introduction lecture 2014 - arvutiteaduse instituut · 2014-09-08 · bioinformatics course...
TRANSCRIPT
Bioinformatics Course
Bacillus coagulans
Staphylococcus aureus
Enterococcus sulfureus
Streptococcus bovis
Lactobacillus acidophilus
Spiroplasma tiawanense
Clostridium butyricum
Heliobacterium gestii
Thermoanaerobacter lacticus
Deinococcus radiodurans
Flavobacterium odoratum
Chlamydia pneum
oniae
Fusobacterium perfoetens
Escherichia coli
Salmonella agona
Vibrio aestuarianus
Pseudomonas m
endocina
Legionella pneumophila
Neisseria gonorrhoeae
Burkholderia solanacearum
Agrobacterium vitis
Rhizobium
leguminosarum
Rickettsia m
ontana
Cam
pylobacter hyointestinalis
Helicobacter cholecystus
Desulfoacinum
infernum
Myxococcus coralloides
Spirochaeta alkalica
Spirulina subsalsa
Chlorobium
phaeovibrioides
Trichotomospora caesia
Streptomyces lavendulae
Microbacterium
lacticum
Nocardia calcarea
Corynebacterium
acetoacidophilum
Kineococcus aurantiacus
Geoderm
atophilus obscurus
Bifidobacterium catenulatum
Chloroflexus aurantiacus
Aquifex pyrophilus
Thermotoga m
aritima
Pyrodictium occultum
Thermoproteus tenax
Thermococcus stetteri
Thermococcus fum
icolans
Methanococcus jannaschii A
Methanococcus m
aripaludis
Methanobacterium
bryantii
Methanobacterium
subterraneum
Methanosarcina siciliae
Thermoplasm
a acidophilum
Halobacterium
marism
ortui
Haloferax denitrificans
Coem
ansia reversa
Spirodactylon aureum
Coem
ansia braziliensis
Dipsacom
yces acuminosporus
Linderina pennispora
Kickxella alabastrina
Martensiom
yces pterosporus
Smittium
culisetae
Capniom
yces stellatus
Furculomyces boom
erangus
Genistelloides hibernus
Spiromyces aspiralis
Spiromyces m
inutus
Conidiobolus throm
boides
Macrobiotophthora verm
icola
Strongwellsea castrans
Pandora neoaphidis
Zoophthora culisetae
Zoophthora radicans
Eryniopsis ptycopterae
Entomophaga aulicae
Entomophthora m
uscae
Entomophthora schizophora
Conidiobolus coronatus
Mucor ram
annianus
Mucor m
ucedo
Mucor racem
osus
Syncephalastrum racem
osum
Basidiobolus ranarum
Endogone pisiformis
Mortierella polycephala
Acaulospora rugosa
Acaulospora spinosa
Entrophospora columbiana
Glom
us mosseae
Glom
us cf geosporum
Glom
us mossae
Glom
us manihotis
Glom
us intraradices
Glom
us etunicatum
Glom
us claroideum
Glom
us versiforme
Scuttellospora pellucida
Scutellospora castanea
Scutellospora heterogama
Scuttellospora dipapillosa
Gigaspora albida
Gigaspora m
argarita
Gigaspora decipiens
Gigaspora gigantea
Acaulospora gerdemannii
Geosiphon pyriform
e
Aleurodiscus botryosus
Stereum hirsutum
Gloeocystidiellum
leucoxantha
Stereum annosum
Heterobasidion annosum
Laxitextum bicolor
Hericium
ramosum
Hericium
erinaceum
Lentinellus ursinus
Lentinellus omphalodes
Clavicorona pyxidata
Auriscalpium vulgare
Bondarzew
ia berkeleyi
Scytinostrom
a alutum
Peniophora nuda
Echinodontium
tinctorium
Russula com
pacta
Inonotus hispidus
Phellinus igniarius
Trichaptum biform
e
Trichaptum abietinum
Trichaptum fusco violaceum
Trichaptum laricinum
Basidioradulum
radula
Coltricia perennis
Schizopora paradoxa
Hyphodontia alutaria
Sphaerobolus stellatus
Geastrum
saccatum
Ram
aria stricta
Clavariadelphus pistillaris
Gom
phus floccosus
Pseudocolus fusiform
is
Auricularia polytricha
Auricularia auricula
Pseudohydnum
gelatinosum
Boletus satanas
Xerocom
us chrysenteron
Calostom
a ravenelii
Calostom
a cinnabarinum
Scleroderm
a citrina
Paxillus panuoides
Leucoagaricus gongylophorus
Basid sym
b of Atta cephalotes
Basid sym
b of Sericom
yrmex bond
Basid sym
b of Trachymyrm
ex bugn
Basid sym
b of Cyphom
yrmex rim
os
Basid sym
b of Apterostigm
a coll
Athelia bom
bacina
Panellus stipticus
Typhula phacorrhiza
Panellus serotinus
Tricholoma m
atsutake
Om
phalina umbellifera
Pleurotus ostreatus
Coprinus cinereus
Cortinarius iodes
Lepiota procera
Crucibulum
laeve
Stropharia rugosoannulata
Calvatia gigantea
Cyathus striatus
Lentinula lateritia
Am
anita muscaria
Cantharellus tubaeform
is
Dictyonem
a pavonia
Schizophyllum
comm
une
Fistulina hepatica
Pleurotus tuberregium
Agaricus bisporus
Tulostoma m
acrocephala
Pluteus petasatus
Termitom
yces cartilagineus
Termitom
yces albuminosus
Ceriporia purpurea
Bjerkandera adusta
Phlebia radiata
Phanerochaete chrysosporium
Rhizoctonia zeae
Tretopileus sphaerophorus
Dentocorticium
sulphurellum
Fomes fom
entarius
Lentinus tigrinusG
anoderma australe
Trametes suaveolens
Polyporus squamosus
Laetiporus sulphureus
Phaeolus schw
einitzii
Sparassis spathulata
Antrodia carbonica
Daedalea quercina
Fomitopsis pinicola
Spongipellis unicolor
Panus rudisM
eripilus giganteus
Albatrellus syringae
Gloeophyllum
sepiarium
Hydnum
repandum
Multiclavula m
ucida
Clavulina cristata
Botryobasidium
subcoronatum
Botryobasidium
isabellinum
Thanatephorus cucumeris
Thanatephorus praticola
Heterotextus alpinus
Calocera cornea
Dacrym
yces chrysospermus
Dacrym
yces stillatus
Tsuchiaea wingfieldii
Cryptococcus neoform
ans
Filobasidiella neoformans
Bullera dendrophila
Trimorphom
yces papilionaceus
Bullera m
iyagianaB
ullera globosporaTrem
ella globosporaB
ullera pseudoalbaB
ullera penniseticolaB
ullera hannaeB
ullera albaB
ullera unicaTrem
ella moriform
isFellom
yces distyliiKockovaella schim
aeFellom
yces ogasawarensis
Kockovaella phaffiiKockovaella m
achilophilaKockovaella im
perataeKockovaella sacchariKockovaella thailandicaFellom
yces fuzhouensisFellom
yces penicillatusFellom
yces polyborusFellom
yces horovitziaeS
terigmatosporidium
polymorphum
Fibulobasidium inconspicuum
Sirobasidium
magnum
Bullera coprosm
aensisB
ullera oryzaeB
ullera derxiiB
ullera sinensisB
ullera mrakii
Bullera huiaensis
Bul
lera
cro
cea
Bul
lera
arm
enia
caB
ulle
ra v
aria
bilis
Tric
hosp
oron
cut
aneu
mTr
icho
spor
on ja
poni
cum
Trem
ella
folia
cea
Hol
term
anni
a co
rnifo
rmis
Filo
basi
dium
flor
iform
eM
raki
a ps
ychr
ophi
liaM
raki
a fri
gida
Ude
niom
yces
meg
alos
poru
sU
deni
omyc
es p
unic
eus
Ude
niom
yces
piri
cola
Bul
lera
gra
ndis
pora
Leuc
ospo
ridiu
m la
ri m
arin
iC
ysto
filob
asid
ium
cap
itatu
mP
haffi
a rh
odoz
yma
Tille
tia c
arie
sTi
lletia
ria a
nom
ala
Tille
tiops
is fu
lves
cens
Tille
tiops
is fl
ava
Tille
tiops
is m
inor
Tille
tiops
is a
lbes
cens
Tille
tiops
is w
ashi
ngto
nens
isTi
lletio
psis
pal
lesc
ens
Ust
ilago
hor
dei
Ust
ilago
may
dis
Ust
ilago
shi
raia
naG
raph
iola
cyl
indr
ica
Gra
phio
la p
hoen
icis
Cam
ptob
asid
ium
hyd
roph
ilum
Sym
podi
omyc
opsi
s pa
phio
pedi
li
Kond
oa m
alvi
nella
Ben
sing
toni
a m
isca
nthi
Ben
sing
toni
a su
bros
ea
Ben
sing
toni
a yu
ccic
ola
Ben
sing
toni
a ph
ylla
dus
Myc
oglo
ea m
acro
spor
a
Ste
rigm
atom
yces
hal
ophi
lus
Aga
ricos
tilbu
m h
ypha
enes
Ben
sing
toni
a in
gold
iiB
ensi
ngto
nia
mus
ae
Kurtz
man
omyc
es n
ecta
irei
Chi
onos
phae
ra a
poba
sidi
alis
Spo
robo
lom
yces
xan
thus
Ben
sing
toni
a na
gano
ensi
s
Ben
sing
toni
a ci
liata
Mix
ia o
smun
dae
Rho
dosp
orid
ium
toru
loid
es
Rho
doto
rula
glu
tinis
Rho
doto
rula
gra
min
is
Rho
doto
rula
muc
ilagi
nosa
Rho
dosp
orid
ium
fluv
iale
Spo
ridio
bolu
s jo
hnso
nii
Spo
robo
lom
yces
rose
us
Ben
sing
toni
a ya
mat
oana
Zym
oxen
oglo
ea e
rioph
ori
Mic
robo
tryum
vio
lace
um
Leuc
ospo
ridiu
m s
cotti
i
Ben
sing
toni
a in
term
edia
Het
erog
astri
dium
pyc
nidi
oide
um
Hya
lops
ora
poly
podi
i
Perid
erm
ium
har
knes
sii
Cro
narti
um ri
bico
la
Ure
dino
psis
inte
rmed
ia
Phy
sope
lla a
mpe
lops
idis
Gym
noco
nia
nite
ns
Puc
cini
a su
zuta
ke
Nys
sops
ora
echi
nata
Aec
idiu
m e
pim
edii
Rho
doto
rula
min
uta
Ery
thro
basi
dium
has
egaw
ianu
m
Rho
doto
rula
lact
osa
Rho
dosp
orid
ium
dac
ryoi
dum
Hel
icob
asid
ium
pur
pure
um
Hel
icob
asid
ium
mom
pa
Hel
icob
asid
ium
cor
ticio
ides
Hel
icog
loea
var
iabi
lis
Gra
phiu
m p
utre
dini
s
Gra
phiu
m te
cton
ae
Petri
ella
set
ifera
Lom
ento
spor
a pr
olific
ans
Pse
udal
lesc
heria
boy
dii
Pse
udal
lesc
heria
ellip
soid
ea
Lign
inco
la la
evis
Nai
s in
orna
ta
Ani
ptod
era
ches
apea
kens
is
Hal
osar
phei
a re
torq
uens
Mic
roas
cus
cirro
sus
Gra
phiu
m p
enic
illioi
des
Cer
atoc
ystis
fim
bria
ta
Fusa
rium
cul
mor
um
Gib
bere
lla p
ulic
aris
Fusa
rium
cer
ealis
Fusa
rium
equ
iset
i
Nec
tria
haem
atoc
occa
Fusa
rium
oxy
spor
um
Gib
bere
lla a
vena
cea
Fusa
rium
mer
ism
oide
s
Paec
ilom
yces
tenu
ipes
Cor
dyce
pioi
deus
bis
poru
s
Ham
ilton
aphi
s st
yrac
i sym
b
Geo
smith
ia p
utte
rillii
Geo
smith
ia la
vend
ula
Spi
cellu
m ro
seum
Myc
oara
chis
inve
rsa
Nec
tria
ochr
oleu
ca
Nec
tria
aure
oful
va
Cha
etop
sina
fulv
a
Hyp
ocre
a lu
tea
Hyp
omyc
es c
hrys
ospe
rmus
Glo
mer
ella
cin
gula
ta
Verti
cilliu
m d
ahlia
e
Hyp
oxyl
on fr
agifo
rme
Xyl
aria
car
poph
ila
Xyl
aria
pol
ymor
pha
Ros
ellin
ia n
ecat
rix
Obo
larin
a dr
yoph
ila
Kio
noch
aeta
ivor
iens
is
Kio
noch
aeta
spi
ssa
Kion
ocha
eta
ram
ifera
Mel
iola
judd
iana
Mel
iola
nie
ssle
ana
Podo
spor
a an
serin
a
Neu
rosp
ora
cras
sa
Sor
daria
fim
icol
a
Cha
etom
ium
ela
tum
Cam
arop
s m
icros
pora
Asc
ovag
inos
pora
ste
llipal
a
Cry
phon
ectri
a pa
rasi
tica
Cry
phon
ectri
a ra
dica
lis
Cry
phon
ectri
a ha
vane
nsis
Cry
phon
ectri
a cu
bens
is
Endo
thia
gyr
osa
Leuc
osto
ma
pers
ooni
i
Oph
iost
oma
euro
phio
ides
Oph
iost
oma
cucu
llatu
m
Oph
iost
oma
aino
ae
Oph
iost
oma
sten
ocer
as
Spo
roth
rix s
chen
ckii
Oph
iost
oma
ulm
i
Oph
iost
oma
peni
cilla
tum
Peso
tum
frag
rans
Oph
iost
oma
bico
lor
Oph
iost
oma
pice
ae
Pseu
doha
lone
ctria
falc
ata
Oph
ioce
ras
lept
ospo
rum
Mag
napo
rthe
grise
a
Lulw
orth
ia fu
cico
la
Spa
thul
aria
flav
ida
Cud
onia
con
fusa
Rhy
tism
a sa
licin
um
Mon
ilinia
laxa
Mon
ilinia
fruc
ticol
a
Scle
rotin
ia s
cler
otio
rum
Amyl
ocar
pus
ence
phal
oide
s
Neo
bulg
aria
pre
mno
phila
Blum
eria
gra
min
is
Phy
llact
inia
gut
tata
Cyt
taria
dar
win
ii
Thel
ebol
us s
terc
oreu
s
Asco
zonu
s w
oolh
open
sis
Leot
ia lu
bric
a
Mic
rogl
ossu
m v
iride
Geo
myc
es p
anno
rum
Geo
myc
es p
anno
rum
var
asp
erul
a
Bulg
aria
inqu
inan
s
Lept
osph
aeria
bico
lor
Cuc
urbi
doth
is p
ityop
hila
Kirs
chst
eini
othe
lia e
late
rasc
us
Hel
icas
cus
kana
loan
us
Pyre
noph
ora
trich
osto
ma
Pyre
noph
ora
tritic
i rep
entis
Coc
hlio
bolu
s sa
tivus
Alte
rnar
ia b
rass
icae
Cla
thro
spor
a di
plos
pora
Alte
rnar
ia a
ltern
ata
Alte
rnar
ia b
rass
icic
ola
Alte
rnar
ia ra
phan
i
Pleo
spor
a he
rbar
um
Seto
spha
eria
rost
rata
Pleo
spor
a be
tae
Lept
osph
aeria
dol
iolu
m
Lept
osph
aeria
mac
ulan
s
Cuc
urbi
taria
elo
ngat
a
Lept
osph
aeria
micr
osco
pica
Oph
iobo
lus
herp
otric
hus
Phae
osph
aeria
nod
orum
Cuc
urbi
taria
ber
berid
is
Pleo
spor
a ru
dis
Wes
terd
ykel
la d
ispe
rsa
Loph
iost
oma
cren
atum
Spor
omia
ligni
cola
Mon
odict
ys c
asta
neae
Kirs
chst
eini
othe
lia m
aritim
a
Her
potri
chia
juni
peri
Myc
osph
aere
lla m
ycop
appi
Her
potri
chia
diff
usa
Den
dryp
hiop
sis a
tra
Botry
osph
aeria
rhod
ina
Botry
osph
aeria
ribi
s
Phae
oscle
ra d
emat
ioid
es
Dot
hide
a in
scul
pta
Dot
hide
a hi
ppop
haeo
s
Aure
obas
idiu
m p
ullu
lans
Coc
codi
nium
bar
tsch
ii
Sarc
inom
yces
cru
stac
eus
Siph
ula
cera
tites
Pertu
saria
trac
hyth
allin
a
Dip
losc
hist
es o
cella
tus
var a
l
Anam
ylops
ora
pulch
errim
a
Trap
elia
pla
codi
oide
s
Trap
elia
invo
luta
Plac
opsi
s ge
lida
Cono
trem
a po
pulor
um
Cya
node
rmel
la v
iridu
la
Gya
lect
a ul
mi
Neph
rom
a ar
cticu
m
Peltig
era
neop
olyd
acty
la
Solo
rina
croc
ea
Pseu
deve
rnia
cla
doni
ae
Pilo
phor
us a
cicul
aris
Clad
ia a
ggre
gata
Cla
doni
a be
llidiflo
ra
Ster
eoca
ulon
ram
ulos
um
Leca
nora
disp
ersa
Squa
mar
ina
lent
iger
a
Rhizo
carp
on g
eogr
aphi
cum
Spha
erop
horu
s gl
obos
us
Leifid
ium
tene
rum
Buno
doph
oron
scr
obicu
latu
m
Xant
horia
ele
gans
Meg
alosp
ora
sulph
urat
a
Lecid
ea fu
scoa
tra
Porp
idia
cru
stul
ata
Calic
ium
ads
pers
um
Texo
spor
ium
san
cti ja
cobi
Thelo
mm
a m
amm
osum
Cyph
eliu
m in
quin
ans
Chro
moc
leist
a m
alac
hite
a
Peni
cilliu
m n
otat
um
Eupe
nicil
lium
cru
stac
eum
Peni
cilliu
m fr
eii
Peni
cilliu
m n
amys
low
skii
Geo
smith
ia n
amys
lows
kii
Eupe
nicil
lium
java
nicu
m
Mer
imbla
inge
lheim
ense
Ham
igera
ave
llane
a
Hem
icarp
ente
les o
rnat
us
Aspe
rgillu
s fla
vus
Aspe
rgillu
s or
yzae
Aspe
rgillu
s no
miu
s
Aspe
rgillu
s pa
rasit
icus
Aspe
rgillu
s ta
mar
ii
Aspe
rgillu
s so
jae
Aspe
rgillu
s av
enac
eus
Mon
ascu
s pur
pure
us
Euro
tium
her
bario
rum
Euro
tium
rubr
um
Aspe
rgillu
s re
stric
tus
Aspe
rgillu
s us
tus
Aspe
rgillu
s ve
rsico
lor
Emer
icella
nid
ulan
s
Aspe
rgillu
s ni
dula
ns
Fenn
ellia
flavip
es
Aspe
rgillu
s te
rreus
Aspe
rgillu
s we
ntii
Chae
tosa
rtory
a cr
emea
Neos
arto
rya
fisch
eri
Aspe
rgillu
s fu
mig
atus
Aspe
rgillu
s cla
vatu
s
Aspe
rgillu
s och
race
us
Aspe
rgillu
s ni
ger
Aspe
rgillu
s aw
amor
ii
Aspe
rgillu
s ce
rvinu
s
Aspe
rgillu
s ca
ndid
us
Aspe
rgillu
s zo
natu
s
Aspe
rgillu
s spa
rsus
Byss
ochl
amys
nive
a
Paec
ilom
yces
vario
tii
Ther
moa
scus
crus
tace
us
Geo
smith
ia cy
lindr
ospo
ra
Talar
omyc
es e
burn
eus
Talar
omyc
es e
mer
sonii
Talar
omyc
es fla
vus
Talar
omyc
es b
acilli
spor
us
Elap
hom
yces
leve
illei
Elap
hom
yces
mac
ulatu
s
Auxa
rthro
n zu
ffianu
m
Malb
ranc
hea
filam
ento
sa
Malb
ranc
hea
dend
ritica
Malb
ranc
hea
albolu
tea
Uncin
ocar
pus r
eesii
Cocc
idioid
es im
mitis
Onyge
na eq
uina
Renis
pora
flavis
sima
Cten
omyc
es se
rratu
s
Trich
ophy
ton ru
brum
Gymno
asco
ideus
pet
alosp
orus
Chry
sosp
orium
parv
um
Blas
tom
yces
der
mat
itidis
Histo
plasm
a ca
psula
tum
Histop
lasm
a ca
psula
tum
ssp
farci
Histo
plasm
a ca
psula
tum
ssp
dubo
i
Asco
spha
era
apis
Erem
ascu
s albu
s
Malb
ranc
hea g
ypse
a
Phae
oann
ellom
yces
eleg
ans
Nads
oniel
la nig
ra
Exop
hiala
jeans
elmei
Phae
ococ
com
yces
exop
hialae
Capro
nia p
ilose
lla
Exop
hiala
man
sonii
Pullu
laria
proto
troph
a
Exop
hiala
derm
atitid
is
Sarci
nom
yces
phae
omur
iform
is
Capro
nia m
anso
nii
Graph
ium ca
licioi
des
Ceram
othyri
um lin
naea
e
Conios
poriu
m ap
ollini
s
Conios
poriu
m pe
rfora
ns
Chaen
othec
opsis
savo
nica
Sphin
ctrina
turb
inata
Sten
ocyb
e pull
atula
Myc
ocali
cium
albo
nigru
m
Lasa
llia ro
ssica
Umbil
icaria
subg
labra
Steg
obium
panic
eum
yeas
t like
sym
Lasio
derm
a ser
ricor
ne ye
ast li
ke
Monac
rosp
orium
ellip
sosp
ora
Orbilia
auric
olor
Arthr
obotr
ys co
noide
s
Duddin
gtonia
flagr
ans
Monac
rospo
rium ge
phyro
paga
Monac
rosp
orium
hapto
tylum
Arthr
obotr
ys ro
busta
Dactyl
ella o
xysp
ora
Dactyl
ella r
hopa
lota
Arthr
obotr
ys da
ctyloi
des
Orbilia
delic
atula
Choiro
myces
mea
ndrifo
rmis
Choiro
myces
veno
sus
Tube
r mag
natum
Tube
r pan
niferu
m
Tube
r exc
avatu
m
Tube
r rapa
eodo
rum
Tube
r gibb
osum
Tube
r borc
hii
Dingley
a ver
ruco
sa
Laby
rintho
myces
variu
s
Redde
llomyc
es do
nkii
Wyn
nella
silvi
color
Barssia
oreg
onen
sis
Balsam
ia vu
lgaris
Balsam
ia mag
nata
Helvell
a lac
unos
a
Helvell
a ter
restr
is
Underw
oodia
colum
naris
Calosc
ypha
fulge
ns
Pulvinu
la arc
heri
Chalaz
ion he
lvetic
um
Ascod
esmis
spha
erosp
ora
Glaziel
la au
rantia
ca
Aleuria
auran
tia
Inerm
isia ag
grega
ta
Trich
opha
ea hy
brida
Wilc
oxina
miko
lae
Scutel
linia
scute
llata
Leuc
oscy
pha o
roarct
ica
Pyrone
ma dom
estic
um
Otidea
lepo
rina
Neottie
lla ru
tilans
Pauroc
otylis
pila
Geopy
xis ca
rbona
ria
Tarze
tta ca
tinus
Cooke
ina su
lcipe
s
Sarcos
cyph
a aus
triaca
Micros
toma p
rotrac
ta
Desmaz
ierell
a acic
ola
Plectan
ia rhy
tidia
Sarcos
oma g
lobos
um
Urnula
hiemali
s
Morche
lla es
culen
ta
Morche
lla el
ata
Verpa
conic
a
Verpa
bohe
mica
Leuc
angiu
m carth
usian
um
Fische
rula s
ubca
ulis
Disciot
is ve
nosa
Hydno
trya t
ulasn
ei
Gyromitra
escu
lenta
Gyromitra
mela
leuco
ides
Pseud
orhizin
a cali
fornic
a
Gyromitra
mon
tana
Discina
mac
rospo
ra
Hydno
trya c
erebri
formis
Rhizina
undu
lata
Cazia
flexia
scus
Terfe
zia ar
enari
a
Peziza
succ
osa
Peziza
quele
pidoti
a
Terfe
zia te
rfezio
ides
Pachy
phloe
us m
elano
xanth
us
Boudie
ra ac
antho
spora
Peziza
badia
Theco
theus
holm
skjold
ii
Ascob
olus l
ineola
tus
Pichia
mexica
na
Candid
a con
globa
ta
Candid
a aas
eri
Candid
a buty
ri
Candid
a inse
ctorum
Candid
a den
drone
ma
Candid
a ten
uis
Candid
a nae
oden
dra
Candid
a didd
ensia
e
Candid
a atla
ntica
Candid
a atm
osph
aerica
Candid
a buin
ensis
Candid
a frie
drich
ii
Candid
a mem
branifa
ciens
Pichia
triang
ularis
Candid
a multi
gemmis
Candid
a oleo
phila
Candid
a bole
ticola
Candida schatav
ii
Candid
a laure
liae
Candida kriss
ii
Candid
a san
tamaria
e var
membra
Candid
a ralu
nens
is
Candid
a san
tamari
ae va
r santa
m
Candid
a bee
chii
Candid
a zeyl
anoid
es
Candid
a sop
hiae r
egina
e
Candid
a que
rcitrus
a
Candida natalensis
Candid
a frag
i
Candida psychrophila
Candida glucosophila
Candida xesto
bii
Candid
a fukuy
amae
nsis
Candid
a ferm
entica
rens
Pichia guillie
rmondii
Debaryomyce
s hansenii v
ar hans
Debaryomyce
s hansenii v
ar fabr
Taphrina farlowii
Yamadazyma guillie
rmondii
Pichia farin
osa
Debaryomyce
s udenii
Debaryomyce
s caste
llii
Debaryomyce
s hansenii
Candida sojae
Candida tropica
lis
Candida albicans
Candida dubliniensis
Candida maltosa
Candida viswanathii
Candida lodderae
Candida parapsilosis
Lodderomyces e
longisporus
Candida shehatae va
r insecto
sa
Candida shehatae va
r lignosa
Candida shehatae va
r shehatae
Candida palmioleophila
Candida fluvia
tilis
Candida saitoana
Candida pseudoglaebosa
Candida glaebosa
Candida insectamans
Candida lyxosophila
Candida kruisii
Candida tanzawaensis
Candida sake
Candida austromarina
Candida coipomoensis
Candida ergastensis
Pichia angusta
Williopsis
salico
rniae
Endomyces fi
buliger
Saccharomyco
psis fibuligera
Saccharomyco
psis capsularis
Kluyveromyce
s nonfermentati
Kluyveromyce
s aestu
arii
Kluyveromyce
s marxia
nus
Kluyveromyce
s lactis
Kluyveromyce
s dobzhanskii
Kluyveromyce
s wicke
rhamii
Holleya sinecauda
Zygosaccharomyce
s mellis
Zygosaccharomyce
s rouxii
Zygosaccharomyce
s bisporus
Zygosaccharomyce
s lentus
Zygosaccharomyce
s bailii
Arxiozym
a telluris
Saccharomyce
s dairensis
Saccharomyce
s serva
zzii
Saccharomyce
s unisporus
Saccharomyce
s transva
alensis
Zygosaccharomyce
s mrakii
Torulaspora globosa
Torulaspora delbrueckii
Torulaspora pretoriensis
Zygosaccharomyce
s micro
ellipsoide
Candida colliculosa
Kazachstania viticola
Kluyveromyce
s blattae
Kluyveromyce
s phaffii
Zygosaccharomyce
s florentinus
Candida glabrata
Kluyveromyces delphensis
Saccharomyce
s pastorianus
Saccharomyce
s cerevisi
ae
Saccharomyce
s cerevisi
ae 2
Saccharomyce
s bayanus
Saccharomyce
s paradoxus
Kluyveromyce
s polysporus
Kluyveromyces yarrowii
Kluyveromyce
s lodderae
Saccharomyces rosinii
Kluyveromyces africanus
Saccharomyce
s spencerorum
Saccharomyces exiguus
Saccharomyces barnettii
Saccharomyces castellii
Zygosaccharomyce
s fermentati
Saccharomyces kluyveri
Kluyveromyces thermotolerans
Kluyveromyces waltii
Saccharomycodes ludwigii
Hanseniaspora uvarum
Williopsis pratensis
Williopsis californica
Starmera amethionina var pachy
Starmera amethionina var ameth
Starmera caribaea
Pichia anomala
Williopsis saturnus
Williopsis saturnus var mrakii
Williopsis mucosa
Pachysolen tannophilus
Candida chilensis
Candida cylindracea
Candida savonica
Candida mesenterica
Candida suecica
Phaffomyces antillensis
Phaffomyces opuntiae
Phaffomyces thermotolerans
Yarrowia lipolyticaCandida rugosa
Candida catenulata
Candida pseudointermedia
Candida intermedia
Candida akabanensis
Candida oregonensis
Candida haemulonii
Candida tsuchiyae
Clavispora lusitaniae
Candida melibiosicaCandida torresii
Metschnikowia bicuspidataCandida agrestis
Metschnikowia reukaufii
Metschnikowia pulcherrimaCandida mogii
Brettanomyces bruxellensis
Dekkera bruxellensisDekkera anomala
Brettanomyces anomalus
Dekkera custersiana
Dekkera naardenensis
Candida insectalensCandida silvatica
Issatchenkia orientalis
Pichia membranaefaciens
Candida spandovensisCandida apicolaCandida bombi
Starmerella bombicola
Candida geocharesCandida vaccinii
Endomyces geotrichum
Galactomyces geotrichumDipodascus albidus
Candida chiropterorumCandida valdivianaCandida drimydis
Waltomyces lipofer
Dipodascopsis uninucleata
Protomyces macrosporus
Protomyces pachydermusProtomyces inouyei
Protomyces lactucaeTaphrina virginicaTaphrina carnea
Taphrina pruni subcordataeTaphrina mirabilisTaphrina nana
Taphrina pruniTaphrina ulmi
Taphrina communisTaphrina flavorubraTaphrina populina
Taphrina deformansTaphrina wiesneri
Taphrina robinsonianaTaphrina letifera
Neolecta vitellinaNeolecta irregularis
Saitoella complicata
Schizosaccharomyces pombe
Schizosaccharomyces japonicusPneumocystis carinii
Calicium tricolorTaphrina maculans
Taphrina californicaChytridium confervae
Neocallimastix frontalisNeocallimastix joyoniiPiromonas communis
Spizellomyces acuminatus
Allomyces macrogynus
Blastocladiella emersoniiChrysops nigerDrosophila melanogaster
Ceratitis capitataOrnithoica vicina
Nephrotoma altissimaLutzomyia shannoni
Aedes albopictusAedes aegyptiAedes punctor
Toxorhynchites ambionensisCulex tritaeniorhynchus
Anopheles psuedopunctipennisAnopheles albimanus
Eucorethra underwoodiDixella cornutaCulicoides variipennis
Amblabesmia rhampheSimulium vittatumXenos vesparumStylops melittae
Mengenilla chobautiGalleria mellonella
Archaeopsylla erinaceiPanorpa germanica
Anisochrysa carneaOliarces claraMonolobus ovalipennis
Antarctonomus complanatusLoricera foveataLoricera pilicornis pilicornis
Amarotypus edwardsiBembidion mexicanum
Bembidion levettei carrianumAsaphidion curtumDiplous californicusPatrobus longicornisPericompsus laetulusDiplochaetus planatusZolus helmsiMerizodus angusticollisSloaneana tasmaniaeBatesiana hilarisSchizogenius falliClivina ferreaDyschirius sphaericollisMelisodera picipennisMecyclothorax vulcansAmblytelus curtusApotomus rufithoraxBroscosoma relictumCreobius eydouxiGalerita lecontei leconteiPseudaptinus rufulusAptinus displosorPterostichus melanariusTetragonoderus latipennisDiscoderus cordicollisChlaenius ruficaudaCalybe laetulaAmara apricariaAgonum extensicolleCymindis punctigeraLoxandrus n sp nr amplithoraCnemalobus sulciferusCatapiesis brasiliensisMorion aridusBrachinus armigerBrachinus hirsutusPheropsophus aequinoctialisPasimachus atronitensScarites subterraneusCarenum interruptumSiagona europaeaSiagona jennisoniClinidium calcaratumOmoglymmius hamatusOmus californicusCicindela sedecimpunctataMetrius contractusPachyteles striolaCymbionotum semelederiCymbionotum pictulumGehringia olympicaPromecognathus crassusLaccocenus ambiguusOmophron obliteratum
Psydrus piceusCeroglossus chilensisPamborus gueriniiCalosoma scrutatorCarabus nemoralisScaphinotus petersi catalinaeCychrus italicusOpisthius richardsoniLeistus ferruginosusNebria hudsonicaNotiophilus semiopacusTrachypachus gibbsiiTrachypachus holmbergiSystolosoma lateritiumElaphrus californicus
Elaphrus clairvilleiBlethisa multipunctata aurataMecodema fulgidum
Oregus aereusSuphis inflatusCopelatus chevrolati renovatusHydroscapha natans
Xanthopyga cactiDynastes grantiTenebrio molitor
Meloe proscarabaeusClambus arnetti
Phaeostigma notataLeptothorax acervorum
Polistes dominulusGraphosoma lineatumRaphigaster nebulosa
Lygus hesperusHemiowoodwardia wilsoni
Hackeriella veitchiSpissistilus festinusProkelisia marginataPhilaenus spumariusOkanagana utahensis
Trioza eugeniaePealius kelloggii
Acyrthosiphon pisumAonidiella aurantii
Batrachideidae gen spCarausius morosusAcheta domesticusMesoperlina pecircai
Aeschna cyaneaLepisma saccharina
Lepidocyrtus paradoxusCrossodonthina koreana
Hypogastrura dolsanaPodura aquatica
Theatops erythrocephalaScolopendra cingulata
Cryptops trisulcatus
Craterostigmus tasmanianusLithobius variegatus
Scutigera coleoptrata
Pseudohimantarium mediterraneumClinopodes poseidonisCylindroiulus punctatusPolydesmus coriaceus
Rhipicephalus appendiculatus
Hyalomma lusitanicum
Hyalomma rufipesHyalomma dromedarii
Rhipicephalus sanguineusBoophilus microplus
Rhipicephalus zambeziensis
Rhipicephalus bursa
Boophilus annulatus
Rhipicephalus pusillus
Dermacentor andersoni
Dermacentor marginatus
Amblyomma triguttatum triguttat
Amblyomma vikirri
Aponomma fimbriatum
Aponomma latum
Amblyomma variegatum
Amblyomma tuberculatum
Amblyomma americanum
Amblyomma maculatum
Haemaphysalis inermis
Haemaphysalis punctata
Haemaphysalis leporispalustris
Haemaphysalis humerosa
Haemaphysalis petrogalis
Haemaphysalis leachi
Aponomma undatum
Aponomma concolor
Ixodes auritulusIxodes ricinus
Ixodes affinis
Ixodes pilosus
Ixodes cookei
Ixodes simplex simplex
Ixodes kopsteini
Ixodes holocyclus
Carios puertoricensis
Ornithodoros moubata
Ornithodoros coriaceus
Otobius megnini
Argas lahorensis
Argas persicus
Megisthanus floridanus
Cosmolaelaps trifidus
Hypochthonius rufulus
Lohmannia banksi
Nothrus sylvestris
Xenillus tegeocranus
Euzetes globulosus
Allonothrus russeolus
Archegozetes longisetosus
Trhypochthonius tectorum
Nehypochthonius porosus
Steganacarus magnus
Gehypochthonius urticinus
Chortoglyphus arcuatus
Acarus siro
Eusimonia wunderlichi
Androctonus australis
Liphistius bicoloripes
Eurypelma californica
Odiellus troguloides
Pseudocellus pearsei
Limulus polyphemus
Callipallene gen sp
Berndtia purpurea
Trypetesa lampas
Octolasmis lowei
Paralepas palinuri
Lepas anatifera
Balanus eburneus
Chelonibia patula
Tetraclita stalactifera
Chthamalus fragilis
Verruca spengleri
Ibla cumingi
Calantica villosa
Loxothylacus texanus
Dendrogaster asterinae
Ulophysema oeresundense
Palaemonetes kadiakensis
Helice tridens
Philyra pisum
Callinectes sapidus
Pugettia quadridens
Raninoides louisianensis
Procambarus leonensis
Astacus astacus
Nephrops norvegicus
Panulirus argus
Oedignathus inermis
Penaeus aztecus
Stenopus hispidus
Artemia salina
Branchinecta packardi
Daphnia pulex
Bosmina longirostris
Daphnia galeata
Stenocypris major
Argulus nobilis
Porocephalus crotali
Milnesium tardigradum
Macrobiotus hufelandi
Thulinia stephaniae
Echiniscus viridissimus
Euperipatoides leuckarti
Priapulus caudatus
Pycnophyes kielensis
Helix aspersa
Balea biplicata
Limicolaria kambeul
Laevicaulis alte
Onchidella celtica
Siphonaria algesirae
Anthosiphonaria sirius
Lymnaea glabra
Stagnicola palustris
Lymnaea stagnalis
Radix peregra
Lymnaea auricularia
Fossaria truncatula
Bakerilymnaea cubensis
Biomphalaria glabrata
Littorina obtusata
Littorina littorea
Fasciolaria lignaria
Nassarius singuinjorensis
Pisania striata
Reishia bronni
Thais clavigera
Rapana venosa
Bursa rana
Monodonta labio
Antalis vulgaris
Scutopus ventrolineatus
Arctica islandica
Mercenaria mercenaria
Spisula subtruncata
Mulinia lateralis
Spisula solida
Spisula solidissima
Tresus nuttali
Tresus capax
Mactromeris polynyma
Hippopus hippopus
Hippopus porcellanus
Tridacna squamosa
Tridacna crocea
Tridacna maxima
Tridacna derasa
Tridacna gigas
Vasticardium flavum
Fulvia mutica
Fragum unedo
Fragum fragum
Corculum cardissa
Galeomma takii
Ostrea edulis
Crassostrea virginica
Nerita albicilla
Mytilus edulis
Mytilus trossulus
Mytilus galloprovincialis
Mytilus californianus
Geukensia demissa
Mimachlamys varia
Chlamys hastata
Crassadoma gigantea
Pecten maximus
Argopecten gibbus
Argopecten irradians
Placopecten magellanicus
Chlamys islandica
Atrina pectinata
Arca noae
Barbatia virescens
Acanthopleura japonica
Lepidochitona corrugata
Lepidozona coreanica
Eohemithyris grayii
Platidia anomioides
Stenosarina crosnieri
Gryphus vitreus
Thecidellina blochmanii
Cancellothyris hedleyi
Terebratulina retusa
Liothyrella neozelanica
Liothyrella uva
Gwynia capsula
Calloria inconspicua
Gyrothyris mawsoni
Neothyris parva
Terebratalia transversa
Macandrevia cranium
Fallax neocaledonensis
Laqueus californianus
Megerlia truncata
Terebratella sanguinea
Notosaria nigricans
Hemithyris psittaceae
Neocrania anomala
Neocrania huttoni
Discina striata
Glottidia pyramidata
Lingula lingua
Lingula anatina
Phoronis architecta
Phoronis psammophila
Phoronis vancouverensis
Alboglossiphonia heteroclita
Hirudo medicinalis
Haemopis sanguisuga
Barbronia weberi
Eisenia fetida
Lumbricus rubellus
Dero digitata
Xironogiton victoriensis
Sathodrilus attenuatus
Nereis virens
Aphrodita aculeata
Nereis limbata
Capitella capitata
Harmothoe impar
Sabella pavonina
Magelona mirabilis
Scoloplos armiger
Polydora ciliata
Pygospio elegans
Lanice conchilega
Nephtys hombergii
Glycera americana
Dodecaceria concharum
Chaetopterus variopedatus
Siboglinum fiordicum
Ridgeia piscesae
Ochetostoma erythrogrammon
Pedicellina cernua
Barentsia hildegardae
Barentsia benedeni
Symbion pandora
Plumatella repens
Alcyonidium gelatinosum
Porania pulvillus
Asterias amurensis
Astropecten irregularis
Stomopneustes variolaris
Mespilia globulus
Temnopleurus hardwickii
Salmacis sphaeroides
Tripneustes gratilla
Ophiopholis aculeta
Strongylocentrotus intermedius
Colobocentrotus atratus
Echinus esculentus
Sphaerechinus granularis
Psammechinus miliaris
Diadema setosum
Centrostephanus coronatus
Eucidaris tribuloides
Fellaster zelandiae
Cassidulus mitis
Echinodiscus bisperforatus
Encope aberrans
Echinocardium cordatum
Brissopsis lyrifera
Meoma ventricosa
Arbacia lixula
Asthenosoma owstoni
Psychropotes longicauda
Cucumaria sykion
Lipotrapeza vestiens
Stichopus japonicus
Ophiocanops fugiens
Amphipholis squamata
Strongylocentrotus purpuratus
Ophiomyxa brevirima
Ophioplocus japonicus
Astrobrachion constrictum
Antedon serrata
Endoxocrinus parrae
Eptatretus stouti
Myxine glutinosa atlantic hagfis
Petromyzon marinus
Lampetra aepyptera
Plethodon yonhalossee
Amphiuma tridactylum
Siren intermedia
Ambystoma mexicanum
Eleutherodactylus cuneatus
Hyla cinerea
Bufo valliceps
Nesomantis thomasseti
Gastrophryne carolinensis
Xenopus laevis
Scaphiopus holbrooki
Discoglossus pictus
Grandisonia alternans
Hypogeophis rostratus
Ichthyophis bannanicus
Typhlonectes natans
Homo sapiens
Mus musculus
Rattus norvegicus
Oryctolagus cuniculus
Alligator mississippiensis
Turdus migratorius
Gallus gallus
Heterodon platyrhinos
Sceloporus undulatus
Sphenodon punctatus
Pseudemys scripta
Latimeria chalumnae
Elops hawaiiensis
Megalops atlanticus
Ophichthus rex
Echiophis punctifer
Hiodon alosoides
Albula vulpes
Salmo trutta
Oncorhynchus kisutch
Cyprinus carpio
Ictalurus punctatus
Clupea harengus
Fundulus heteroclitus
Amia calva
Lepisosteus osseus
Polyodon spathula
Sebastolobus altivelis
Rhinobatos lentiginosus
Echinorhinus cookei
Squalus acanthias
Notorynchus cepedianus
Branchiostoma floridae
Halocynthia roretzi
Styela plicata
Herdmania momus
Oikopleura dioica
Doliolum nationalis
Thalia democratica
Pyrosoma atlanticum
Ciona intestinalis
Saccoglossus kowalevskii
Balanoglossus carnosus
Dicyema acuticephalum
Dicyema orientale
Sagitta elegans
Sagitta crassa
Paraspadella gotoi
Phascolosoma granulatum
Prostoma eilhardi
Haplogonaria syltensis
Atriofonta polyvacuola
Actinoposthia beklemischevi
Aphanastoma virescens
Convoluta pulchra
Anaperus tvaerminnensis
Symsagittifera psammophila
Convoluta roscoffensis
Convoluta naikaiensis
Anaperus biaculeatus
Paedomecynostomum bruneum
Postmecynostomum pictum
Childia groenlandica
Philomecynostomum lapillum
Simplicomorpha gigantorhabditis
Paratomella rubra
Dugesia subtentaculata
Dugesia ryukyuensis
Girardia tigrina
Microplana scharfii
Caenoplana caerulea
Australoplana sanguinea
Arthiopostia triangulata
Dugesia japonica
Dugesia iberica
Dugesia mediterranea
Dugesia polychroa
Cura pinguis
Neppia montana
Microplana nana
Bipalium kewense
Platydemus manokwari
Artioposthia triangulata
Dendrocoelopsis lactea
Crenobia alpina
Polycelis nigra
Phagocata ullala
Ectoplana limuli
Bipalium trilineatum
Heronimus m
ollis
Prosorhynchoides gracilescens
Stephanostomum baccatum
Zalophotrema hepaticum
Nasitrema globicephalae
Tetracerasta blepta
Fasciola gigantica
Dicrocoelium dendriticum
Fasciola hepatica
Fasciolopsis buski
Echinostoma caproni
Opisthorchis viverrini
Calicophoron calicophorum
Schistosoma japonicum
Schistosoma m
ansoni
Schistosoma spindale
Schistosoma haem
atobium
Multicotyle purvisi
Lobatostoma m
anteri
Zeuxapta seriolae
Plectanocotyle gurnardi
Diclidophora denticulata
Kuhnia scombri
Bivagina pagrosomi
Neomicrocotyle pacifica
Pseudohexabothrium taeniurae
Neopolystoma spratti
Polystomoides m
alayi
Grillotia erinaceus
Abothrium gadi
Bothriocephalus scorpii
Proteocephalus exiguus
Gyrocotyle urna
Dictyocotyle coeliaca
Calicotyle affinis
Troglocephalus rhinobatidis
Leptocotyle minor
Pseudomurraytrem
a ardens
Gyrodactylus salaris
Udonella caligorum
Encotyllabe chironemi
Bothromesostom
a personatum
Plagiostomum
cinctum
Plagiostomum
striatum
Plicastoma cuticulata
Vorticeros ijimai
Plagiostomum
vittatum
Plagiostomum
ochroleucum
Pseudostomum
klostermanni
Pseudostomum
quadrioculatum
Cylindrostoma fingalianum
Cylindrostoma gracilis
Pseudostomum
gracilis
Ulianinia mollissim
a
Reisingeria hexaoculata
Urastoma cyprinae
Archiloa rivularis
Nemertinoides elongatus
Planocera multitentaculata
Notoplana koreana
Notoplana australis
Discocelis tigrina
Pseudoceros tritriatus
Thysanozoon brocchii
Geocentrophora sphyrocephala
Geocentrophora baltica
Microstom
um lineare
Macrostom
um tuba
Stenostomum
leucops aquariorum
Stenostomum
leucops
Eubostrichus parasitiferus
Eubostrichus topiarius
Eubostrichus dianae
Chromadoropsis vivipara
Desmodora ovigera
Laxus oneistus
Laxus cosmopolitus
Stilbonema m
ajum
Robbea hypermnestra
Acanthopharynx micans
Plectus aquatilis
Plectus acuminatus
Cruznema tripartitum
Rhabditella axei
Pellioditis typica
Rhabditis blum
i
Rhabditis myriophila
Haemonchus placei
Haem
onchus similis
Haemonchus contortus
Nematodirus battus
Ostertagia ostertagi
Nippostrongylus brasiliensis
Syngamus trachea
Heterorhabditis bacteriophora
Caenorhabditis briggsae
Caenorhabditis elegans
Caenorhabditis vulgaris
Pelodera strongyloides
Panagrellus redivivus
Teratorhabditis palmarum
Aduncospiculum halicti
Pristionchus lheritieri
Diplogaster lethieri
Strongyloides stercoralis
Strongyloides ratti
Steinernema carpocapsae
Zeldia punctata
Cephalobus oryzae
Meloidogyne arenaria
Globodera pallida
Aphelenchus avenae
Pseudoterranova decipiens
Terranova caballeroi
Toxocara canis
Contracaecum
multipapillatum
Baylisascaris transfugaAscaris suum
Parascaris equorum
Ascaris lumbricoides
Baylisascaris procyonis
Toxascaris leonina
Porrocaecum depressum
Goezia pelagia
Iheringascaris inquies
Hysterothylacium
pelagicum
Hysterothylacium
fortalezae
Hysterothylacium
reliquens
Heterocheilus tunicatus
Cruzia am
ericana
Brumptaem
ilius justiniBrugia m
alayi
Dirofilaria im
mitis
Gnathostom
a neoprocyonis
Gnathostom
a binucleatum
Gnathostom
a turgidum
Teratocephalus lirellus
Daptonem
a procerus
Diplolaim
elloides meyli
Paracanthonchus caecus
Pontonema vulgare
Enoplus brevis
Enoplus meridionalis
Prismatolaim
us intermedius
Paratrichodorus anemones
Paratrichodorus pachydermus
Trichodorus primitivus
Merm
is nigrescens
Mylonchulus arenicolus
Xiphinema rivesi
Longidorus elongatusTrichuris m
uris
Trichinella spiralisG
ordius aquaticus
Gordius albopunctatus
Chordodes m
organi
Rhopalura ophiocom
ae
Echinorhynchus gadi
Polymorphus altm
ani
Corynosom
a enhydri
Centrorhynchus conspectus
Plagiorhynchus cylindraceus
Pomphorhynchus bulbocoli
Leptorhynchoides thecatus
Neoechinorhynchus crassus
Neoechinorhynchus pseudem
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Macracanthorhynchus ingens
Moliniform
is moliniform
is
Mediorhynchus grandis
Philodina acuticornis
Brachionus plicatilis
Lepidodermella squam
mata
Gnathostom
ula paradoxaTrichoplax adhaerens
Haliplanella lucia
Flosmaris m
utsuensis
Anthopleura kuroganeAnthopleura m
idoriAnem
onia sulcata
Rhizopsam
mia m
inutaE
piactis japonicaTubastraea aurea
Antipathes galapagensis
Antipathes lata
Parazoanthus axinellae
Calicogorgia granulosa
Bellonella rigida
Euplexaura crassa
Alcyonium
gracillimum
Leioptilus fimbriatus
Virgularia gustaviana
Coryne pusilla
Hydra littoralis
Gym
nangium hians
Selaginopsis cornigera
Polypodium hydriform
eTripedalia cystophora
Atolla vanhoeffeni
Craterolophus convolvulus
Mycale fibrexilis
Microciona prolifera
Suberites ficus
Axinella polypoides
Tetilla japonicaE
unapius fragilisS
pongilla lacustrisE
phydatia muelleri
Rhabdocalyptus daw
soniS
cypha ciliataS
ycon calcaravisC
lathrina cerebrumB
eroe cucumis
Mnem
iopsis leidyiTeleaulax am
phioxeiaH
emiselm
is brunnescensH
emiselm
is virescensH
emiselm
is rufescensP
lagiomonas am
ylosaP
roteomonas sulcata
Guillardia theta
Goniom
onas truncataA
canthamoeba lenticulata
Acantham
oeba pustulosa
Acantham
oeba palestinensisA
canthamoeba griffini
Acantham
oeba pearceiA
canthamoeba hatchetti
Acantham
oeba stevensoniA
canthamoeba castellanii
Acantham
oeba lugdunensisA
canthamoeba rhysodes
Acanthamoeba royreba
Acantham
oeba polyphagaA
canthamoeba culbertsoni
Acantham
oeba healyiA
canthamoeba com
andoniA
canthamoeba tubiashi
Acantham
oeba astronyxisC
yanophora paradoxaC
yanoptyche gloeocystisG
laucocystis nostochinearumA
rthrocardia filiculaS
erraticardia macm
illaniiB
ossiella orbignianaC
alliarthron cheilosporioidesC
alliarthron tuberculosumB
ossiella californicaC
orallina officinalisC
orallina elongataJania rubens
Cheilosporum
sagittatumJania crassa
Haliptilon roseum
Metagoniolithon chara
Metagoniolithon stelliferum
Metagoniolithon radiatum
Spongites yendoi
Lithophyllum kotschyanum
Lithothrix aspergillumA
mphiroa fragilissim
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ynarthrophyton patenaM
esophyllum engelhartii
Mesophyllum
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nion tophiforme
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Phym
atolithon laevigatumP
hymatolithon lenorm
andiiLeptophytum
acervatumLeptophytum
feroxM
astophoropsis caniculataC
lathromorphum
compactum
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orphum parcum
Heydrichia w
oelkerlingiiS
porolithon durumR
hodogorgon carriebowensis
Audouinella pectinataAudouinella proskaueri
Audouinella asparagopsisAudouinella tetraspora
Audouinella dasyaeAudouinella endophyticaA
udouinella caespitosaAudouinella rhizoideaA
udouinella daviesiiAudouinella am
phiroaeAudouinella arcuata
Audouinella secundataAudouinella herm
anniiAudouinella tenue
Rhodophysem
a elegansD
evaleraea ramentacea
Meiodiscus spetsbergensis
Palmaria palm
ataH
alosaccion glandiforme
Rhodotham
niella floridulaC
amontagnea oxyclada
Nem
alion helminthoides
Galaxaura m
arginataR
hodochorton purpureumR
hododraparnaldia oregonicaB
atrachospermum
boryanumTuom
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Sirodotia suecica
Sirodotia huillensis
Lemanea fluviatilis
Paralemanea catenata
Batrachosperm
um gelatinosum
Batrachosperm
um helm
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atrachospermum
turfosumP
silosiphon scopariumB
atrachospermum
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um virgato decaisn
Batrachosperm
um louisianae
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Thorea violaceaG
elidium pusillum
Gelidium
latifoliumG
elidium floridanum
Gelidium
sesquipedaleG
elidium serrulatum
Gelidium
americanum
Gelidium
vagumG
riffithsia globuliferaO
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utin
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Dend
roph
thor
a cla
vata
Phor
aden
dron
califo
rnicu
m
Phor
aden
dron
sero
tinum
Dend
roph
thor
a do
ming
ensis
Arce
utho
bium
verti
cillifl
orum
Arce
utho
bium
pen
dens
Arce
utho
bium
oxy
cedr
i
Visc
um a
lbum
Visc
um a
rticu
latu
m
Korth
alse
lla c
ompl
anat
a
Korth
alse
lla lin
dsay
i
Gina
lloa
arno
ttiana
Noto
thixo
s le
ioph
yllus
Noto
thixo
s sub
aure
us
Buck
leya
dist
ichop
hylla
Pyru
laria
pube
ra
Thes
ium im
pedit
um
Com
andr
a um
bella
ta
Geo
caulo
n liv
idum
Eubr
achio
n am
biguu
m
Exoc
arpo
s bi
dwilli
i
Nestr
onia
umbe
llula
Dend
rotro
phe
varia
ns
Dufre
noya
spha
eroc
arpa
Antid
aphn
e vis
coid
ea
Sant
alum
albu
m
Osy
ris la
nceo
lata
Opil
ia am
enta
cea
Cans
jera
lepto
stach
ya
Agon
andr
a m
acro
carp
a
Cham
pere
ia m
anilla
na
Alep
is fla
vida
Lysia
na e
xoca
rpi
Dend
rope
mon
bico
lor
Ory
ctant
hus o
ccide
ntali
s
Tripo
dant
hus a
cutifo
lius
Psitta
cant
hus a
ngus
tifoliu
s
Stru
than
thus
oer
stedii
Gaiad
endr
on p
uncta
tum
Tupe
ia an
tarc
tica
Amye
ma
glabr
um
Dipla
tia fu
rcat
a
Glob
imet
ula d
inklag
ei
Erian
them
um d
rege
i
Helix
anth
era
kirkii
Moq
uiniel
la ru
bra
Tapin
anth
us q
uinqu
angu
lus
Engle
rina
wood
fordio
ides
Agela
nthu
s san
sibar
icus
Deca
isnina
holl
rung
ii
Lora
nthus
euro
paeu
s
Ligar
ia cu
neifo
lia
Phth
irusa
pyr
ifolia
Scho
epfia
are
naria
Scho
epfia
schr
eber
i
Miso
dend
rum
brac
hysta
chyu
m
Scor
odoc
arpu
s bor
neen
sis
Stro
mbo
sia p
hilipp
inens
is
Heiste
ria co
ncinn
a
Xim
enia
amer
icana
Olax a
phyll
a
Minq
uarti
a guia
nens
is
Polyg
ala p
aucif
lora
Punic
a gra
natum
Cercid
iphyll
um ja
ponic
um
Tetra
carp
aea t
asm
anica
Halor
agis
erec
ta
Myr
iophy
llum
exalb
esce
ns
Penth
orum
sedo
ides
Dudley
a vis
cida
Kalan
choe
daigr
emon
tiana
Sedu
m ru
broti
ntum
Crass
ula m
arnie
rana
Sulliv
antia
ore
gana
Saxif
raga
mer
tensia
na
Saxif
raga
integ
rifolia
Chrys
osple
nium
iowen
se
Pelto
boyk
inia
tellim
oides
Heuch
era m
icran
tha
Boyk
inia i
nterm
edia
Itea v
irgini
ca
Pter
ostem
on ro
tundif
olius
Paeo
nia su
ffruti
cosa
Paeo
nia la
ctiflo
ra
Liquid
amba
r styr
aciflu
a
Ribes a
ureu
m
Pedic
ularis
lanc
eolat
a
Pedic
ularis
race
mos
a
Orthoc
arpu
s eria
nthus
Orthoc
arpu
s lute
us
Castill
eja m
iniat
a
Oroba
nche
mult
iflora
Oroba
nche
ludo
vician
a
Oroba
nche
fasc
iculat
a
Lathr
aea c
lande
stina
Harve
ya sp
ecios
a
Hyoba
nche
atrop
urpu
rea
Conop
holis
alpin
a
Conop
holis
amer
icana
Epifag
us vi
rgini
ana
Bosch
niakia
ross
ica
Bourre
ria su
ccule
nta
Ehreti
a cym
osa
Pholis
ma aren
arium
Cuscu
ta gro
novii
Byblis
liniflo
ra
Byblis
giga
ntea
Aesch
ynan
thus r
adica
ns
Chiono
phila
james
ii
Linar
ia vu
lgaris
Ipomoe
a hed
erace
a
Solanu
m tube
rosum
Lyco
persi
con e
scule
ntum
Montin
ia ca
ryoph
yllac
ea
Mitche
lla re
pens
Vahli
a cap
ensis
Helwing
ia jap
onica
Phyllo
noma l
aticu
spis
Panax
japo
nicus
Pana
x quin
quefo
lius
Pana
x gins
eng
Hedera
helix
Hydroc
otyle
sibtho
rpioi
des
Pittosp
orum ja
ponic
um
Ligus
ticum
chua
nxion
g
Cnidium
offic
inale
Lomati
um tri
terna
tium
Angeli
ca ac
utilob
a
Lonic
era m
aack
ii
Symph
orica
rpos a
lbus
Corokia
coton
easte
r
Escall
onia
coqu
imbe
nsis
Eremos
yne p
ectin
ata
Campa
nula
ramulo
sa
Lobe
lia er
inus
Trago
pogo
n dub
ius
Rouss
ea si
mplex
Berzeli
a lan
ugino
sa
Eucom
mia ulm
oides
Aucub
a jap
onica
Garrya
ellip
tica
Manilka
ra za
pota
Impa
tiens
palid
a
Clethra
alnif
olia
Pyrola
picta
Styrax
ameri
cana
Pteros
pora
andro
medea
Sarcod
es sa
nguin
ea
Monotr
opa u
niflor
a
Sarrac
enia
purpu
rea
Cyrilla
race
miflora
Symplo
cos p
anicu
lata
Diospy
ros vi
rginia
na
Camell
ia jap
onica
Fouq
uieria
colum
naris
Nyssa
sylva
tica
Philad
elphu
s lew
isii
Hydran
gea m
acrop
hylla
Nyssa
ogec
he
Campto
theca
acum
inata
Cornus
florid
a
Cornus
race
mosa
Cornus
offic
inalis
Tetra
centr
on sin
ense
Troch
oden
dron a
ralioid
es
Buxus
sempe
rviren
s
Sabia
swinh
oei
Nelumbo
lutea
Platan
us oc
ciden
talis
Dicentr
a exim
ia
Hypec
oum im
berba
Argemon
e mexi
cana
Staunto
nia he
xaph
ylla
Holboe
llia la
tifolia
Akebia
quina
ta
Lardi
zaba
la biter
nata
Boquila
trifoli
ata
Decais
nea f
arges
ii
Sinofra
nche
tia ch
inens
is
Sargen
todoxa
cune
ata
Euptele
a poly
andra
Tinospo
ra caf
fra
Menisp
ermum
cana
densi
s
Ranun
culus
taisa
nens
is
Ranun
culus
sardo
us
Xanthorhiza sim
plicissi
ma
Coptis trif
olia
Glaucid
ium pa
lmatum
Hydras
tis ca
nade
nsis
Caulop
hyllum
thalic
troide
s
Podop
hyllum
peltat
um
Nandin
a dom
estica
Knightia exce
lsa
Placosp
ermum
coria
ceum
Ceratop
hyllum
demers
um
Sassafra
s albidum
Calycanthus fl
oridus
Hedyos
mum ar
bores
cens
Drimys
winteri
Drimys
aromatica
Magnolia
acum
inata
Saruma h
enryi
Asarum
hayat
anum
Asarum
canad
ense
Aristolochia tomentosa
Lactor
is fern
andezi
ana
Saururu
s cern
uus
Saururus chinensis
Chloranthus spica
tus
Houttuynia cordata
Peperomia serpens
Piper kadsura
Prosopanche americana
Hydnora africana
Cytinus ru
ber
Ombrophy
tum su
bterran
eum
Scybalium jamaice
nse
Helosis ca
yennensis
Corynaea cra
ssa
Rafflesia
keithii
Rhizanthes z
ipellii
Balanophora fungosa
Langsdorffia hy
pogaea
Cynomorium cocci
neum
Pinus wallic
hiana
Pinus luchuensis
Pinus ellio
ttii
Picea mariana
Abies lasio
carpa
Larix leptolepis
Lagarostrobos fr
anklinii
Parasitaxis
ustus
Prumnopitys taxifo
lia
Phyllocla
dus hypophyllu
s
Phyllocla
dus trich
omonoides
Podocarpus costa
lis
Podocarpus elatus
Nageia nagi
Nageia falcatus
Saxegothaea conspicu
a
Microcachrys
tetragona
Microstro
bos fitzgeraldii
Podocarpus totara
Dacrycarpus d
acrydioides
Dacrycarpus im
bricatus
Dacrydium cu
pressinum
Agathis robusta
Araucaria columnaris
Araucaria heterophylla
Araucaria cunninghamii
Araucaria excelsa
Agathis borneensis
Taiwania cryptomerioides
Juniperus chinensis
Cupressus m
acrocarpa
Calocedrus formosana
Calocedrus decurrens
Metasequoia glyptostroboides
Cryptomeria japonica
Cephalotaxus wilso
niana
Torreya nucifera
Amentotaxus formosana
Taxus mairei
Sciadopitys vertic
illata
Ephedra sinica
Ephedra californica
Ephedra saxatilis
Ephedra antisyphilitica
Gnetum urens
Gnetum leyboldii
Gnetum nodiflorum
Gnetum africanum
Welwitschia mirabilis
Zamia pumila
Cycas taitungensis
Ginkgo biloba
Botrychium lunaria
Blechnum occidentale
Hypolepis muelleri
Paesia scaberula
Histiopteris incisa
Pteridium aquilinum
Dicksonia antarctica
Lonchitis hirsuta
Odontosoria chinensis
Dicranopteris linearis
Vandenboschia davallioides
Adiantum raddianum
Lygodium japonicum
Asplenium nidus
Osmunda cinnamomea
Angiopteris lygodiifolia
Ophioglossum petiolatum
Psilotum nudum
Tmesipteris tannensis
Equisetum robustum
Equisetum hyemale
Salvinia natans
Lycopodiella inundata
Lycopodium tristachyum
Huperzia lucidula
Huperzia taxifolia
Lycopodium phlegmaria
Selaginella vogelii
Selaginella umbrosa
Isoetes engelmannii
Isoetes durieui
Sphagnum cuspidatum
Sphagnum palustre
Ricciocarpos natans
Riccia fluitans
Plagiochasma rupestre
Conocephalum conicum
Reboulia hemisphaerica
Preissia quadrata
Bucegia romanica
Marchantia polymorpha
Riella helicophylla
Sphaerocarpos donnelli
Sphaerocarpus texanus
Aulacomnium androgynum
Aulacomnium turgidum
Eurhynchium hians
Blindia acuta
Wardia hygrometrica
Ulota phyllantha
Orthotrichum stramineum
Tortula ruralis
Pottia truncata
Fissidens taxifolius
Dicranum scoparium
Ptychomitrium gardneri
Plagiomnium affine
Cyrtomnium hymenophyllum
Mnium hornum
Cinclidium stygium
Pohlia cruda
Mielichhoferia bryoides
Mielichhoferia elongata
Pohlia bolanderi
Leptostomum macrocarpum
Meesia uliginosa
Leptobryum pyriforme
Tetraplodon mnioides
Splachnum luteum
Tayloria lingulata
Brachymenium pulchrum
Rhodobryum giganteum
Bryum donianum
Bryum alpinum
Bryum caespiticium
Anomobryum julaceum
Bryum argenteum
Encalypta rhapdocarpa
Bryobrittonia longipes
Scouleria aquatica
Fontinalis antipyretica
Orthodontium lineare
Bartramia stricta
Hedwigia ciliata
Rhacocarpus purpurascens
Philonotis fontana
Bartramia pomiformis
Pyrrhobryum vallis gratiae
Plagiothecium undulatum
Brachythecium rutabulum
Calliergonella cuspidata
Hypnum cupressiforme
Hylocomium splendens
Rhytidiadelphus squarrosus
Physcomitrium pyriforme
Funaria hygrometrica
Physcomitrella patens
Timmia sibirica
Jamesoniella autumnalis
Jungermannia leiantha
Calypogeia arguta
Polytrichum commune
Atrichum angustatum
Polytrichum formosum
Atrichum undulatum
Tetraphis pellucida
Andreaea rupestris
Takakia lepidozioides
Andreaea rothii
Anthoceros agrestis
Anthoceros laevis
Pellia epiphylla
Scapania nemorea
Symphyogyna brongartii
Plagiochila adiantoides
Trichocolea tomentella
Lophocolea heterophylla
Fossombronia pusilla
Fossombronia brasiliensis
Metzgeria furcata
Haplomitrium hookeri
Riccardia pinguis
Chara hornemannii
Chara curtissii
Chara hispida
Chara foetida
Chara vulgaris
Chara connivens
Chara muelleri
Chara australis
Lamprothamnium macropogon
Lamprothamnium papulosum
Lychnothamnus barbatus
Nitellopsis obtusa
Chara preissii
Nitella axillaris
Tolypella porteri
Nitella flexilis
Coleochaete scutata
Coleochaete orbicularis
Klebsormidium flaccidum
Chlorokybus atmophyticus
Raphidonema longiseta
Bracteacoccus aerius
Bracteacoccus grandis
Bracteacoccus medionucleatus
Bracteacoccus minor
Bracteacoccus giganteus
Chlorella zofingiensis
Ankistrodesmus stipitatus
Scenedesmus ovalternus
Scenedesmus producto capitatus
Scenedesmus obliquus
Scenedesmus rubescens
Scenedesmus vacuolatus
Scotiellopsis oocystiformis
Scotiellopsis terrestris
Coelastrella multistriata
Scenedesmus pupukensis
Scenedesmus costato granulatus
Scenedesmus abundans
Scenedesmus communis
Neochloris aquatica
Neochloris vigenis
Characium hindakii
Hydrodictyon reticulatum
Pediastrum duplex
Tetracystis aeriaChlorococcum echinozygotum
Chlorococcum hypnosporum
Chlamydomonas moewusii
Chlamydomonas pitschmannii
Chlamydomonas noctigama
Carteria radiosa
Carteria crucifera
Polytoma oviforme
Chlamydomonas monadina
Chlamydomonas fimbriata
Chlamydomonas rapa
Chlamydomonas asymmetrica
Hormotila blennistaGloeococcus maximus
Chlamydomonas baca
Chlamydomonas zebra
Chloromonas oogama
Chlamydomonas debaryana
Chlamydomonas reinhardtii
Volvox carteriPaulschulzia pseudovolvox
Polytomella parvaHafniomonas reticulata
Chloromonas serbinowi
Chlamydomonas nivalis
Chloromonas rosaeChloromonas clathrataChlamydomonas macrostellata
Chlamydomonas mutabilis
Chlamydomonas bipapillata
Chlamydomonas radiataChlorococcopsis minutaBotryococcus brauniiAscochloris multinucleata
Protosiphon botryoidesSpongiochloris spongiosaGongrosira papuasicaCharacium saccatumCharacium vacuolatumChloromonas perforataChlorococcum oleofaciensPleurastrum insigneHaematococcus zimbabwiensisPolytoma ellipticumPolytoma anomalePolytoma mirumPolytoma obtusumPolytoma uvellaPolytoma difficileChlamydomonas pulsatillaChlamydomonas humicolaChlamydomonas dysosmosDunaliella parvaDunaliella salinaAsteromonas gracilisSpermatozopsis similisMuriella auranticaChaetophora incrassataStigeoclonium helveticumFritschiella tuberosaHormotilopsis tetravacuolarisPlanophila terrestrisHormotilopsis gelatinosaChaetopeltis orbicularisOedogonium cardiacumOedocladium carolinianumOedogonium angustistomumBulbochaete hiloensisPleurastrum paucicellulareParietochloris pseudoalveolarisCharacium perforatumPleurastrum erumpensPleurastrum terrestreChlorella sorokinianaChlorella lobophoraChlorella vulgarisMuriella terrestrisChlorella kessleriChlorella minutissimaNanochlorum eucaryotumPrototheca wickerhamiiChlorella protothecoidesPrototheca zopfiiChlorella ellipsoideaChlorella mirabilisStichococcus bacillarisChoricystis minorChlorella saccharophilaChlorella luteoviridisDictyochloropsis reticulataTrebouxia jamesiiTrebouxia arboricolaTrebouxia asymmetricaTrebouxia usneaeTrebouxia impressaMyrmecia biatorellaeFriedmannia israeliensisMyrmecia astigmaticaTrebouxia magnaChlorella homosphaeraMicrothamnion kuetzingianumLeptosira obovataSiphonocladus tropicusErnodesmis verticillataCladophora proliferaCladophora coelothrixMicrodictyon boergeseniiCladophora liebetruthiiCladophora catenataCladophora socialisValonia utricularisChamaedoris peniculumCladophoropsis membranaceaCladophora pellucidaCladophoropsis zollingeriiCladophora pellucidoideaCladophora vagabundaCladophora sericeaCladophora albidaCladophora rupestrisAcetabularia dentataAcetabularia majorAcetabularia acetabulumAcicularia schenkiiPolyphysa peniculusPolyphysa parvulaNeomeris dumentosaCymopolia van bosseaeChlorocladus australasicus
Batophora occidentalisBatophora oerstediiBornetella nitidaPseudoneochloris marinaGloeotilopsis planctonicaProtoderma sarcinoideaPseudendoclonium basilienseUlothrix zonataMyrmecia bisectaTetraselmis convolutae
Tetraselmis striataScherffelia dubiaOltmannsiellopsis viridisPseudoscourfieldia marinaNephroselmis olivacea SteinMantoniella squamataCoccoid green algaAchlya bisexualisLagenidium giganteumPhytophthora megasperma
Developayella elegansHyphochytrium catenoidesCymatosira belgicaPapiliocellulus elegans
Thalassiosira eccentricaThalassiosira rotulaSkeletonema costatumSkeletonema pseudocostatumLauderia borealisPorosira glacialisChaetoceros didymus
Chaetoceros rostratusEucampia antarcticaOdontella sinensisDitylum brightwelliStreptotheca thamesisLithodesmium undulatumPseudo nitzschia pungensPseudo nitzschia multiseries
Bacillaria paxilliferNitzschia apiculataCylindrotheca closteriumAsterionellopsis glaciliaRhaphoneis belgicaeThalassionema nitzschioides
Fragilaria striatulaActinocyclus curvatulus
Coscinodiscus radiatusCorethron criophilumRhizosolenia setigeraMelosira variansAulacoseira ambiguaAulacoseira distansStephanopyxis broschiiGiraudyopsis stelliferaSaccorhiza polyschides
Desmarestia ligulataChorda tomentosaSporochnus comosusCostaria costataHizikia fusiformisMyagropsis myagroides
Sargassum macrocarpum
Sargassum confusum
Sargassum horneriCoccophora langsdorfii
Cystoseira hakodatensis
Fucus distichusFucus gardneriPelvetia babingtoniiEctocarpus siliculosus
Scytosiphon lomentaria
Botrydium stoloniferum
Tribonema aequaleHeterothrix debilisBotrydiopsis intercedens
Vaucheria bursataVacuolaria virescens
Heterosigma akashiwo
Chattonella subsalsa
Sarcinochrysis marina
Aureomonas lagunensis
Coccoid pelagophyte
Pelagomonas calceolata
Pelagococcus subviridis
Aureococcus anophagefferens
Coccoid stramenopile
Tessellaria volvocina
Mallomonas rasilis
Mallomonas papillosa
Synura petersenii
Synura glabraSynura sphagnicola
Synura spinosaSynura mammillosa
Mallomonas caudata
Mallomonas matvienkoae
Mallomonas akrokomos
Synura uvellaMallomonas annulata
Mallomonas striata
Mallomonas adamas
Mallomonas splendens
Chrysonephele palustris
Ochromonas danica
Paraphysomonas vestita
Oikomonas mutabilis
Hibberdia magnaChromulina chromophila
Paraphysomonas foraminifera
Nannochloropsis granulata
Nannochloropsis oculata
Nannochloropsis salina
Apedinella radians
Pteridomonas danica
Pseudopedinella elastica
Rhizochromulina cf marina
Ciliophrys infusionum
Dictyocha speculum
Thraustochytrium kinnei
Labyrinthuloides haliotidis
Ulkenia profunda
Labyrinthuloides minuta
Syluania monomastiga
Cafeteria roenbergensis
Blastocystis hominis
Proteromonas lacertae
Loxodes magnus
Loxodes striatus
Blepharisma americanum
Eufolliculina uhligi
Climacostomum virens
Spirostomum ambiguum
Tetrahymena nanneyi
Tetrahymena hyperangularis
Tetrahymena pigmentosa
Tetrahymena patula
Tetrahymena capricornis
Tetrahymena hegewischi
Tetrahymena australis
Tetrahymena thermophila
Tetrahymena malaccensis
Tetrahymena borealis
Tetrahymena canadensis
Tetrahymena pyriformis
Tetrahymena tropicalis
Tetrahymena corlissi
Tetrahymena empidokyrea
Glaucoma chattoni
Colpidium campylum
Ophryoglena catenula
Ichthyophthirius multifiliis
Opisthonecta henneguyi
Vorticella microstoma
Vorticella convallaria
Paramecium tetraurelia
Uronema marinum
Cohnilembus verminus
Pseudocohnilembus marinus
Anophyroides haemophila
Cyclidium plouneouri
Cyclidium glaucoma
Cyclidium porcatum
Plagiopyla nasuta
Plagiopyla frontata
Trimyema compressum
Prorodon teres
Oxytricha granulifera
Onychodromus quadricornutus
Oxytricha nova
Stylonychia pustulata
Metopus palaeformis
Nyctotherus cordiformis
Nyctotherus ovalis
Nyctotherus velox
Metopus contortus
Euplotes aediculatus
Diplodinium dentatum
Polyplastron multivesiculatum
Eudiplodinium maggii
Epidinium caudatum
Ophryoscolex purkynjei
Entodinium caudatum
Dasytricha ruminantium
Isotricha intestinalis
Didinium nasutum
Homalozoon vermiculare
Loxophyllum utriculariae
Bursaria truncatella
Colpoda inflata
Obertrumia georgiana
Furgasonia blochmanni
Pseudomicrothorax dubius
Trithigmostoma steini
Discophrya collini
Uronema acuminata
Minchinia teredinis
Haplosporidium costale
Haplosporidium nelsoni
Haplosporidium louisiana
Urosporidium crescens
Babesia bovis
Babesia bigemina
Babesia caballi
Babesia divergens
Babesia odocoilei
Babesia canis
Theileria parva
Theileria annulata
Theileria taurotragi
Theileria velifera
Theileria buffeli
Theileria sergenti
Theileria cervi
Theileria mutans
Cytauxzoon felis
Babesia equi
Babesia rodhaini
Babesia microti
Sarcocystis tenella
Sarcocystis arieticanis
Sarcocystis cruzi
Sarcocystis gigantea
Sarcocystis hirsuta
Sarcocystis buffalonis
Sarcocystis fusiformis
Sarcocystis hominis
Sarcocystis aucheniae
Toxoplasma gondii
Neospora caninum
Isospora ohioensis
Isospora suis
Isospora belli
Sarcocystis muris
Frenkelia glareoli
Frenkelia microti
Sarcocystis neurona
Eimeria tenella
Eimeria necatrix
Eimeria acervulina
Eimeria praecox
Eimeria mitis
Eimeria brunetti
Eimeria nieschulzi
Eimeria bovis
Plasmodium berghei
Plasmodium vivax
Plasmodium fragile
Plasmodium inui
Plasmodium knowlesi
Plasmodium cynomolgi
Plasmodium simium
Plasmodium malariae
Plasmodium falciparum
Plasmodium reichenowi
Plasmodium floridense
Plasmodium mexicanum
Plasmodium gallinaceum
Plasmodium lophurae
Plasmodium ovale
Cryptosporidium parvum
Cryptosporidium wrairi
Cryptosporidium baileyi
Cryptosporidium muris
Cryptosporidium serpentis
Prorocentrum emarginatum
Prorocentrum arenarium
Prorocentrum lima
Prorocentrum maculosum
Prorocentrum concavum
Alexandrium tamarense
Alexandrium fundyense
Alexandrium minutum
Alexandrium ostenfeldii
Alexandrium margalefeii
Pyrocystis noctiluca
Fragilidium subglobosum
Ceratocorys horrida
Ceratium tenue
Ceratium fusus
Amphidinium belauense
Gonyaulax spinifera
Crypthecodinium cohnii
Gymnodinium beii
Gymnodinium simplex
Symbiodinium corculorum
Symbiodinium meandrinae
Symbiodinium pilosum
Symbiodinium microadriaticum
Gloeodinium viscum
Prorocentrum panamensis
Gymnodinium fuscum
Lepidodinium viride
Gymnodinium catenatum
Gyrodinium impudicum
Cachonina hallii
Heterocapsa triquetra
Gymnodinium sanguineum
Scrippsiella nutricula
Prorocentrum micans
Prorocentrum mexicanum
Prorocentrum minimum
Pentapharsodinium tyrrhenicum
Gymnodinium mikimotoi
Cryptoperidonopis brodyi
Pfiesteria piscicida
Amyloodinium ocellatum
Noctiluca scintillans
Perkinsus marinus
Gymnochlora stellata
Lotharella vacuolata
Chlorarachnion CCMP242
Rhinomonas pauca
Storeatula major
Rhodomonas abbreviata
Rhodomonas salina
Rhodomonas mariana
Cryptomonas CCMP325
Geminigera cryophila
Komma caudata
Chilomonas paramecium
Ammonia beccarii
Sorites orbiculus
Entamoeba dispar
Entamoeba histolytica
Entamoeba gingivalis
Lotharella globosa
Chlorarachnion reptans
Pedinomonas minutissima
Unnamed chlorarachniophyte CCMP
Unnamed chlorarachniophyte
Dictyostelium discoideum
Physarum polycephalum
Trypanosoma boissoni
Trypanosoma triglae
Trypanosoma rotatorium
Trypanosoma therezieni
Trypanosoma mega
Trypanosoma scelopori
Trypanosoma varani
Trypanosoma avium
Trypanosoma bennetti
Trypanosoma theileri
Trypanosoma grayi
Trypanosoma musculi
Trypanosoma lewisi
Trypanosoma m
icroti
Trypanosoma cruzi
Trypanosoma rangeli
Trypanosoma vespertilionis
Trypanosoma pestanai
Trypanosoma congolense
Trypanosoma sim
iae
Trypanosoma evansi
Trypanosoma equiperdum
Trypanosoma brucei
Blastocrithidia culicis
Crithidia oncopelti
Herpetomonas roitm
ani
Phytomonas serpens
Herpetomonas m
ariadeanei
Leishmania guyanensis
Leishmania tarentolae
Endotrypanum m
onterogeii
Leishmania m
ajor
Leishmania am
azonensis
Leishmania donovani
Crithidia fasciculata
Herpetomonas m
uscarum
Herpetomonas m
egaseliae
Herpetomonas sam
uelpessoai
Bodo caudatus
Trypanoplasma borreli
Rhynchobodo U67183
Dimastigella trypaniform
is
Petalomonas cantuscygni
Peranema trichophorum
Khawkinea quartana
Lepocinclis ovum
Lepocinclis ovata
Euglena gracilis
Hexamita inflata
Trepomonas agilis
Spironucleus muris
Giardia ardeae
Giardia m
icroti
Giardia intestinalis
Giardia duodenalis
Giardia lam
blia
Giardia m
uris
Nosema necatrix
Vairimorpha necatrix
Nosema oulem
ae
Nosema vespula
Nosema ceranae
Nosema apis
Nosema trichoplusiae
Nosema bom
bycis
Nosema furnacalis
Encephalitozoon hellem
Encephalitozoon cuniculi
Septata intestinalis
Enterocytozoon bieneusi
Enterocytozoon salmonis
Vittaforma corneae
Endoreticulatus schubergi
Ameson m
ichaelis
Glugea anom
ala
Glugea stephani
Glugea atherinae
Pleistophora anguillarum
Vavraia oncoperae
Spraguea lophii
Glugea am
ericanus
Visvesvaria acridophagus
Visvesvaria algerae
Culicosporella lunata
Amblyospora stim
uli
Edhazardia aedis
Amblyospora californica
Parathelohania anophelis
Antonospora scoticae
Protists
ArchaeaBacteria
You are here
Animals
Fungi
Plants
your Introduction
• My name is ................,
• I am Bachelor/Master/Ph.D student in 1st/2nd/ Year.
• why are you here ?
• what are your expectations and what you want to learn
Course formatTitle Bioinformatics
Code MTAT.03.239
Language English
Lecturer Balaji, others from BIIT
Lectures Thursday 12:15-14:00
Practicals Thursday 14:15-16:00
PlaceJ. Liivi 2 - 512, Department of Computer Science
11 Lectures 22h
10 Practicals 20h
10 Home work 30h
Personal preparation 20h
Project 50h
Exam preparation & Exam 18h
Total 160 Hours
Course format
Course outline• Course page : http://courses.cs.ut.ee/2014/bi/
• Course dates : 04th Sep. 2014 to 31 Jan 2015
• Christmas holidays
• Grades 6 ECTS = 100 points
• 10 - quiz
• 30 - Home assignment
• 35 - Project (deadline 25th January 2015)
• 25 - Exam (Date December or January 2015, Time 12:15)
Simple rules
• Attending lectures, practice sessions, exercises are compulsory
• Actively participate in discussions
• Expect quiz and questions
• Any problems, complaints or questions mail me
Course format
• We will follow https://www.coursera.org/course/bioinformatics and the course text book http://bioinformaticsalgorithms.com/
• There will be 10 theory lectures, correspond to 10 practice
• Home works will be in http://rosalind.info.
• Be prepared there will be quiz in each lecture.
Aim of the course
• To introduce the concepts and principles of bioinformatics, starting from biological problem to algorithmic methods
• What do you learn from this course?
• Understand the concept of Integrative analysis involving Biology, Statistics, Mathematics and computer science
• Data management and Data analysis
• Ideas to develop and understand biological, statistical, computational problems and apply your algorithmic or analysis skills to solve a biological problem
Requirement for this course
BioInformatics
• Vast amount of information being generated - especially DNA sequencing
• species, many humans (medical)
• critical part - computational analysis of the data
• computational analysis is the bottle neck
• great demand for individuals with bioinformatics knowledge
BioInformatics
• background in mathematics, cs, .. “any discipline”… should understand biological problem in your own perspective
• year 2000, Human genome announced
• what changed after human genome?
• Biology - Evolution
• Current scenario - big data, integrative analysis, different experimental data, complex studies, to improve human health or for better yielding crops
What does bioinformatics mean for you?
Home work ?
• Write an essay or your point of view on the topics below.
• Question : What is the field of Bioinformatics interesting for you. What are the greatest achievements in this field in the past two decades (list maximum of five). Describe briefly the current existing challenges (maximum of three) and suggest some ways to solve at least one problem.
• Write 2-3 pages report. Read and interpret. Don't copy the text from web or from your friends.
• Peer-reviewed by your course mates.