 16
could have had a
considerable impact on the phenology and duration of the growing season of plants, and
consequently, on productivity and carbon balance of forest ecosystems 2,17
,18
. The trees,
which cannot react quickly to these changes (especially due to the increase of the
temperature), would become less adapted to their local climate. Thus, in many studies on the
evolution of phenological stages (budding, budbreak, flowering, and leaf fall deciduous
species and conifers, especially in temperate regions13,
19,
20
, were studied to examine the
possible consequences of climate change. Unfortunately, few studies have investigated the
phenology of sclerophyllous species characteristic of the Mediterranean region in natural
conditions, or variations within the population 21
.
The few studies done were also limited to the northern Mediterranean and mainly concerned
cork oak (Quercus suber L.) and holm oak (Q. ilex L.) 5,21-26
, and the phenology of cork oak
seedlings (Q. suber L.), Zeen (Q. canariensis Willd.) and afares (Q. afares Pomel) grown in a
nursery in Tunis, not in situ Mhamdi 27
. El Nennejeh28
was also interested in the study of
phenology and growth of various populations of cork oak under stress conditions in the
nursery, far from their original site. It would be interesting to conduct studies on oak stands,
especially cork oak, a native species, which holds both an ecological as well as economic and
social interest, in its natural habitat in Tunisia (Kroumirie and Mogods).
Given our ignorance of the phenology of cork oak, a Tunisian evergreen species, and the
growing interest of these observations in the context of potential effects of global warming,
the objective of this work is to characterize the phenological events (vegetative buds,
flowering and leaf fall) and their spatiotemporal and individual variability.
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1260 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
MATERIAL AND METHODS
Study zone: The study area is located in nnorthwest Tunisia. Three 1-hectare northern
exposure plots of cork oak from the uneven-aged forests of Bellif, Khroufa and Ain Snoussi
were selected according to an altitudinal gradient to carry out phenological monitoring. All
plots were in a low humidity bioclimatic zone, mild in Bellif and Khroufa and temperate in
Ain Snoussi. A detailed description of the plots is located in Table 1.
Table 1: Characteristics of the three study sites
Site characteristics Ain Snoussi Bellif Khroufa
Latitude 36° 48’23N 37° 02’ 22.8’’N 36°56’33.8’’N
Longitude 008°53’58.6E 009° 04’ 43.6’’E 008°57’39.4E
Altitude (m) 612-633 70 et 110 182-214
Slope (%) 19 13-42 24%
Vegetation
Stem number (stems/ha) 412 237 168
Height (m) 7.18±2,072 12.6±2,163 9.69±2.4107
DBH (cm) 24.5±9,85 40.56±12,84 37.204±14.04
Age (years) - 66 86
basal area (m²/ha) 27.86 27.15 20.83
arboreal stratum Q. suber + Arbutus unedo + Q.
faginea (dominated species)
Q. suber (97.5%) + Q.
faginea (2.5%)
Q. suber (91,7%)+Q. faginea
(8,3%)
Shrub stratums Arbutus unedo, Myrtus
communis
Erica arborea, Myrtus
communis, Phillyrea
angustifolia, Pistacia
lentiscus
Erica arborea, Myrtus
communis, Pistacia lentiscus,
Smilax aspera,Quercus
coccifera
herbaceous stratum annual species Pteridium aquilinum+
annual species
annual species (Briza
maxima)
Soil
Type of soil red soil leached ground red bruned soil brown soil
clay (%) 51.2±18.52 30.75± 10.53 15.75±6.84
Silt (%) 28.25±8.61 32±4.96 14.5±1.732
Sand (%) 17.75±9.74 35.5±6.35 64±7.118
soil texture clayey silty sandy sandy-silt sandy clayey silt
Bed rock clay clay sandstone
%MO 2.25±2.59 1.65±0.51 0.77±0.38
AWC
Maximum available water
content (mm)
128 145.8 126
Da (g/cm3) 1.355±0,109 1.506±0.133 1.679±0.08
The average annual temperature in 2010 and 2011 was 18.04°C, 17.14°C and 12.8°Cin Bellif,
Khroufa and Ain Snoussi, respectively. Over those two years, the average annual rainfall was
1083.9, 1028.2 and 1324.95 mm in Bellif, Khroufa and Ain Snoussi, respectively.
Automatic recording meteorological stations were set up in a forestry center triage located 0.5
km from the study sites. Temperature and precipitation measurements were taken in half hour
increments.
Phenological study: Phenological monitoring was done over a period of two years, 2010
and 2011. The phenological stages (early bud break and full bud, early and late flowering and
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leaf fall) were recorded on 41, 39 and 22 trees in Ain Snoussi, Bellif and Khroufa,
respectively.
Vegetative buds and flower buds were monitored weekly from March 12 until the end of May
during the two seasons in 2010 and 2011. For study stations, observations were made on the
same day by the same observer using binoculars. Buds were observed according to the scale
set by Salmon24
who defined six stages of bud development (Figure 1). Buds were said to
have been observed when they were opened and at least one young leaf or needles had
appeared (D stage). Two dates were identified for the tree as well: 1) the date of early bud
break (when 10% of the crown buds had reached stage D); and 2) the full bud date (when
90% of the crown buds had reached stage D). Bud duration was thus calculated as the
difference between the two dates. For each plot, the two median dates for start of and full bud
break were calculated.
Figure 1: Stages of leaf bud break of Quercus suber L. Stage A bud completely closed; Stage
B, Bud lengthened with no unstuck scales; Stage c, Bud soft starting to detach scales; Stage
C, Bud opened with open scales; Stage D, bud blossomed with already unfolded leaf; Stage
E, Bud crooked, several leaves folded (leaf expansion).
The flowering date was visually identified by the appearance of male and female flowers in
the spring of 2011.
Each study plot was equipped with 35 litter traps (1m²) 29
located every 15 m. These traps
were raised slightly off the ground to avoid contamination 30,
31
. They are used to recover all
the lost parts of trees and shrubs fallen to the ground: leaves, fruits, flowers, bark and twigs.
Pickup was weekly and done the same day as the phenological observation. The litter
collected from each trap was separated into its various components, then left to dry in an oven
at 75°C for 48 hours to constant weight (Figure 2).
Stade DStade C Stade E
Stade B Stade cStade A
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Figure 2: Ombrothermic diagram of Bagnouls and Gaussen (P = 2T) for the two years 2010
and 2011 and the three sites (A) Bellif, (B) Khroufa and (C) Ain Snoussi.
Statistical Analyses: A logistic model was used 32
to analyze the four phenological stages:
(1) early bud break or budburst onset, BBO; (2) full bud or full-budburst, FBB; (3) early
flowering or blossoming onset, BLO; and (4) full-blooming or blossoming, FBI. This model
was used to analyze the proportion of trees p having reached the phenological stage studied.
The link function between the expectation of this proportion π p (between 0 and 1), the linear
predictor formulated from the explanatory variables (site and season, as variables, and time t
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as a quantitative variable, as well as interactions between these variables), is the function
logit (π) = log (π / (1-π)). The linear logistic model used is written as:
p =exp(+' x)
1+exp(' x)..2
log it () = log ='x
1-..1
Where:
Where is the ordinate at the origin (intercept) and = (1....s) is the vector of slope s .
With the logistic model used, the error is assumed to follow the Bernoulli distribution, as the
treated variable is binary (1: Tree having reached the stage in question; 0: otherwise).
The model inflection point is reached at time = T_i -α/β which corresponds to p_i = 0.5. This
is in fact the median (time when 50% of the trees have reached the stage in question).
The asymptote of the model (1) is equal to 1. However, for two stages BLO and FBI
(beginning and full bloom), only a certain percentage of trees have reached these stages
(asymptote is therefore different from 1). To remedy this problem, the model (1) was adjusted
using only the trees having flowered. Asymptotes (different from 1) were estimated from the
ratio number of flowering trees on the total sample trees, and were compared using the linear
logistic model and the site and season as explanatory qualitative variables.
The quality of the adjusted logistic model was assessed using McFadden's pseudo-R2
parameter proposed in 1974:
(3)
Where = Model with predictors
= Model without predictors
= Estimated likelihood.
As for leaf fall, a preliminary review showed that the accumulation of leaf fall over time t
(from January 1st of the current season), expressed in g / m², is usually held in two phases of
sigmoidal shape, sometimes interspersed by a temporary slowdown. This accumulation of
leaf fall over time t cannot be adjusted by a single sigmoidal model, but rather by the sum of
two models; each model adjusting the accumulated leaf fall over time for a single phase. The
preselected individual model (for one phase i) is the Richards-Chapman model because it is
more flexible33
. It can be written as 34
:
(4)
Where A: asymptote, m: shape parameter (sigmoidal curve when it is positive) K: maximum
relative growth rate per unit of time (i.e., slope at an inflection) and T_i: time at the inflection
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point. The inflection point is the point (T_i, Am ^ (1/ ((1-m)))) 34
. The logistic model is a
special case of the Richards-Chapman model where m = 2.
From this model other quantities derived can be estimated: the beginning and end of the leaf
falling phase (time required for there to be a 10% or 90% accumulation of leaf fall of the
asymptotic A), the duration of the leaf fall period (the time interval necessary for there to be
an accumulation of leaf fall between 10 and 90% of the asymptotic A), and the maximum
increase in leaf fall (dy / dt T_i time).
Thus the Bi-Richards model for modeling the accumulation of leaf fall is:
(5)
The correlation measures over time in the traps were taken into account by specifying the
structure of the covariance matrix of the residues R (type AR (n)) 35
.
The quality of the adjustment of the model (5) was evaluated using: 1) the Pseudo coefficient
of determination (R2), 2) the Pseudo adjusted coefficient of determination (adjusted R2) and
3) error (Root Mean Square Error, RMSE), where:
(6)
(7)
(8)
Where yobs and ypréd are the measured and predicted values of the accumulated leaf fall,
respectively; n: the number of observations; and p: the number of model parameters.
Analyses were performed using the procedures Proc logistic, proc model and Proc nlmixed
SAS version 9.3 36
.
RESULTS
Meteorological data: Average annual temperatures in Ain Snoussi and Bellif were slightly
higher in 2010 (12.96°C and 18.13°C, respectively) than in 2011 (12.57°C and 17.87°C,
respectively) whereas Khroufa remained constant in both seasons (17.11°C and 17.09°C).
However, rainfall was greater in 2011 than 2010 in all three study sites. The rainfall reported
was 1307.81mm, 1003.8 mm and 1014.3 mm in Ain snoussi, Bellif and Khroufa,
respectively, in 2010, while in 2011, it was 1342.1 mm, 1164 mm, and 1042.1 mm in Ain
snoussi, Bellif and Khroufa, respectively.
Over the two years of observation, the rainfall was type AHPE for the Ain Snoussi and Bellif
stations, whereas it was type HAPE in the Khroufa station (Figure 3). Following the
Bagnouls and Gaussen’s Ombrothermic diagram in 2010, drought occurred between June and
August in Ain Snoussi and Khroufa, respectively, and between April and August in Bellif. In
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1265 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
2011, it lasted from May to August in Bellif and Khroufa and from June to August in Ain
Snoussi.
Figure 3: Kinetics of observed dates of the beginning of bud burst (stage d1) (A, Bellif; B,
Khroufa C, Ain Snoussi) and end bud (stage d2) (D Bellif; E, Khroufa; F, Ain Snoussi) of
Quercus suber L. in the three study sites, and adjusted logistic models
Early and full bud (d1 and d2): The analysis of phenological variability was primarily
based on visual observation. A median date was estimated for each site and year, using the
logistic model. This median date represented the date when 50% of the sampled trees were in
the studied stage.
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For both campaigns of observations and for the three stations studied, the early and full bud
for the majority of trees lasted from March to the end of April. Statistical analysis using the
logistic model showed that for the start date of bud burst (d1), there was a site effect, time
effect and a significant interaction year * Site (Table 2). However, there was no significant
effect due to year. As to the date of bud burst (d2), analysis showed significant effects for day
and year and interaction year*site. However, there was no significant site effect or significant
interaction between day * site. The logistic model was adjusted for both dates (d1 and d2)
removing non-significant effects. The goodness of fit was great (McFadden's pseudo-R2 of
0.7257 and 0.5727 for both steps d1 and d2, respectively).
Table 2: Deviance analysis using the logistic model, applied to variables beginning of bud
burst (d1), end of bud break (d2), onset flowering (F0) and end of flowering (FF): pr (chi-
square).
Effets testés d1 d2 F0 FF
Site <0,0001 0,0064 0,0799 0,0925
Time <0,0001 <0,0001 <0,0001 <0,0001
Time x Site <0,0001 0,0038 0,1135 0,0293
Year 0,1871 0,3977 - -
Year x Site <0,0001 < 0,0001 - -
In 2010, the median date of start of bud burst (step d1) estimated from the model was found
to be March 20 (79.04 ± 0.75 j: number of days from January 1, 2010 ± SE) for Bellif and
March 24 (83.30 ± 0.89 j) for Khroufa. This date was a little later at the Ain Snoussi station
(April 8; 97.67 ± 0.70 j) (Table 3). However, there was no significant difference in median
dates for stage d1 between Bellif and Khroufa, although there was a lag of 4.26 ± 1.16 days.
The difference between median dates was very highly significant (p <0.0001) between Ain
Snoussi and Bellif and between Ain Snoussi and Khroufa, and the differences were more
significant (18.62 ± 1.02 d and 14.36 ± 1.13 days, respectively). The value of k rate
(controlling the slope in the middle) at stage d1 was independent of the site, and also of the
year, with a value of 0.3302 ± 0.0197 tree / day (Figures 3A, 3B and 3C). Thus, most of the
trees at the three sites had approximately the same time to reach stage d1.
For the year 2010, the median date of full bud (stage d2) occurred on March 26 (85.93 ± 0.65
j) in Bellif, on April 1 (90.57 ± 0.74 j) in Khroufa and April 17 (107.24 ± 0.91 j) in Ain
Snoussi. Although these dates seem very close together, there were very highly significant
differences between them (p <0.0001). The value of k rate (controlling the slope in the
middle) at stage d2 was however dependent on the site, but not on the year; Khroufa’s site
had the highest k value (0.3723 ± 0.0499 tree / d) but was not significantly different from
Bellif (0.3302 ± 0.0287 tree / d). However, that of Ain Snoussi was the lowest (0.2262 ±
0.0191 tree / d) and significantly different from the other two. Thus, the majority of trees in
Khroufa and Bellif took less time to reach stage d2, compared to those in Ain Snoussi
(Figures 3D, 3E and 3F).
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1267 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
Figure 4: Non-flowering trees at the study site: proportion ± confidence interval.
The bud duration (difference between median dates of the two stages d2 and d1) in Bellif and
Khroufa was about 7 days, while in Ain Snoussi, it was about 9 days.
This stational inter-variability of start and full bud dates appears to be due to the altitudinal
gradient. In addition, linear regressions between altitude and the dates of beginning of bud
burst (d1) (t = 75.93 + 0.034Altitude; R² = 0.9983) and full bud (d2) (t = 82.24 +
0.0398Altitude; R² = 0.9991) were determined. Strong significant correlations at the 5% level
between the start date of bud burst (d1) and the date of full bud (d2) (correlation coefficient
Pearson R = 0.99946, p = 0.0210); between early bud burst (d1) and altitude (R = -0.9991,
p = 0.0484); and finally between the date of full bud (d2) and altitude (R = 0.99907, p =
0.0275) were also found.
In 2011, the beginning of bud burst (d1) was observed on April 3 (93.38 ± 0.71 j) in Bellif, on
April 1 (91.82 ± 0.96 j) in Khroufa and on April 8 (98.97 ± 0.69 j) in Ain Snoussi. The lag
between Bellif and Khroufa was not significant (1.56 ± 1.19 days) but was highly significant
between Ain Snoussi and Khroufa (7.1556 ± 1.18) and between Ain Snoussi and Bellif
(5.5922 ± 0.99). Full bud stage (d2) was completed on April 8 (98.57 ± 0.88 j) in Khroufa,
April 16 in Ain Snoussi (106.18 ± 0.87 j) and finally April 18 (108.27 ± 0.75 j) in Bellif.
Statistical analysis showed that the trees of the two populations of Bellif and Ain Snoussi
reached the full bud stage d2 together with a non-significant difference of 2.09 ± 1.15 days.
This confirms the lack of correlation between altitude and start dates and full bud in 2011 for
the three stations studied. The population of Khroufa reached this stage earlier than the other
two with a lag of 9.69 ± 1.16 days after Bellif, and 7.60 ± 1.24 days after Ain Snoussi.
Moreover, the differences were highly significant (p <0.0001) between Khroufa and the two
other stations.
It should be noted that the early bud stage d1 shifted 14.33 ± 1.03 days in Bellif, 8.512 ± 1.3
d in Khroufa and 1.30 ± 0.99 days in Ain Snoussi between 2010 and 2011. Indeed, this
variability is very highly significant (p <0.0001) for both Bellif and Khroufa stations, but not
significant for Ain Snoussi.
P, Bellif, 0.23077
P, Khroufa, 0.09091
P, Snoussi, 0.26829 P, Tous sites
confondus, 0.21569
no
n-f
low
rin
g-tr
ees
(%)
Site
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As for the full bud stage d2, it also shifted 22.33 ± 0.99 days in Bellif, 8.01 ± 1.15 d in
Khroufa but only 1.07 ± 1.26 d in Ain Snoussi. Similarly, this variability was also very highly
significant (p <0.0001) for both Bellif and Khroufa stations, but not significant for Ain
Snoussi.
Bud duration lasted 7 days in Ain Snoussi and Khroufa, and 15 days in Bellif.
Taking 8°C as the base temperature 37
, the individual populations of Bellif and Ain Snoussi
accumulated 348.5 and 153.6 degree days during the 2010 season (from January 1 to the
median date of the stage in question), from bud start (stage d1) while those of Khroufa,
accumulated 297.6 degree days. To reach the full bud stage (stage d2), the Bellif population
accumulated the most temperatures (405.5 degree days), followed by Khroufa (353.7 degree
days) and finally Ain Snoussi (180.6 degree days).
In 2011, in order to begin to bud (stage d1), the populations of Bellif, Khroufa and Ain
Snoussi had accumulated 349.4, 231.3 and 101.9 degree days, respectively. The full bud
stage (d2) occurred after an accumulation of 453.9 degree days in Bellif, 302.7 degree days in
Khroufa and 125.6 degree days in Ain Snoussi.
Flowering: For the only observation campaign (2011) and for the three study sites, a certain
number of trees did not flower. The percentage of trees with flowers was 73.9% in Bellif,
51.3% in Khroufa and 73.2% in Ain Snoussi (Figure 5). According to the analysis of
deviance, using the logistic model, it was found that the percentage (or proportion) was not
significantly influenced by the site effect (Pr> chisq = 0.2852). However, the difference
between the percentages of flowering trees for both Khroufa and Ain Snoussi sites was
significant at the 0.10 level.
For the three stations studied, the beginning and end of flowering during the 2011 season for
the majority of trees occurred from April - mid-May. The deviance analysis showed that for
the two stages, early (F0) and late flowering (FF), there was a highly significant effect of time
or dates; however the Site effect was significant at the 0.10 level (Table 4). The interaction
Site * time was significant only for the FF stage. The goodness of fit was great (McFadden's
pseudo-R2 of 0.6062 and 0.517 for the two stages F0 and FF, respectively).
The median dates, estimated from the model, for early flowering (F0) and late flowering (FF)
are shown in Table 3.
For the early flowering stage (stage F0) for the 2011 season, the estimated median date
occurred around April 11th (101.22 ± 0.80j) in Bellif, on April 6
th (96.5 ± 1.23 j) in Khroufa
and April 9th (99.27 ± 0.74) in Ain Snoussi (Table 4). There was no significant difference
between median dates for this stage in Bellif and Ain Snoussi (a lag of only 2 days). The
median date of this same stage was intermediary in Khroufa station. The lag between Bellif
and Khroufa was 5 days whereas between Khroufa and Ain Snoussi it was only 3 days.
The value of k rate, controlling the slope in the median, at stage F0 was dependent on the site,
however. The Ain Snoussi site had the highest k value (0.3723 ± 0.0499 trees / d) but was not
significantly different from Bellif (0.3302 ± 0.0287 tree / d). In contrast, that of Ain Snoussi
was the lowest (0.2262 ± 0.0191 tree / d), significantly different from the other two. Thus, the
majority of trees in Khroufa and Bellif took less time to reach stage F0, compared to those of
Ain Snoussi (Figure 6).
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Figure 5: Kinetics into the start time (A) and end (B) of flowerings of Quercus suber L. for
the three study sites (Bellif, Khroufa, and Ain Snoussi) and adjusted logistic models.
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1270 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
Figure 6: Observed kinetics of cumulative leaf fall of Quercus suber L. for the three study
sites (A: Bellif, B: Khroufa, and C: Ain Snoussi) and the adjusted kinetic by the Bi-Richards
or Bi-logistics ( ) models and the increment of adjusted leaf fall ( ).
Phenological … Kaouther Ben Yahia et al.
1271 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
Table 3: Dates at the inflection point Ti (at which 50% of the trees have reached the stage in
question) of adjusted logistic models to evolution of the two onset stages (d1) and end of bud
break (d2) for the three study sites in 2010 and 2011. The values of the parameters that have
different letters are significantly different at a 0.05 level.
Table 4 :Dates at the inflection point Ti (at which 50% of the trees have reached the stage in
question) of adjusted logistic models to temporal evolution of the two onset stages (d1) and
end of bud break (d2) for the three study sites in 2010 and 2011. The values of the parameters
that have different letters are significantly different at a 0.05 level.
Site FO FF
Ti k Ti k
Bellif 101,22 ± 0,80a 0,35 ± 0,06a 125,09 ± 0,90b 0,2841 ± 0,05a
Khroufa 96,50± 1,23ab 0,24 ± 0,05a 122,57± 1,10b 0,2927 ± 0,05a
Ain Snoussi 99,27 ± 0,74a 0,38 ± 0,07a 136,42 ± 1,24a 0,1728 ± 0,02b
The flowering end date (stage FF) for the year 2011 took place on May 5 (125.09 ± 0.9j) in
Bellif, May 2 (122.57 ± 1.1j) in Khroufa and May 16 (136.42 ± 1.24j) in Ain Snoussi. Thus,
the earliest population was Khroufa and the last was Ain Snoussi. Moreover, there was no
difference between the Bellif and Khroufa stations but the difference was highly significant
(p <0.0001) between Ain Snoussi and the other two stations. The value of k rate (controlling
the slope in the median) at stage FF was only dependent on time. The Bellif and Khroufa sites
had the highest values of k (0.2841 ± 0.04808 tree/ day and 0.2927 ± 0.05722 tree/ day,
respectively), not significantly different from each other, however that of Ain Snoussi was
the lowest (0.1728 ± 0.02277 tree / day) and was significantly different from the other two.
Thus, the majority of trees in Khroufa and Bellif took less time to reach stage FF than those
of Ain Snoussi.
The flowering period (difference between the respective median dates F0 and FF) was 23.87
days in Bellif, 26.08 days in Khroufa and 72.96 days in Ain Snoussi. The flowering period
overlapped with the start and full bud dates. Indeed, flowering started with the beginning of
bud burst (range 0.3 j) in Ain Snoussi, just after the beginning of bud burst in Bellif and
Khroufa (differences of 7.82 days and 4.68 days, respectively) to extend and complete its
Site year d1 d2
Bellif : 2010 79,04 ± 0,75d 85,94 ± 0,65c
2011 93,38 ± 0,72a 108,27 ± 0,75a
Khroufa : 2010 83,30 ± 0,9c 90,56 ± 0,74d
2011 91,82 ± 0,96b 98,57 ± 0,88b
Ain Snoussi : 2010 97,67±0,71a 107,24 ± 0,91a
2011 98,97±0,70a 106,18 ± 0,87a
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1272 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
cycle after full bud stage (d2) from 16.82 days in Bellif, 23.93 days in Khroufa and 30.24
days in Ain Snoussi.
Therefore, we conclude that catkins developed concomitantly with the period of bud break,
completed their development earlier and fell after leaf expansion.
The onset of phenological events (early bud break and full bud, bloom) was not simultaneous
for all the trees and their duration was also different within the same station. Thus, for the
early stages and full bud, early and late flowering, intra-specific variability and very highly
significant differences were found (p <0.0001) at the three sites and over the two years of
observations. This inter-individual variability could be explained by changes in climatic
conditions.
Leaf fall: Leaf fall took place throughout the year, but generally for two phases with two
peaks, which varied according to the station and year. The quality adjustment was excellent
(Table 5) with errors often self-correlated (corrected using a covariance matrix of the type of
residue AR (n).
During the 2010 season for the Bellif station, the beginning and end of Phase 1 leaf fall of
Phase 1 were on February 13 (44.57 ± 2.49 days) and June 13 (estimated by the Bi-Richards
model), respectively, to reach a first peak around April 14, with a maximum speed of leaf fall
of 2.7733 ± 0.1023g / m² / day. This first phase lasted about 4 months. For the Khroufa
station, Phase 1 leaf fall started late, around April 13, reaching its peak around May 3 with a
maximum increase in leaf fall of 2.5611 ± 0.032 g / m² / day and ending around May 13. This
phase 1 lasted about one month, significantly lower than that of Bellif. In Ain Snoussi, leaf
fall began significantly later than Bellif and Khroufa. It occurred on May 2 and ended May 21
with a maximum daily increase of about 2.12 ± 0.4664 g / m² / day. The first peak was
reached on May 11. Its duration was very short compared to those of Bellif and Khroufa,
only 20 days.
During the same year of 2010, the beginning of Phase 2 leaf fall was earlier than that of phase
1 in the Khroufa and Ain Snoussi stations. It started about March 27 in Khroufa station and
February 26 in Ain Snoussi. However, in Bellif station, the start of phase 2 leaf fall took
place in the autumn, from October 10 to reach its peak about December 7 and be completed
in February of the following year. Thus, the length of leaf fall was almost 4 months. In the
other two stations, leaf fall ended around October 16 in Khroufa and on September 12 in Ain
Snoussi after a fall time of 203.2 days and 198 days, respectively in the three study stations,
maximum speeds of leaf fall during phase 2 were significantly lower than those of Phase 1.
They were recorded at 1.1595, 0.7859 and 0.7634 g / m² / day in Bellif, Khroufa and Ain
Snoussi stations, respectively.
Although leaf fall speed differed between the two phases, the K values (maximum relative
growth rate per unit of time) for both phases 1 and 2 remained relatively constant for Bellif
station. However, for both stations Ain Snoussi and Khroufa, the K value for Phase 2 was
significantly lower than that of Phase 1.
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Table 5 Parameters (± SE) of the statistical model used (bi-Richards or bi-logistics) in order to model the cumulative falling leaves of cork oak during a
growing season, depending on the site and season. The derived quantities (±ES) from these parameters are presented here.
Bellif Khroufa Ain Snoussi
Models parameters 2010 2011 2010 2011 2010 2011
A1 302.98± 5.08 257.82±3.7519 49.2942±6.4397 80.622±9.39 24.76±6.24 142.18±1.9
t1i 104.59±1.4751 105.11±2.094 123.63±1.751 116.52±2.0789 131.63±3.27 123.36±1.1257
K1 0.009152±0.00043 0.01706±0.00133 0.0399±0.00681 0.0222 0.05784±0.02149 0.01466±0.00084
m1 2 3.0849±0.5312 3.3704±1.2315 2 2 2
A2 120.83±43.56 170.87±9.2723 146.33±7.785 90.49±8.57 134.74±5.85
t2i 340.91±19.51 345.7±3.2 173.33±8.63 188.28±11.8 156.62±3.77
K2 0.00958±0.0034 0.01948±0.00274 0.00537±0.00025 0.00517± 0.000554±0.00045
m2 2 7.8909±3.2878 1.6344±0.2382 2 2
Derived quantities :
Onset t10, phase 1 44.57±2.49 60.19±3.72 103.22±5.07 92.6167±2.8854 122.13±5.3449 85.88±2.0697
End t90, phase 1 164.61±3.74 128.77±3.17 133.06± 2.11 140.43±4.4664 141.13±4.20 160.84±2.7454
duration, phase 1 120.04±5.63 68.57± 4.85 29.83±5.66 47.81±6.26 18.9923±7.05 74.955 ± 4.309
increment. max., phase
1 2.77± 0.1023 4.40± 0.32 2.56 ± 0.20 2.13±0.15 2.1239±0.4664 2.0839 ± 0.1104
Onset t10, phase 2 283.57±8.5421 278.5±9.539 86.57±4.5334 82.11±10.57 57.394 ±5.857
End t90, phase 2 398.25±38.91 354.7±3.89 289.7± 8.0716 294.46±20.85 255.85 ±11.13
duration, phase 2 114.68±40.63 76.19±10.33 203.2±9.31 212.34±23.1504 198.45 ±16.10
increment. max., phase
2 1.1595±0.128 3.33±0.36 0.78 ±0.03234 0.4783±0.0759 0.7634 ±0.08097
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During the year 2011 for Bellif station, the beginning and end of leaf fall estimated by the Bi-
Richards model during Phase 1 were on March 1 and May 8, respectively, to reach the first
peak around April 15, with a maximum leaf fall rate of about 4.4018 ± 0.3205 g / m² / day.
The estimated duration of the fall exceeded two months.
During the same 2011 season for Khroufa station, the beginning of Phase 2 leaf fall occurred
around March 23 and ended around October 16 after a fall time of about 212.34 days.
However, in Bellif station, Phase 2 leaf fall began in autumn, from October 5, to reach its
peak around December 12 and be finished about December 20; the duration of this phase was
almost 2½ months. For both stations Bellif and Khroufa, maximum speeds of of phase 2 leaf
fall (3.3277 and 0.4783 g / m² / day, respectively) were significantly lower than those of
Phase 1.
The values of K (slope at the inflection point) for both phase 1 and 2 remained constant for
the Bellif station. However, for Khroufa station, the value of K for Phase 2 was significantly
lower than that of Phase 1.
DISCUSSION
In a Mediterranean climate, the transition from winter to spring is characterized by an
increase in air temperature. There are thus the successive phases of budding leaf and flower
and leaf fall. However, the beginning of phenological events was not simultaneous for all
trees and duration was also different 21
.
Costae-Silva et al.23
also found that this species budding in the same period in Portugal.
However, Pinto et al.5 showed in their study of cork oak that the mean bud date was later,
between April and mid-May.
El Ennajah 28
, working on cork oak plants of different Tunisian provenances raised in a
nursery, also found that bud break occurred in late April.
The study sites varied by an altitudinal gradient, thus allowing us to follow the bud
phenology of Quercus suber L. over a fairly large temperature gradient over two years of
observations.
However, altitude and temperature are not always linearly correlated. Topography and
exposure might also have an additional effect on the temperature at a given site 2. This could
explain the absence of significant correlations between the median dates of bud burst and the
altitude or temperature.
The stages of beginning and full bud (d1 and d2) of Quercus suber L. were gradually lagged
with increasing altitude. This result is consistent with that obtained by Vitasse13
in different
species of the temperate region. This author has shown, the more the population of a species
is at a higher altitude, the later the average date of bud burst. He also showed that the average
bud break dates of two deciduous hardwood species (sessile oak and sycamore) are best
correlated with altitude; however, the houx (evergreen species) and beech have the least
correlated bud burst dates. Another study on deciduous and coniferous trees showed an
increase of 100 m altitude causes a two day delay in the date of bud burst 38
.
Overall, temperature explains phenological variations better than altitude whatever the
phenophase (bud, leaf senescence and the length of the growing season) and species13
.
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1275 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
The study of bud development kinetics helped highlight differences between the two years of
observation in the three stands of Quercus suber L. studied. The premature developing of
Quercus suber L. buds in 2010, remarkable at both stations Bellif and Khroufa, was related to
mild winter and spring temperatures. Indeed, an increase of more than 1°C (about 1.3 in
Bellif and 1.2°C in Khroufa) of the average air temperature in the period from January to
March could explain the lag beginning bud break of about 14 days in Bellif and 8 days in
Khroufa. This increase in temperature could also explain the lag in the full bud stage (d2)
from 22 days in Bellif to 8 days in Khroufa. However, an increase of 0.5°C in Ain Snoussi
apparently did not affect either the bud break start date or the full bud date. These results are
consistent with those observed in Quercus suber L in Portugal by Costae-Silva et al.23
; these
authors showing that an increase of 6°C in the air temperature caused an early budburst of 30
days. Another study also conducted on cork oak showed that a 1°C temperature in the spring
results in a 6-day precocity in bud break15
.
This same finding was observed in temperate deciduous and coniferous forests 13,38
. Several
studies of Mediterranean oaks have shown that air temperature is the main environmental
driver of budburst 5,15
. This high sensitivity of buds to changes in environmental conditions
reflects the phenological plasticity which plants have, especially in arid climates, to extend
the growing season before the summer drought 39
. Moreover, intra-specific models developed
by several researchers 40-44
on temperate, boreal and Mediterranean forests have also
demonstrated the central role of altitude and latitude in the phenological cycles and the
importance of the spring thermal regime (February to April) on phenology.
Although the cork oak population in Bellif accumulated the same amount of degree days over
the two years of observation, the beg bud date shifted 14 days, probably due to low
temperatures recorded in 2011 during the months of January and February. Thus it seems that
air temperature is the determining factor for the wood bud in this study area and for cork oak.
This result is consistent with those obtained by others researchers 5, 23, 45
. Similarly, Ogaya
and Penuelas14
in their study of Quercus suber phenology and floristic species showed that
Quercus suber buds depend on temperature whereas Arbutus unedo, Phillyrea latifolia buds
depend more on the availability of water.
However, for the site of Ain Snoussi, bud break occurred at almost the same period for both
seasons of observation 2010 and 2011, although the accumulated degree days were relatively
low (compared to other sites) and different for the two seasons (154 degree days in 2010 and
105 degree days in 2011); this was probably due to lower temperatures in 2011.
Furthermore, a sudden spring heat wave for a few days in the months before bud break
occurred in 2011. These lower cumulative temperatures in 2011 could also be due to base
temperature overestimation (8°C) in Ain Snoussi station since it is located more than 600 m
from the two other stations. Pinto et al.5 (2011) estimated base temperature at 6.2°C in
Quercus suber L., one very close to the temperature that triggers Quercus ilex L. buds and
needs about 323 degree days 15
.
Moreover, this base temperature varies depending on the station for the same species. It
would thus be better to estimate base temperature for each of the major biogeographic zones
of cork oak in Tunisia in order to estimate the heat requirements for bud break of this species.
As for Ain Snoussi, cork oak buds in Khroufa station also shifted one week without the
population having accumulated the same degree days. So aside from temperature, other
factors such as photoperiod and soil moisture are involved in this species' bud.
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1276 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
As for flowering, catkins developed concomitantly with the period of bud break and leaf
expansion and were widespread between mid-May and early June. Carita et al.46
showed that
the maximum flowering of Quercus suber L. in Spain takes place in June or July. These
authors also found that when conditions were favorable, there was a second period of
flowering. Quercus suber L. develops new leaves and catkins in the same period5. The same
phenomenon was observed in Quercus ilex L 14
. For Phillyrea latifolia L., flowering took
place in early spring when the leaves came out at the end of that season 14
(Ogaya and
Penuelas, 2004). However, Arbutus unedo L. developed new leaves in the spring while the
flowering took place in the autumn of the same year14
. These showed that flowering depends
on water availability.
Generally, floral development does not require environmental conditions as favorable as for
vegetative growth 47
. In Mediterranean regions, flowering occurs mainly in the spring 48
when
water is still available in the soil.
The variability of the phenological character observed between populations depends on two
factors: the intra-populational and inter populational variabilities, linked both to the effect of
the environment, but also to the genetic structure of the population 12, 13
.
In the three study sites, repeated measurements over time (2010 and 2011) of leaf fall showed
a fluctuating pattern: a period with a very large leaf fall which took place mainly in spring,
between April and May, succeeded by another period with low amounts of fallen leaves that
took place either in the autumn, between October and December or early summer (the whole
month of June or even July). This significant leaf fall spring is synchronized with the budding
trees. This same observation was made in Montpellier about oak 26
and in Portugal by
Oliveira et al.21
and Sa et al.49
. These authors showed that bud and leaf expansion occurred
either simultaneously or after the fall of old leaves. The latter continued until late spring.
However, in Spain, Caritat et al.50
showed that leaf fall took place in late spring, in May and
June, after budding and new leaves, like all Mediterranean oaks 50,51
(Andivia et al. 2012),
Milla et al.48
support the idea of Caritat et al.50
and showed that, among evergreen species,
leaf fall peaked just after vegetative growth (June, July) in spring (April, May). In studies
conducted on Quercus ilex L 52-54
2015) also showed that leaf fall of this evergreen species in
the Mediterranean has two peaks, the first occurring in spring just after budding and the
second in autumn (October-November).
The second two peaks observed in Ain Snoussi and Khroufa in early summer were explained
by Caritat et al. 46
and Caritat et al.50
by an adaptive strategy to water deficit that occurs
during this season following successive episodes of drought. This short period of abscission,
characteristic of Mediterranean forest ecosystems, takes place between June, July and August 21,46,50,
. Moreover, it should be noted that the life of the cork oak leaves in the sites observed
appeared to be short, not exceeding 12 months.
However, in Bellif the second peak occurred in autumn. Caritat et al.50
, Bussoti et al.54
;
Andivia et al.51,52
, in their studies of Quercus suber L. and Quercus ilex L., showed that this
second, smaller peak occurred when climatic conditions were favorable during the growing
season. This peak can be linked to the rhythmic growth of cork oak with the emission of a
wave of growth (flush) with the appearance of new leaves, which took place just after
summer and before air temperature fell50
. Thus, it would be interesting to conduct a fine
monitoring of the primary growth cork oak in the future and link the falling leaves to that.
Phenological … Kaouther Ben Yahia et al.
1277 J. Chem. Bio. Phy. Sci. Sec. B, August 2016 – October 2016; Vol.6, No.4; 1258-1281.
Leaf fall fluctuated between stations and years. The highest fall rates varied from 2.77g m-
²day-1
to 4.4 g m-²day-1
in Bellif and from 2.56 to 2.13 g m-²day-1
in Khroufa. As for Ain
Snoussi, they were constant, approximately 2.1 gm-² day
-1. This same observation was made
about Scots pine in France and Douglas fir in Finland55
. Their growth rate ranged from 1.43
to 3.27 gm-² day
-1 in
Speulderbos for Pinus sylvestris and from 1.61 to 2.54 gm
-² day
-1 in
Hyytiala for Douglas fir. These fluctuations may be consequences that are due to irregular
weather conditions that can create high leaf loss or nutritional problems. The same
phenomenon was observed for Pins.
Since leaf fall rates varied from one year to another and from one station to another, it would
be interesting to carry out further subsequent studies to examine the causes of these
differences (nutrient cycles).
The use of statistical models (logistic model, Bi-Richards model which is the sum of two
Richards-Chapman models) made it possible to adjust the kinetics of the different
phenological phases (bud break, flowering and leaf fall) of Quercus suber L.
Different parameters characterizing this kinetics and derived quantities (start, end and
duration of phase) were defined thus making it possible to compare one station or one season
to another. Thus, the median date (early or full) of bud burst (beginning or ending), flowering
and the relative growth rate were estimated using a logistic model. The maximum speeds of
leaf fall, the maximum relative growth rate per unit of time, the dates of beginning and end of
leaf fall, and the length of each leaf falling phase were evaluated using the sum of two
Richards-Chapman models due to the two phases (superposed or sequential) of leaf fall. The
inflection time deducted from logistic models and Chapman-Richards corresponded to two
dates where leaf fall reached its peak (or maximum in terms of fall speed). In the future, it
would be interesting to generalize their use in further studies of plant phenology.
CONCLUSION
Geographical conditions, and therefore climate, are more important than species in deciding
phenophases. In Quercus suber, phenological stages seem to be well correlated with
temperature. This synchronization of phenophases corresponds to an adaptation of plant life
forms. Thus, the study of phenology requires special attention to climate variables and
particular events which might affect various phenophases.
The models used in this study could be used in phenological predictions for budding,
flowering and leaf fall of Quercus suber L., especially in Tunisia.
To detect the effects of climate change on the phenology of this species, a closer monitoring
in the future for a longer period of study will produce better results concerning budding,
flowering and leaf fall.
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