hpc at hcc jun wang outline of workshop2 familiar with linux file system familiar with shell...
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HPC at HCC Jun Wang Familiar with BASH Shell environmentTRANSCRIPT
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HPC at HCCJun Wang
hcc.unl.edu
Outline of Workshop2
Familiar with Linux file system
Familiar with Shell environment
Familiar with module command
Familiar with queuing system
How to submit a serial job
How to submit a MPI parallel job
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HPC at HCCJun Wang
hcc.unl.edu
Familiar with Linux file systemBasic File System Structure Basic File System Partitions
On tusker and sandhills:$HOME (/home) is read-only on computing nodes, 10 GB space/group, daily backup$WORK (/work) is writable on all nodes, 50 TB space/group, no backup
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HPC at HCCJun Wang
hcc.unl.edu
Familiar with BASH Shell environment
![Page 4: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/4.jpg)
HPC at HCCJun Wang
hcc.unl.edu
Familiar with module command
![Page 5: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/5.jpg)
HPC at HCCJun Wang
hcc.unl.edu
Familiar with module command
![Page 6: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/6.jpg)
HPC at HCCJun Wang
hcc.unl.edu
Familiar with queuing system-PBS
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HPC at HCCJun Wang
hcc.unl.edu
Familiar with queuing system-SLURM
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HPC at HCCJun Wang
hcc.unl.edu
How to submit a serial job
![Page 9: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/9.jpg)
HPC at HCCJun Wang
hcc.unl.edu
How to submit a serial job
![Page 10: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/10.jpg)
HPC at HCCJun Wang
hcc.unl.edu
How to submit a MPI parallel job
![Page 11: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/11.jpg)
HPC at HCCJun Wang
hcc.unl.edu
How to submit a MPI parallel job
![Page 12: HPC at HCC Jun Wang Outline of Workshop2 Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing](https://reader036.vdocuments.site/reader036/viewer/2022062311/5a4d1b1a7f8b9ab059992fa9/html5/thumbnails/12.jpg)
HPC at HCCJun Wang
hcc.unl.edu
More useful SLURM commands“sinfo” : Check available partitions and their status
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HPC at HCCJun Wang
hcc.unl.edu
More useful SLURM commands“scontrol show job YourJobID”: Check details of a specific job
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HPC at HCCJun Wang
hcc.unl.edu
How to run Gaussian09How to compile and run GAMESS
How to compile and run GROMACS
Thank You!
To be continued: