introducing vespir: a new open-source software to investigate ct ventilation imaging in lung cancer...
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SYDNEY MEDICAL SCHOOL
SYDNEY MEDICAL SCHOOL
J. Kipritidis, H. C. Woodruff & P. J. Keall
Radiation Physics Laboratory
UNIVERSITY OF SYDNEY
Introducing VESPIRA new open-source effort to investigate CTVI in lung cancer radiotherapy
Innovations in Cancer Treatment and Care ConferenceOctober 15th 2015
› Radiation pneumonitis is a major dose-limiting toxicity for lung cancer radiotherapy, symptomatic in up to 30% of patients* and fatal in up to 2%.
D.A. Palma et al. 2013. IJROBP 85 pp. 444-50
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What is the clinical driver for CT ventilation imaging (CTVI)?
Galligas PET
› New clinical trials are testing whether functionally-adaptive treatments can improve outcomes by sparing ventilated / perfused lung.
D. A. Hoover et al. 2014. BMC Cancer 14:934
Technegas SPECT
› Unfortunately, “gold standard” ventilation imaging is only performed for a few % of patients.
› CTVI visualizes air volume changes in 4DCT by quantifying breathing-induced lung motion using deformable image registration (DIR).
T. Guerrero et al. 2006. PMB 51 pp. 777-791
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high
low
Ventilation
Compared to nuclear medicine imaging: 4DCT has high accessibility No added scan time/dose for lung cancer patientsx No freeware tools for CTVI; difficult to implement from scratch!
① Import 4DCT ② Perform DIR ③ Quantify volume or density changes
What is the clinical driver for CT ventilation imaging (CTVI)?
Data from Nepean Hospital(Penrith, NSW Australia)
› Ventilation via Scripted Pulmonary Image Registration (VESPIR)
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① vp = VESPIR_2();
VESPIR: The first open-source toolkit for CTVI
② vp.convertDCMAll();③ vp.loadVolumesAll();④ vp.segmentLungs();
⑥ vp.performDIR();⑦ vp.Jdet2Vmap();⑧ vp.Vmap2Dicom();
⑤ vp.getLungVolumes();
› We can evaluate the inhale exhale DIR in a freeware viewer (e.g. 3D Slicer):
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Before registration (Anatomic mismatch!)
After registration (Good match in lungs)
VESPIR: The first open-source toolkit for CTVI
› We can compare CTVI’s based on different published analysis methods:
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Lung volume change (“Jacobian-based”)
Lung density change (“HU-based”)
VESPIR: The first open-source toolkit for CTVI
› And understand the impact of different computational parameters
Similarity metric?
DIR engine?
B-spline grid spacing?
DIR regularization?
Gaussian filtering?
Apply DIR lung mask?
Apply temporal filtering to 4D motion?
λ = 0.001 λ = 0.1 λ = 1
λ = 5 λ = 10
high
low
4D-CBCT
J. Kipritidis et al. 2015. Med Phys 42 (3) pp. 1255-67
VESPIR enables cross-modality validation of CTVI across different clinical settings.
VESPIR: The first open-source toolkit for CTVI
Ventilation
Import 68Ga 4D-PET/CT
Compute CTVI
For each of 25 patients imaged at up to three timepoints:
VESPIR “Ground truth”
3D Galligas PET
HYPOTHESIS: CTVI should compare well against Galligas PET in terms of voxel-wise Spearman correlations.
High
LowVentilation
Post-processing1.Smoothing2.Normalization
Emphysema (Bullae)
Tumor obstruction
Clipped artery
Galligas PETQuantitative (voxel-wise correlation):
r = 0.50 ± 0.17 Range: (0.11 – 0.80)
Galligas PET
CTVI
CTV
I
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20
10
0
# Lung voxels
Using VESPIR to validate CTVI
Qualitative (visual comparison):
› VESPIR has produced the highest voxel-wise correlations with nuclear medicine so far.
Quantitative (lobar-based correlation):
Using VESPIR to validate CTVI
Qualitative (visual comparison):
› VESPIR has also been used to compare CTVI and 68Ga-PET for surgical applications
r = 0.96 (p<0.01)
(11 patients, ~50 lobes)
E. Eslick et al.Eur. J. of Cardio-Thorac. (2015)
Modalities 4D-CT 4D-CBCT 99mTc SPECT 68Ga PET
4D-CT VCUPMCC VCU NCCC
PMCC
RNSH
BH-CT RNSH RNSH
4D-CBCT VCU NCCC
• NCCC = Nepean Cancer Care Centre (Prospective)• RNSH = Royal North Shore Hospital (Prospective)• PMCC = Peter MacCallum Cancer Centre (Retrospective)• VCU = Virginia Commonwealth University (Retrospective)
We are using VESPIR to validate CTVI across multiple modalities:
LEGEND Published Under-way
Where is VESPIR being used?
› You can explore CT ventilation imaging at your clinic! All you need is:- All you need is a Windows laptop running MATLAB 2014 or newer*
- An installation of Plastimatch, the freeware DIR software from: http://plastimatch.org
› To obtain a copy of VESPIR, send me an email (or say hello!)
› You can find out more about CT ventilation imaging here:http://sydney.edu.au/medicine/radiation-physics/research-projects/CT-ventilation-imaging.php
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What do I need to run VESPIR? (and how can I get it?)
*A standalone is version coming soon!
Acknowledgements
DisclosureThis work was supported by a Cancer Institute NSW Early Career Fellowship, Cancer Australia Priority-driven Collaborative Cancer Research Grant APP1060919 and an NHMRC Australia Fellowship.