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REVIEW
Japanese Encephalitis: A Persistent Threat
Aditi Singh • Shailendra K. Saxena •
Apurva K. Srivastava • Asha Mathur
Received: 9 September 2011 / Accepted: 14 November 2011 / Published online: 18 January 2012
� The National Academy of Sciences, India 2012
Abstract Japanese encephalitis virus (JEV) belongs to
arthropod-borne virus family, which are infectious agents
transmitted by blood-sucking arthropods. They multiply in
the tissues of the arthropod without evidence of disease or
damage. The principal vector is Culex mosquito, most
important being C. tritaenorhynchus, which is a rural mos-
quito, breeding extensively in rice fields and bites large
domestic animals. In temperate zones, this vector is present
in greatest density from June to November. The natural cycle
of JEV consists of pig–mosquito–pig or bird–mosquito–bird
cycle. Pigs serve as most important biological amplifiers and
reservoirs. JEV is transmitted to humans through the bites of
infected mosquitoes. Humans are accidental, dead-end hosts
as they do not develop a level of viraemia sufficient to infect
mosquitoes. The infection with JEV ranges from nonspecific
febrile illness to a severe meningoencephalomyelitis illness.
The risk for Japanese encephalitis varies by local ecology
and season. In temperate areas of Asia, human disease
usually peaks in summer and falls down after that and these
seasonal epidemics can be explosive with thousands of cases
occurring over a period of several months; whereas, in the
subtropics and tropics, transmission can occur throughout
the year, with disease at a peak during rainy season. A
detailed study has been done on geographic distribution of
JEV and incidence and burden of disease in India. Vacci-
nation proves to be the best measure to protect the individual
against any disease. So, large scale immunization of sus-
ceptible human population is highly important to prevent
this deadly infection. In India, vaccinations against Japanese
encephalitis are administered in areas where the disease is
hyperendemic.
Keywords Japanese encephalitis � Encephalopathy �Mosquito-borne infection
Introduction
Japanese encephalitis (JE), one of the most common cause
of acute encephalitis in tropics [1, 2], has generated con-
siderable public anxiety in India. Caused by a neurovirulent
RNA flavivirus, JEV and transmitted by mosquitoes, the
occurrence of this disease highlights the inter relationship
between man and animals, birds and the environment.
Among an estimated 35,000–50,000 cases reported annu-
ally, approximately 20–30% of patients die and 30–50% of
survivors suffer from neurological sequelae [3, 4]. The
infection with JEV ranges from nonspecific febrile illness
to a severe meningoencephalomyelitis illness [5]. The
symptoms are serious and no definite treatment is available.
JE is mainly a disease of children, but it can occur among
persons of any age which is mostly travel related and is
generally very rare [6–8]. Travellers living for prolonged
periods in rural areas where JE is endemic or epidemic are
at greater risk than short term and urban travellers.
Vaccination proves to be the best measure to protect the
individual against any disease. Hence, large scale immuni-
zation of susceptible human population is highly important
A. Singh
Amity Institute of Biotechnology, Amity University Lucknow,
MOC Campus, Near Malhaur Crossing, Lucknow 226010, India
S. K. Saxena
Centre for Cellular and Molecular Biology (CSIR), Uppal Road,
Hyderabad 500007, India
A. K. Srivastava � A. Mathur (&)
Department of General Pathology & Microbiology, Saraswati
Dental and Medical College, Tiwariganj, Faizabad Road,
Lucknow 227105, India
e-mail: [email protected]
123
Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68
DOI 10.1007/s40011-011-0005-x
to prevent this deadly infection. In India, vaccinations
against Japanese encephalitis are administered in areas
where the disease is hyperendemic, like Gorakhpur region of
Uttar Pradesh [9]. In the case of JE, it is essential to
immunize the pigs (amplifying host) also to interrupt the
transmission of disease [10]. Thus, control of vectors and
intense immunization in endemic regions are the only
effective preventive measure. The vaccines available for JE
these days are of three types—(i) A Mouse-brain derived
inactivated vaccine (only vaccine which is WHO approved),
(ii) cell-culture derived inactivated JE vaccine (which was
developed in China), and (iii) cell-culture derived live
attenuated JE vaccine (which is the most cost-effective
vaccine [11]). Apart from them, recombinant protein based
vaccine and DNA vaccines are still in development process.
Historical Background
Japanese encephalitis was first recognised as a clinical
entity in Japan in 1871; but the causative agent (JEV) was
later isolated from a fatal human case in 1934 in Japan and
was serologically and virologically established as a proto-
type (Nakayama) strain [12]. The Nakayama strain was
later used in the development of mouse brain inactivated
virus vaccine. It took almost 25 years after its first
isolation, to elucidate the mode of transmission by mos-
quito vector. In last three decades, the focus of viral epi-
demics has changed from temperate zone of Asia to South
and Southeast Asia [13]. In India, acute viral encephalitis
was first detected in 1955 and since then, it has taken away
thousands of lives. Several encephalitis outbreaks reported
in the later years remained undiagnosed.
Ecology and JEV Transmission
JEV belongs to arthropod-borne virus family (arboviruses),
which are a group of infectious agents that are transmitted
by blood-sucking arthropods. They multiply in the tissues
of the arthropod without evidence of disease or damage.
The principal vector of this zoonotic disease is Culex
mosquito, most important being C. tritaenorhynchus, oth-
ers are C. vishnui and C. pseudo-vishnui [14, 15], which are
primarily rural mosquitoes breeding extensively in rice
fields and preferentially bite large domestic animals like
pigs and wading birds [16]. In temperate zones, this vector
is present in greatest density from June to November. The
natural cycle of JEV consists of pig–mosquito–pig or bird–
mosquito–bird cycle (Fig. 1). Other minor hosts are cattle,
buffaloes, goats, sheep, horses, rodents, monkeys, dogs and
bats [17].
Fig. 1 Transmission cycle of
Japanese encephalitis virus
(JEV). JEV is transmitted in an
enzootic cycle between Culexmosquitoes and amplifying
vertebrate hosts, primarily pigs
and wading birds like water
fowls and egrets. Human beings
serve as a dead-end host in the
JEV transmission cycle with
low levels of viremia. Humans
play no role in the maintenance
or amplification of JEV, and the
virus is not transmitted directly
from person to person
56 Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68
123
Pigs are the most important biological amplifiers and
reservoirs [18]. Countries, like Pakistan, that do not rear
pigs experience rare JE cases [19]. In the study done on
rural children in Thanjavur district (Tamil Nadu), an area
with extensive paddy cultivation, JE occurrence was found
to be very low and without epidemics. The reason could
possibly be high cattle to pig ratio (400:1) [20]. JEV is
transmitted to humans through the bites of infected mos-
quitoes. Humans usually do not develop a level of viraemia
sufficient to infect mosquitoes [21]. Therefore, humans are
accidental, dead-end hosts, and human JE cases imported
into non-endemic areas represent a minimal risk for sub-
sequent transmission of the virus [22]. Direct person-to-
person spread of JEV does not generally occur until and
rarely it is through intrauterine transmission [23, 24].
Blood transfusion and organ transplantation may also serve
as potential mode of JEV transmission [25]. The risk for JE
varies by local ecology and season. In temperate areas of
Asia, human disease usually peaks in summer and falls
down after that [26–28] and these seasonal epidemics can
be explosive with thousands of cases occurring over a
period of several months; whereas, in the subtropics and
tropics, transmission can occur throughout the year, with
disease at a peak during rainy season. A recent study in
China has correlated the different weather variables like
temperature, relative humidity as possible predictors of
Japanese encephalitis incidence for regions with similar
geographic, weather and socio-economic conditions [29].
However in endemic areas (e.g., southern India) sporadic
cases may occur throughout the year due to congenial
climatic conditions [30].
Geographic Distribution of JE
Japanese encephalitis occurs throughout Asia and parts of
the Western Pacific areas (Fig. 2). The disease was rec-
ognized in the first half of 20th century in the temperate
areas of Asia, mainly Japan, Korea, Taiwan and mainland
China [31–33]; but over the past few decades, the disease
appears to have spread to Southeast Asia, India, Bangla-
desh, Sri Lanka and Nepal [34–37]. By 1990s, JEV had
spread to non-Asian regions, Saipan and Australia, where it
was reported first from Torres Strait islands and then from
northern mainland [38, 39]. The reasons for this wide
distribution can be population shifts or changes in climate,
ecology, agricultural practices, animal husbandry or
migrating bird patterns [40]. Though exact cause is
uncertain, these factors could very well contribute to fur-
ther spread, potentially beyond Asia and Western Pacific.
Incidence and Burden of Disease in India
In India, the disease has been recognized since 1945 and
though virus causes epidemics, it is endemic in several
parts of the country [41–44]. The earliest evidence of the
prevalence of JE virus was cited through serological
Fig. 2 Approximate
geographic range
(epidemiology) of Japanese
encephalitis highlighting the
areas which are engulfed by
Japanese encephalitis virus
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123
studies carried out at the Virus Research Centre, Pune in
1952 and then in 1956, the isolation of JE virus was made
from the wild caught mosquitoes, establishing its presence
in India. However, the virus could not be recovered from
human until 1958, when three isolations were made from
the brain tissue of encephalitis cases in Tamil Nadu [45].
The geographic area affected by JEV has expanded in the
last 60 years with higher epidemic activity in North India
and Central India (Fig. 3). Since the confirmation of first
clinical case of JE from Vellore in 1955 [46], there had
been many major JE outbreaks reported from Bihar, Uttar
Pradesh, Assam, Manipur, Andhra Pradesh, Karnataka,
Madhya Pradesh, Maharashtra, Tamil Nadu, Haryana,
Kerala, West Bengal, Orissa and Union Territories of Goa
and Pondicherry [47, 48].
Carey et al. [49] had reported almost 65 JE cases from
South India from 1955 to 1966 by demonstrating specific
neutralizing antibodies to JE. In its first major outbreak in
West Bengal, JE had taken about 300 lives from the two
districts, Burdwan and Bankura in 1973 [50]. During 1978,
several outbreaks of JE occurred in different parts of India
viz. Kolar district of Karnataka, Tirunelvelli, Benpura,
Burdwan and adjoining areas of West Bengal, Dhanbad
district of Bihar, Dibrugarh district in Assam, Goa on the
west coast [42] and eastern districts of Uttar Pradesh [41],
which was one of the worst JEV outbreaks. From this
outbreak, a successful isolation and identification of JE
virus as the causative agent was made from the brain tissue
of a fatal case of encephalitis from Gorakhpur district for
the first time by Asha Mathur and her team at the King
Georges’ Medical College, Lucknow [41]. Outbreak of JE
was again reported in 1981 from South Arcot district [46]
and from Gorakhpur in 1988 with as much as around 875
cases reported [51]. Eastern paddy growing districts of
Haryana suffered an epidemic of encephalitis in 1990 [43]
and Muzaffarpur district of Bihar in 1995. JE had emerged
as a major public health problem in naive non-endemic
area like Kerala [52], where a large outbreak of JE
occurred in Kuttanad area of Allepey district [53]. In a
severe epidemic of JE during October–November 1999 in
Fig. 3 Approximate display of
JE occurrence areas in India.
Different colours in the map
highlight the intensity by which
JEV occurs in different areas
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123
Andhra Pradesh, out of 23 districts, fifteen districts were
affected with 873 cases and about 20% mortality [54].
Another outbreak occurred in July 2003 in Warangal and
Karim Nagar district of Andhra Pradesh [55]. From north-
east regions, JE outbreaks which were reported from
Assam during July–August 1989, had affected a population
of *36,000 with 50% case fatality rate [56]. After that,
several other outbreaks have been reported from Assam
between 2000 and 2002 [57].
Thus, encephalitis by JEV that was known to cause
epidemics in several parts of the country now has become
endemic in many parts of India, especially in South India
[58] (including Tamil Nadu [47]) and terrain belt of Uttar
Pradesh [59], which is a matter of serious public health
problem. In Uttar Pradesh, the most severely JE affected
region is Gorakhpur and the longest epidemic in three
decades, had been reported from this district from July to
November, 2005, in which 5,737 people were affected and
approximately 1,344 died [60]. More recent studies on
phylogeny of virus revealed that the epidemic was caused
by JEV GP78 [61]. Gorakhpur and surrounding region
in Uttar Pradesh still gets consistent outbreaks of fatal
acute encephalitis syndrome (AES), of which *10–15% is
caused by JEV [62].
Among children in endemic zone, the incidence of
laboratory confirmed JE varies widely areawise, the range
being 5–50 cases per 100,000 children/year [28, 63]. The
number of affected persons is magnified also because of
many non-JE cases with unidentified etiologies. So, now
the cases are classified as JE and non-JE and enterovirus 89
and 76 were isolated from the CSF of non-JE encephalitis
cases from Gorakhpur in 2006 [11].
Japanese Encephalitis Virus
Four Flaviviral infections, of which three are encephalitis,
are transmitted by mosquitoes from birds [64]. Clinically
the most serious of these infections is ‘‘Japanese enceph-
alitis’’, caused by Japanese encephalitis virus (JEV). The
North Indian strain of Japanese encephalitis virus (JEV) is
GP78, which is phylogenetically closer to the Chinese
SA14 isolate. The other, Vellore P20778 isolate, was
obtained from southern India in 1958 [65]. JEV is an
enveloped virus and has a linear, single stranded, positive-
sense *11 kb long RNA as a genome and measures
40–50 nm in diameter with a nucleocapsid which is sur-
rounded by a lipid envelope (Fig. 4). The genomic RNA
Fig. 4 Morphology of the Japanese encephalitis virus and the detailed display of the organisation of viral genome highlighting the structural and
non-structural genes and also the structure of protein extracted
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123
contains a single open reading frame (ORF) and codes for a
polyprotein of *3,400 amino acids. This polyprotein is
cleaved by viral and host proteases into ten proteins: three
structural proteins (capsid, M and E proteins) and seven
non-structural proteins [66] (NS1, 2A, 2B, 3, 4A, 4B & 5).
Envelope or E defines the type specificity. The viral RNA
has non-coding regions of 95 and 585 bases at 50 and 30
ends which interact with viral or host proteins which are
important for virus replication [67]. Looking at the regular
epidemics of JE, studies are being conducted to look for
any mutation with the viral genome and as demonstrated by
Pujhari et al. [68] a novel mutation was detected in domain
II of the envelop gene of JEV circulating in North India.
More studies are required to ascertain its role in JE
pathogenesis.
Genotypes of Japanese Encephalitis Virus
Epidemics of encephalitis were described in Japan from
1870s onwards and have subsequently been found across
most of Asia [3]. For most of the major human pathogens,
we have little idea about where they have originated.
Because JEV has so rapidly spread to new areas, tracing its
geographical origin has been somewhat possible [69] and
phylogenetic comparison with other flaviviruses suggest
that it evolved from an ancestral virus a few centuries ago.
Five genotypes of JEV have been identified based on
nucleotide sequences of C/PrM and E genes: Genotype 1 to
5 [70]. Among the five, GIV and GV appeared rarely.
Genotype 1 (GI) is found to be circulating in northern
Thailand, Cambodia and Korea. It has been less associated
with human disease than genotype 3 in China; but a recent
study reported isolation of genotype 1 (GI) from a vacci-
nated boy who developed JE [71]. Genotype 2 (GII)
includes isolates from southern Thailand, Malaysia, Indo-
nesia and Northern Australia. Isolates from temperate
regions of Asia i.e. Japan, China, Taiwan, Philippines,
Vietnam, Sri Lanka, Nepal and India has been put in
Genotype 3 (GIII), whereas GIV includes isolates from
Indonesia only [72]. GV included only a single strain iso-
lated from a patient from Mummer, Malaysia in 1952 [73].
Since all five genotypes have been found in the Indonesia
Malaysia region, it is likely that these current five geno-
types evolved around the same region (Fig. 5). GI and GIII
occur in epidemic regions, whereas GII and GIV are
associated with endemic disease [3].
JEV is naturally transmitted between vertebrate hosts by
Culex and other mosquitoes. The reasons for its spread are
uncertain but many include changing agricultural practices,
such as increasing irrigation and animal husbandry [74].
JEV continues to spread with recent outbreaks in India,
Nepal and Australia. GIII is most widely distributed and
was the only genotype found in India till 2007 [62].
However, in a recent study done by Fulmali and his co-
workers demonstrated simultaneous detection and isolation
of GI and GIII JEV strains from 66 acute encephalitis
syndrome (AES) patients. Clinical syndrome for the two
strains was indistinguishable. Thus GI and GIII detection
indicates their co-circulation and association with human
infections in Gorakhpur region [9]. GI isolate from India
has been found to share close relationship with GI strain
from Japan and Korea. GIII was the major genotype cir-
culating in Japan, Korea and Vietnam until the early 1990s.
However, by mid 1990, G III disappeared in Japan and
Vietnam and GI supplanted it. This phenomenon is called
‘‘Genetic Shift’’ [75]. In Japan, JEV has been shown to
overwinter and settle [76]. In India, the exact mode of
introduction of GI JEV is not clear. It is possible that it may
have been introduced into India through migratory birds
like other Asian countries [77]. More studies are required
to establish the role of migratory birds in JE transmission.
Pathology and Pathogenesis
A considerable degree of variation exists in neurovirulence
and peripheral pathogenicity among JE virus strains and
the mechanism of JEV pathogenesis is still unclear [78]. It
has also been noted that typical pathological changes
associated with each epidemic varied dramatically [79].
After the virus gets inoculated into the skin by the bite of
an infected mosquito, it is quickly disseminated in the body
and proliferates in the reticuloendothelial system. There is
a transient period of viremia after which invasion of the
central nervous system occurs. JEV is thought to invade
brain via vascular endothelial cells by endocytosis [80],
which involve clathrin and membrane cholesterol, referred
to as lipid rafts acting as portals for virus entry [81]. In
brain, the distribution of virus is in the thalamus, hippo-
campus, substantia nigra and medulla oblongata [82]. In
the neurons, JEV replicates and matures in the neuronal
secretary system. Neurocysticercosis (NCC) in 33% of
patients dying with JE has been seen, but in only 1% of
patients dying due to other causes, suggesting that NCC
may somehow predispose to JE [79, 83]. A high level of
tumour necrosis factor is correlated with adverse outcome
in JE [84].
Clinical Spectrum
The majority of human infections with JEV are asymp-
tomatic with proportion of apparent to inapparent JEV
infection found to be 1:300 to 1:1000 during epidemics
[85]. In a study of JE infection in Assam, the ratio of
60 Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68
123
apparent to inapparent infection was shown to be 9.1:100
[86]. Milder forms of disease (e.g. aseptic meningitis or
undifferentiated febrile illness) can also occur, but have
been reported more commonly among adults [87]. JE
affects all age groups, with higher incidence in children
aged \15 years of age [37, 88]. However, in countries
(China and Japan) with childhood JE immunization pro-
grammes, the overall incidence of JE has decreased and
similar numbers of cases are observed among children and
adults [89, 90]. Because unvaccinated travellers from non
endemic countries usually are immunologically naive,
travel associated JE can occur in persons of any age [22].
Among patients, who develop clinical symptoms, the
incubation period is 5–15 days. Table 1 shows the course
of disease which is divided into three stages—prodromal
stage, acute encephalitic stage and late convalescent stage.
Fatality in JE patients is usually seen within 24–48 h of
admission [91] and among the survivors; at least one in 200
affected individuals develop severe psychoneurological
sequelae [92] in the form of parkinsonism [93], convulsive
disorders, motor abnormalities, impaired intellect, hearing
deficit, scholastic backwardness, speech disturbances [94]
and other subtle neurological signs. Movement disorders
have also been observed [95]. The disease can be much
more difficult to detect in infants.
Immune Mechanism Against JE Infection
After the entry, JE virus is partially destroyed at the site of
its entry and the remaining virus is disseminated by local
and systemic extra neural replication leading to viraemia.
After primary infection with JEV, presence of IgM anti-
bodies and T-lymphocytes are seen until about 2 weeks
[96, 97]. But antibodies alone are neither capable of ter-
minating the viraemia nor preventing the subsequent
infection [98]. Pregnancy is known to cause immunosup-
pression and persistent maternal infection or pregnancy
induced reactivation of the virus may cause foetal infec-
tion. Isolation of JEV from human placenta and foetuses
has been reported by Chaturvedi et al. [23], whereas
Mathur et al. [24] have described an animal model of
Fig. 5 Sequence phlylogeny of JEV isolates. Sequence phylogeny of
Japanese encephalitis virus isolates from Gorakhpur (India) 2005
epidemic, with reference to other Southeast Asian isolates and
flaviviruses based on partial E gene sequence. The tree was generated
by neighbor-joining method. Bootstrap values are indicated at the
branch points. DEN, WNV, KUN, SLEV and MVE denotes Dengue
virus, West Nile virus, Kunjin virus, Saint Louis encephalitis virus
and Murray Valley encephalitis virus respectively [61]
Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68 61
123
congenital infection with JEV, showing an active replica-
tion of virus in placenta. They have also shown transpla-
cental transmission of virus during consecutive pregnancies
of mice. JEV can establish latency within different organs
despite the presence of antiviral antibodies [99]. Immu-
nological and virological evidence for persistence of JEV
have been described in human nervous system also [100].
Latent and recurrent infection as a consequence of acti-
vation of latent JEV has been reported in humans [101].
A significant decrease in serum iron levels, a frequent
feature of microbial invasion is observed during JE infec-
tion [102, 103]. An early influx of macrophages followed
by neutrophils at the site of injury in different organs in
humans [104] and mice [105] has been reported, which is
correlated with the production of a neutrophil chemotactic
macrophage derived factor, MDF [106], with development
of hypoglycaemia [107, 108]. This chemotactic protein
(MDF) has been shown to play a protective role in the host
defence against JEV, through production of reactive
oxygen intermediates [109] in neutrophils and reactive
nitrogen oxide species [110] degrading the virus protein
and RNA. In other studies, mechanism of proinflammatory
cytokine [111] and cytokine secretion at molecular level
has been studied and the involvement of monocyte and
macrophage receptor, CLEC5A, in severe inflammatory
response in JEV infection of brain is reported [112]. Misra
et al. [113] have found increased levels of proinflammatory
and anti-inflammatory cytokines and monocyte chemoat-
tractant protein-1 in the serum of rats after JEV infection.
The mechanism of JEV pathogenesis is still unclear [78].
For the development of appropriate and effective therapy
there is an immediate requirement to understand the role of
host factors in JEV-induced neuropathogenesis [114].
Laboratory Diagnosis
Clinical findings with JE are nonspecific and might include
moderately elevated white blood cell count, mild anaemia
and hyponatremia [22, 115]. The clinical suspicion of
encephalitis can be supported with CSF analysis [30, 115].
Usefulness of various conventional magnetic resonance
imaging (MRI) of the brain is better than computed
tomography for detecting JEV associated changes [116].
Recently the utility and usefulness of various conventional
MRI sequences in the diagnosis of acute viral encephalitis
has been evaluated. Viral encephalitis patients were
assessed by clinical evaluation and confirmation was done
by analyzing serum or CSF for dengue, JE, herpes, mea-
sles, echo, coxsackie and polio viruses using ELISA or
PCR. It was found that the MRI changes are correlated with
type of encephalitis and duration of illness [117].
In India, the actual JE burden could be estimated only by
strengthening diagnostic facilities for JE confirmation in
hospitals [10]. The laboratory diagnosis of a confirmed case
of Japanese encephalitis is based on either isolation of virus
from specimen or by antibody detection. Because humans
have low or undetectable levels of viremia by the time dis-
tinctive clinical symptoms are recognized, virus isolation
and nucleic acid amplification tests (NAAT) are insensitive
and should not be used for ruling out a diagnosis of JE [22].
For rapid diagnosis of JE, detection of antigen in CSF using
immunofluorescence [118] and reverse passive haemag-
glutination [119] using poly or monoclonal antibodies has
been successful. The reverse transcriptase polymerase chain
reaction amplification of viral RNA may help in rapid
detection of JEV in samples [13].
Acute phase specimens are tested for JEV-specific IgM
antibodies using a capture enzyme-linked immunosorbent
assay (MAC-ELISA) [22]. Many modifications of MAC-
ELISA such as nitrocellulose membrane based IgM capture
dot enzyme immunoassay (Mac DOT), Avidin biotin system
(ABC Mac ELISA), biotin labelled immunosorbent assay to
Table 1 Clinical picture of JEDisease course Signs and symptoms
Prodromal stage General malaise, fever, anorexia, headache, vomiting. Abdominal pain
& diarrhoea common in children
Acute encephalitic stage Continuous high fever, nuchal rigidity, seizures, muscle weakness,
speech, hearing & vision problems, partial paralysis, altered
sensorium leading to coma
Late convalescent stage Complete recovery in mild cases, but neurological sequelae in severe
cases
Table 2 Vaccines available against Japanese encephalitis virus
Three types produced and used worldwide:
Formalin-inactivated mouse brain derived—produced from
Nakayama strain, safe and effective, most widely used. But
expensive, complicated dosing schedule and side effects
reported
Inactivated hamster kidney cell vaccine—developed from Beijing
P3 strain in China, has efficacy of *75–90% with few side
effects.
Live attenuated hamster kidney cell vaccine—developed from SA
14-14-2 strain by China, has shown high efficacy with single
dose and is cost effective. Being successfully used in India,
Japan, Korea, Thailand etc.
62 Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68
123
sandwich ELISA and antibody capture radioimmunoassay
(ACRIA) have been successfully tested for antibody detec-
tion [13]. Therefore, a positive IgM test has good diagnostic
predictive value, but cross-reaction with arboviruses from
same family can occur. The performance of three commer-
cial JEV IgM antibody capture ELISA (MAC ELISA) kits
has been evaluated with acute encephalitis specimens from
India and Bangladesh and were found to be having high
specificity (95–99.5%), but low sensitivities (15–57%)
[120]. The two commercially available kits in India: Japa-
nese encephalitis—Dengue IgM combo ELISA (Panbio
Diagnostics) and JEV-Chex IgM capture ELISA (Cyton
Diagnostics Limited) for the diagnosis of Japanese
encephalitis in field samples have also been compared
recently, in which the sensitivity and specificity were found
to be 63.6 and 98.4% respectively for XCyton ELISA and 75
and 97.7% for Panbio ELISA [121].
Treatment and Management
There is no specific treatment or specific antiviral agent or
other medication to mitigate the effects of JEV infection
[122]. Thus it becomes highly important that the infection be
managed carefully. Only one in every six deaths is directly
due to JE virus and five out of six are preventable with
prompt and early management, thus bringing down the case
fatality rate of JE from 35–50% to less than 6% [30]. In
different studies, monoclonal antibodies [13], corticoste-
roids, interferon alpha-2a or ribavirin have not been shown
to improve clinical outcome [22]. Swarup et al. [123] have
shown the effect of rosamarinic acid (RA) as an efficient
antiviral agent that reduced JE viral load along with proin-
flammatory cytokines in experimental animals. Therapeutic
role of diethyldithiocarbamate (Anti JEd) have been dem-
onstrated during JEV infection [124]. Nazmi et al. [125]
have demonstrated an effective way to counter the virus
through inhibiting viral replication by using anti-sense
molecules (Vivo-Morpholino) directed against the viral
genome. Mycophenolic acid has been found to inhibit the
replication of JEV in vitro and protected mice in vivo [126].
Outcome and Sequelae
JE has a case-fatality ratio of approximately 20–30% [22,
37, 123] and although some motor deficits improve after
acute illness, 30–50% survivors have neurologic or psy-
chiatric sequelae for years [123, 127]. Drug therapy and
physiotherapy are necessary for survivors with sequelae
like seizures, paralysis, movement disorders, Parkinsonism
and psychiatric problems [30]. Also recurrence of symp-
toms after recovery with fresh neurologic deficits can occur
as the virus remains latent in peripheral lymphocytes, and
can later cause recurrence [99].
Prevention and Control
Preventive measures are very important for minimizing JE
infection. Vector control should include measures such as
eliminating potential mosquito breeding areas, shifting
pigsties and environmental sanitation. Reduction of
breeding source for larvae can be done by water manage-
ment system with intermittent irrigation system, which is
nothing but a strategy of alternate drying and wetting water
management system in the rice fields. Equine and swine in
affected areas should be vaccinated [10]. For humans in
endemic areas, vaccination should be implemented, as well
as personal protective measures. Vector control alone
cannot be relied upon to prevent JE. Rapid identification
and diagnosis is important for protecting the public and our
livestock from this disease. For the disinfection, Biosafety
level three precautions and practices are recommended for
investigators working with this virus [128].
Vaccination
In the last five decades, JE has been effectively controlled
and virtually eliminated in Japan, Taiwan, China and Korea
after implementation of childhood immunization programs
using inactivated mouse brain derived vaccine [129]. In
Cambodia, JE surveillance commenced in 2006, and an
immunization program has been planned [130]. Therefore,
vaccination of the population at risk against JE, appears to
be the most important control measure now, and in the
future. At present, three types of vaccines are in use
worldwide (Table 2 ).
(i) Formalin-inactivated mouse brain derived vaccine is
the only WHO approved vaccine. Asian field trials
have shown that two doses (1–2 weeks apart) provide
an efficacy of 91% [131]. However, three doses (0, 1
and 6 months) are being followed to immunize
children in endemic zone. The vaccine is contraindi-
cated for women who are pregnant and those who are
immunocompromised. It is also being produced from
Beijing-1 strain due to its high cross-reactivity among
the JEV strain. The vaccine is being manufactured by
Research Institute, Kasauli in India [132]. Vaccine has
some common allergic reactions like fever, headache,
malaise, dizziness, erythema, swelling and tenderness
[133]. The mucocutaneous and neurologic allergic
reactions reported after JE vaccination, may vary in
frequency, and therefore these should be evaluated
Proc. Natl. Acad. Sci. Sect B. Biol. Sci. (January–March 2012) 82(1):55–68 63
123
very carefully yearly [133]. Though safe and effective,
the vaccine has limitations in terms of cost, availabil-
ity and lack of long term immunity.
(ii) Inactivated primary hamster kidney cell derived
vaccine has been developed in China. The efficacy
was found to be 76–90% in a field trial in China [134]
and there were fewer side effects. A vero-cell culture
derived inactivated vaccine from attenuated SA
14-14-2 strain has been developed, which induced
high titers of neutralizing antibodies in experimental
animals [135]. Another vero cell-culture derived
inactivated JE vaccine using Indian isolate (P
20778) has been developed. It generated high titers
of anti-JEV antibodies in mice [136].
(iii) A cell-culture derived live, attenuated SA 14-14-2
vaccine from China has recently become interna-
tionally available and is increasingly replacing the
inactivated, mouse brain-derived vaccine in Asia. A
single dose of the vaccine demonstrated 96%
efficacy after 5 years [137]. The vaccine is very
cost-effective and appears to be safe and neuroat-
tenuation is stable [13]. The government of India
introduced the SA 14-14-2 vaccine in 2006, and
nearly 50 million children 1–15 years of age have
been reached through vaccination campaigns and
routine immunization [138].
JE vaccine candidates in late-stage of development
include a live, attenuated chimeric virus vaccine (IMO-
JEV�) and an inactivated Vero cell-derived vaccine; each
based on the SA 14-14-2 strain. IMOJEV� (previously
known as ChimeriVaxTM
—JE), is a novel recombinant chi-
meric vaccine, developed using the yellow fever virus
(YFV) vaccine vector as its backbone. It is found to be safe,
highly immunogenic and capable of inducing long-lasting
immunity in both preclinical and clinical trials [139].
Additionally, 2 inactivated, Vero cell-derived vaccines
based on the Beijing-1 strain are being developed in Japan
[140]. Second generation recombinant vaccines are also
being developed, where signal sequences of PrM with genes
encoding PrM and E proteins are packaged into vectors, e.g.
E. coli and vaccinia [141]. Studies on plasmid DNA-based
JEV vaccine are also giving promising results on experi-
mental animals [142] and in one of the study; the JEV
candidate DNA vaccine was capable of generating protec-
tive levels of neutralizing antibodies in rhesus monkeys
[143]. DNAzymes (Dzs) that cleave the RNA sequence of
the 30-NCR of JEV genome in vitro, on intra-cerebral
administration in JEV-infected mice led to more than
99.99% inhibition of virus replication in brain, resulting in a
dose-dependent extended life-span or complete recovery of
the infected animals [144]. New vaccine development, along
with progress in surveillance and immunization, offers
promise for sustainable control of clinical JE. To achieve
this, global partners are working together to develop a
strategic plan for JE control by 2015 [145].
Future Challenges
Currently in India, since the risk of JE is limited to focal
areas, its immunization is not included in the National
Immunization Program. It is recommended for active
immunization only in JE prone areas [30]. There is a need for
a proper pilot trial on JE vaccination involving hyperen-
demic districts for making a policy on mass JE vaccination
in the community. JE vaccination should be considered in
travelers, who are likely to spend[30 days in a JE-endemic
country or travelers on brief trips if they have extensive
outdoor or night time exposure in rural areas during periods
of active transmission [22, 146]. It is also been reported that
routine availability of vaccine and information, education
and communication strategies play important roles in
improving knowledge and achieving high vaccination rates
[147]. For the development of effective therapy, there is an
immediate requirement to understand the host factors in
JEV-induced neuropathogenesis [109]. Because the live
attenuated JE vaccine used in India is derived from GIII
strain SA14-14-2, vaccine’s efficacy to protect against GI
must be evaluated. Also the expansion of GI JEV into other
parts of India should be continuously tracked [9]. It is also
necessary to elucidate the ecology of migrating reservoir
animals. Genotyping of both the mosquitoes and JEV should
be done concurrently at many locations in temperate and
tropical regions simultaneously. Any distinct biological
markers, like susceptibility of replaced strains in mosqui-
toes, birds etc. should be elucidated.
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