john wieczorek (for bgwg) museum of vertebrate zoology university of california, berkeley
DESCRIPTION
BioGeomancer: Collaboration to Automation . John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley. Georeferencing. Collaborations. Automation. Georeferencing. Collaborations. Automation. What is a georeference?. What is a georeference?. - PowerPoint PPT PresentationTRANSCRIPT
![Page 1: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/1.jpg)
John Wieczorek (for BGWG)Museum of Vertebrate Zoology
University of California, Berkeley
BioGeomancer: Collaboration to Automation
![Page 2: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/2.jpg)
GeoreferencingCollaborations
Automation
![Page 3: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/3.jpg)
GeoreferencingCollaborations
Automation
![Page 4: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/4.jpg)
What is a georeference?
![Page 5: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/5.jpg)
A numerical description of a place that can be mapped.
What is a georeference?
![Page 6: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/6.jpg)
A numerical description of a place that can be mapped.
What is a georeference?
In other words…
![Page 7: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/7.jpg)
ID Species Locality1 Lynx rufus Dawson Rd. N Whitehorse2 Pudu puda cerca de Valdivia3 Canis lupus 20 mi NW Duluth
9 Ursus arctos Bear Flat, Haines Junction
4 Felis concolor Pichi Trafúl5 Lama alpaca near Cuzco6 Panthera leo San Diego Zoo7 Sorex lyelli Lyell Canyon, Yosemite8 Orcinus orca 1 mi W San Juan Island
What we have:Specimens with Textual Localities
![Page 8: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/8.jpg)
What we want:Mapped, Georeferenced Localities
![Page 9: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/9.jpg)
What is a georeference?
A numerical description of a place that can be mapped.
![Page 10: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/10.jpg)
“Davis, Yolo County, California”
“point method”
Coordinates: 38.5463 -121.7425Horizontal Geodetic Datum: NAD27
![Page 11: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/11.jpg)
What is an acceptable georeference?
A numerical description of a place that can be mapped
and that describes the spatial extent of a locality
and its associated uncertainties.
![Page 12: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/12.jpg)
“Davis, Yolo County, California”
“bounding-box method”
Coordinates: 38.5486 -121.754238.545 -121.7394
Horizontal Geodetic Datum: NAD27
![Page 13: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/13.jpg)
“Davis, Yolo County, California”
“point-radius method”
Coordinates: 38.5468 -121.7469Horizontal Geodetic Datum: NAD27Maximum Uncertainty: 8325 m
![Page 14: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/14.jpg)
What is an ideal georeference?
A numerical description of a place that can be mapped
and that describes the spatial extent of a locality
and its associated uncertaintiesas well as possible.
![Page 15: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/15.jpg)
“Davis, Yolo County, California”
“shape method”
![Page 16: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/16.jpg)
point easy to produce no data quality
bounding-box simple spatial queriesdifficult quality assessment
point-radius easy quality assessmentdifficult spatial queries
shape complete representationcomplex
Method Comparison
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GeoreferencingCollaborations
Automation
![Page 18: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/18.jpg)
Collaborative DistributedDatabases for Vertebrates
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Collaborations
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MaNIS Localities Georeferenced
n = 326k localities (1.4M specimens)r = 14 localities/hr (point-radius method)
t = 3 yrs (~40 georeferencers)
![Page 21: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/21.jpg)
Scope of the Problem for Natural History Collections
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Scope of the Problem for Natural History Collections
~2.5 Giga-records
![Page 23: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/23.jpg)
Scope of the Problem for Natural History Collections
~2.5 Giga-records~6 records per locality*
~14 localities per hour*
* based on the MaNIS Project
![Page 24: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/24.jpg)
Scope of the Problem for Natural History Collections
~2.5 Giga-records~6 records per locality*
~14 localities per hour*
~15,500 years
* based on the MaNIS Project
![Page 25: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/25.jpg)
GeoreferencingCollaborations
Automation
![Page 26: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/26.jpg)
AutomationCombining the Best in Georeferencing
GeoLocateDIVA-GIS
MaNIS Georeferencing Calculator
BioGeomancer Classic
![Page 27: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/27.jpg)
![Page 28: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/28.jpg)
Major Activities (expected Sep 2006):
1) Develop spatial data standards for biodiversity
![Page 29: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/29.jpg)
Major Activities (expected Sep 2006):
1) Develop spatial data standards for biodiversity
2) Assemble relevant spatial data
![Page 30: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/30.jpg)
Major Activities (expected Sep 2006):
1) Develop spatial data standards for biodiversity
2) Assemble relevant spatial data
3) Further develop existing desktop applications
![Page 31: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/31.jpg)
Major Activities (expected Sep 2006):
1) Develop spatial data standards for biodiversity
2) Assemble relevant spatial data
3) Further develop existing desktop applications
4) Create workbench for automated georeferencing, editing, and validating
![Page 32: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/32.jpg)
BioGeomancer Workbench
Automated Georeferencing
Visual Georeference Editing
Georeference Validation
Outlier Detection
![Page 33: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/33.jpg)
BioGeomancer Workbench
Automated Georeferencing
Visual Georeference Editing
Georeference Validation
Outlier Detection
![Page 34: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/34.jpg)
BioGeomancer Workbench:Automated Georeferencing
Text Interpretation
Feature Lookup
Shape Generation
![Page 35: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/35.jpg)
BioGeomancer Workbench:Automated Georeferencing
Text Interpretation
Feature Lookup
Shape Generation
![Page 36: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/36.jpg)
Automated Georeferencing:Text Interpretation
“Between Albuquerque and Moriarity”
Locality Type: BF (Between Features)Feature1: AlbuquerqueFeature2: Moriarity
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BioGeomancer Workbench:Automated Georeferencing
Text Interpretation
Feature Lookup
Shape Generation
![Page 38: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/38.jpg)
Automated Georeferencing:Feature Lookup
![Page 39: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/39.jpg)
BioGeomancer Workbench:Automated Georeferencing
Text Interpretation
Feature Lookup
Shape Generation
![Page 40: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/40.jpg)
Automated Georeferencing:Shape Generation
++ + +b
dea
+
+c BA
g+
e'
h+
Bounding-box
Point-radius
Shape
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BioGeomancer Workbench
Automated Georeferencing
Visual Georeference Editing
Georeference Validation
Outlier Detection
![Page 42: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/42.jpg)
BioGeomancer Workbench:Visual Georeference Editing
![Page 43: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/43.jpg)
BioGeomancer Workbench:Visual Georeference Editing
![Page 44: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/44.jpg)
BioGeomancer Workbench
Automated Georeferencing
Visual Georeference Editing
Georeference Validation
Outlier Detection
![Page 45: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/45.jpg)
BioGeomancer Workbench:Georeference Validation
Elevation
Geography
Species Distribution
![Page 46: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/46.jpg)
BioGeomancer Workbench
Automated Georeferencing
Visual Georeference Editing
Georeference Validation
Outlier Detection
![Page 47: John Wieczorek (for BGWG) Museum of Vertebrate Zoology University of California, Berkeley](https://reader034.vdocuments.site/reader034/viewer/2022051419/56815da3550346895dcbcdab/html5/thumbnails/47.jpg)
BioGeomancer Workbench:Outlier Detection
Elevation
Environment
Species Distribution Model
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Beyond 1 September 2006
Seek Industry Support for Data Layers
Develop Workbench into Collaboratories
Develop Locality Interpretation in Additional Languages
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Why do all of this?
So that those who generate and care for the data
can realize and share its potential.
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http://www.biogeomancer.org
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