how to use geo
DESCRIPTION
How to use GEO. Ka-Lok Ng Department of Bioinformatics Asia University Taiwan. GEO datasets. Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo. GSE8351. GSE, GPL, GSM. GPL. GSM. GPL5452 – view full table. 67 samples - mainly HCC samples. - PowerPoint PPT PresentationTRANSCRIPT
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How to use GEO
Ka-Lok NgDepartment of BioinformaticsAsia UniversityTaiwan
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GEO datasets Go to http://www.ncbi.nlm.nih.gov/ Select ‘GEO datasets’ Keyword : Hepatoma cell lines, homo
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GSE8351
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GSE, GPL, GSM
GSM
GPL
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GPL5452 – view full table
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67 samples - mainly HCC samples
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G000002 0.065540587 G000003 0.053925988 G000004 0.031904168
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Search GEO datasets for “GSE3536”
Title : Hepatoma cell lines vs. Universal control 3
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GSE3536
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GPL2913 – view full table
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36 samples
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GEO Profiles - http://www.ncbi.nlm.nih.gov/
Step1:選擇 GEO Profiles
Step2:在此鍵入你所想收尋之關鍵字如 :
GATA6 (gene name ) AND "Homo Sapiens" [ORGN] AND GDS596 (Accession )
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Search result
可點進去看 tissue分佈
查詢後,有些得出許多結果,依user 所要的資料去選擇,用基因所對應的 NM編號來選。