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    Higher Categories and Taxa

    University of the Punjab

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    Zainab Saeed

    Z08-13

    7thsemester

    Bsc (Hons.) Zoology

    University of Punjab

    Submitted To:

    Mrs Dr. Abida Butt

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    Table of Contents

    Higher Categories and Higher Taxa......................................................................................................... 4

    The Genus: .......................................................................................................................................... 4

    Generic Characters: ......................................................................................................................... 5

    Meaning of a genus: ........................................................................................................................ 5

    The Family: .......................................................................................................................................... 6

    Orders, Classes and Phyla: .................................................................................................................. 6

    The Process of Ranking ........................................................................................................................... 7

    Relationship and Similarity ..................................................................................................................... 7

    Homology: ........................................................................................................................................... 8

    Serial Homology: ............................................................................................................................. 9

    Analogy: .......................................................................................................................................... 9

    Homoplasy: ..................................................................................................................................... 9

    Convergence in characters:................................................................................................................. 9

    Parallel Characters: ....................................................................................................................... 10

    Reversed characters: ..................................................................................................................... 11

    Difficulties Encountered in Macrotaxonomy ........................................................................................ 11

    Mosaic Evolution: .............................................................................................................................. 11

    Fossils: ............................................................................................................................................... 12

    Fossils & Converging Evidence ...................................................................................................... 13

    Fossils & Scientific Predictions ...................................................................................................... 14

    The Improvement of Existing Classification .......................................................................................... 14

    Stability: ............................................................................................................................................ 15

    The Printed Sequence: .................................................................................................................. 16

    Graphical Representation ............................................................................................................. 16

    Phylogenetic Trees: ........................................................................................................................... 16

    Importance of Sound Classification: ................................................................................................. 17

    References: ........................................................................................................................................... 18

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    Higher Categories and Higher Taxa

    A higher category is a class into which all the higher taxa that are ranked at the same level in

    a hierarchic classification are placed

    This means that the taxa which are on the same level in the classification are given some rank

    and the category in which they are placed indicated their rank in the hierarchical

    classification. When we say that categories are based on concepts and taxa are based on

    zoological realities, it means that organisms are placed in taxa while the categories are some

    concept on which the taxa are arranged in categories.

    In Linnaean hierarchy there is no difference between species category and higher categories

    but in other respects it is quite different.

    The species category actually is signifies singularity, distinctness and differences but theother higher categories are based on the comparison among each other. In species categories

    all the taxa are placed according to their individual characters and their uniqueness but in the

    other higher categories, the taxa are compared and those which have similarities are placed

    together. They are arranged according to affinities among group of species.

    The taxon is given a certain limit and according to its characters it is placed in a higher

    category, as long as it is consistent with the theory of common decent. The higher taxa are

    themselves separated by a certain gap from other taxa of same rank. Meaning there are

    different taxa in a category and these taxa are separated from one another by some limit or

    boundary in characteristics.

    Another difference in higher categories and species is that in higher categories differentiation

    is through comparative studies which delimit the taxa and placed into higher categories but in

    species we use the concept of interbreeding and producing fertile offspring.

    Darwin stated the matter of hierarchy as;

    The natural system is genealogical in the arrangement, like a pedigree; but the degree of

    modification which the different groups have undergone has to be expressed by ranking them

    under different so-called genera, sub-families, families, sections, orders, and classes.

    It must be noted that the higher categorical rank evolve from a lower rank not the other way

    round. Because when we classify, we only have the organism and on that basis, we make all

    the ranks of classification.

    Different criteria and operations for ranking are employed by different schools of

    macrotaxonomy.

    The Genus:

    Thegenus is the lowest obligatory higher category and the lowest of all categories

    established strictly by comparative data (Cain, 1956).

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    A modern pragmatic definition of genus is as follows.

    The genus is the obligatory taxonomic category directly above that of the species in the

    Linnaean hierarchy.

    The generic taxon or genus is a monophyletic group containing one or more species and areseparated from other generic taxa by a decided gap.

    It is recommended that the size of the gap should be the inverse of the side of the taxon. The

    more the species in a group, easier it is to recognise it as a separate genus i.e. less gap is

    required. Smaller the species group more the gap required. Delimiting the species group as

    genera required a lot of experience, good judgement, and common sense.

    Generic Characters:

    It is the genus that gives characters not the characters that makes the genus.

    This is generally valid. The species included in the genus have many characters in common

    and the recognition of higher presence of correlated complex. This may include some minute

    and inconspicuous characters but as Darwin said;

    The importance, for classification, of trifling characters, mainly depends on their being

    correlated with several other characters of more or less importance. The value indeed of an

    aggregate of characters is very evident in natural history.

    This principle led to the many generic splitting. Whenever a new character was discovered it

    often led to the formation of new genera. Many genera cantbe diagnosed on the basis of a

    single character.

    Meaning of a genus:

    Whenever we assign a generic rank to group of species, we always try to describe the

    characters of all the species in that genus. Genus is a phylogenetic unit. This means that all

    the species in genus have been descended from near ancestors.

    Sometimes the genus is an ecological unit, consisting of species which have been adapted for

    same kind of environment.

    Species of the same genus also possess genetic identity. It is also possible that the species ofthe same genus can produce hybrids. Dubois has gone so far as to demand that all the species

    that produce hybrids, be placed in the same genus.

    For the recognition of generic taxon,

    Where alternative are available, we stand by the concept or theory that are more useful-the

    one that generalizes the most observation and permits the most reliable predictions (Inger

    1958:383).

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    The Family:

    A non-arbitrary definition of the family category is not possible. We can say that a kind of

    animal is often a family. To determine how distinctive a group of genera be to be classified as

    family differ from one group of thought to another. There is no definite criterion which

    indicated the rules for the family classification.

    Family can be defined as taxa;

    The family is a taxonomic category for a taxon composed of a single genus or a group of

    related genera. It is separated from other families by a decided gap.

    As in the case of genus the size of the gap is inverse ratio to the size of the family.

    The family is distinguished by certain adaptive character in a much greater extent than

    genera. The more distinct the character, the greater is the gap between the families. The

    families are older than genera and have a worldwide distribution. If an entomologist has 422families of British insects and goes to Africa he will see almost all the families there two. The

    characters of a family are especially important for a general zoologist as the each family

    presents some general characters that can be recognized at a glance, so one can easily

    recognize the members of that family easily. For example in spiders each family has some

    general characters which separate it from other families. The family Oxyopidae has large

    front eyes which is its distinguishing character.

    At a given locality the various families are generally distinct. They have their gaps which

    separate them. It is sometimes the case that when broadening the spectrum of families, we

    encounter some difficulties. Families are known to form some distinctive group in eachcontinent. So we have to make a larger group also known as a super family. Some families

    were based on homoplasy. These members were to be placed in the different families or

    separate families were to be made. Linnaeus did not recognise the family as a category but

    many of his genera have been elevated to the family rank. This shoes that there was a little

    difference between Linnaean genera and our families. With only 312 genera of animals,

    Linnaeus had no need for an intermediate category between genus and order. Now many new

    animals have been discovered, so new families have been formed. Nowadays 5600 families

    of Metazoa and 580 families of protozoa, totalling approximately 6200 families, have been

    formed.

    Orders, Classes and Phyla:

    These highest categories above the family are, on the whole, very well defined. The taxa

    ranked in these highest categories represent the main branches of the phylogenetic tree. They

    are characterized by a basic structural pattern laid down early in evolutionary history.

    Taxa in higher categories are definable in terms of a basic structural pattern, but except for

    certain highly specialized groups, the higher taxa are not primarily or even predominantly

    distinguished by special adaptations. The taxa included in higher categories are widely

    distributed in space and time.

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    According to the recent tabulations, there are approximately 29 phyla, 144 classes, and 722

    orders of recent animals.

    The Process of Ranking

    The process of ranking is not complete when species are placed in genera, because these

    genera have to be placed in family and these families into higher taxa until Linnaean

    hierarchy is complete.

    The reason for the hierarchy was clear to Darwin as he saw that diversity must be originated

    after speciation and that chance and adaptive processes were responsible for the gradual

    evolution of higher taxa and still higher taxa separated by the gap of divergent evolution and

    extinction.

    The three major schools of macrotaxonomy differ in the matter of classification.

    Phenetic system of classification is that, that does not try to reflect evolutionary relationships;

    instead it is based on physical similarities among organisms (phenotype); organisms are

    placed in the same category because they look alike. The pheneticist, only consider the

    similarities in characters in classification.

    Cladistic system of classification is based on the phylogenetic relationships and evolutionary

    history of groups of organisms. Cladists who follow Henning introduce a new rank at each

    branching point of cladogram and give sister groups identical categorical rank.

    For classical taxonomist, ranking results from the degrees of difference found among taxa;

    much divergence from the ancestral condition requires that a taxon be given a higher rank.

    Classifications proposed by the Cladists are on the whole rather more elaborate than those of

    evolutionary taxonomists, because Cladists want their classifications to reflect as minutely as

    possible the actual branching pattern of the genealogy (Wiley 1981:199-238); gaps are

    consciously ignored. Evolutionary taxonomist tends to emphasize major groupings and the

    existence of major gaps.

    Relationship and Similarity

    Relationship is used in different terms. Pheneticists take this relationship in only similarities

    of characters while Cladists take this relationship as only in genealogy. The evolutionary

    taxonomist consider both ancestor-descendent relationship and collateral relationship among

    sister lineages, while Cladists consider only holophyletic lineages. Developed mostly on the

    basic

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    Relationship between taxa is generally according to the similarities but sometimes similarities

    can lead to false grouping. This can be solved by the careful analysis of taxonomic

    characters. In this case one must distinguish between different potential causes of similarities.

    Homology:

    Homology forms the basis of organization for comparative biology. In 1843, Richard Owen

    defined homology as "the same organ in different animals under every variety of form and

    function". Organs as different as a bat's wing, a seal's flipper, a cat's paw and a human hand

    have a common underlying structure of bones and muscles. Owen reasoned that there must be

    a common structural plan for all vertebrates, as well as for each class of vertebrates.

    Homologous traits of organisms are due to sharing a common ancestor, and such traits often

    have similar embryological origins and development. This is contrasted with analogous traits:

    similarities between organisms that were not present in the last common ancestor of the taxa

    being considered but rather evolved separately. An example of analogous traits would be thewings of bats and birds, which evolved separately but both of which evolved from the

    vertebrate forelimb and therefore have similar early embryology.

    Whether or not a trait is homologous depends on both the taxonomic and anatomical levels at

    which the trait is examined. For example, the bird and bat wings are homologous as forearms

    in tetrapods. However, they are not homologous as wings, because the organ served as a

    forearm (not a wing) in the last common ancestor of tetrapods. By definition, any

    homologous trait defines a cladea monophyletic taxon in which all the members have the

    trait (or have lost it secondarily); and all non-members lack it.

    A homologous trait may be homoplasious that is, it has evolved independently, but from

    the same ancestral structure plesiomorphic that is, present in a common ancestor but

    secondarily lost in some of its descendants or (syn)apomorphicpresent in an ancestor

    and all of its descendants.

    The word homology, coined in about 1656, derives from the Greek homologos, where homo

    = agreeing, equivalent, same + logos = relation. In biology, two things are homologous if

    they bear the same relationship to one another, such as a certain bone in various forms of the

    "hand."

    Ray Lankester defined the terms "homogeny", meaning homology due to inheritance from a

    common ancestor, and "homoplasty", meaning homology due to other factors.

    As most problems in science, obvious hypothesis are accepted provisionally unless they lead

    to logical contradictions. The establishment of homologies ranges from simple comparison of

    features of closely related species, where the matter need hardly be given a second thought, to

    the frustratingly difficult comparison of dissimilar features in higher taxa.

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    Serial Homology:

    Serial homology is the representative or repetitive relation in the segments of the sameorganism, as in the lobster, where the parts follow each other in a straight line or series.

    This was coined by Owen (1866).

    Serial homology is the concept that initially existing structures were gradually modified viadiscrete intermediary steps until such time as an evolutionary novelty (e.g., jaws) appeared.

    Many examples of serial homology, e.g. the body segments of many animals (vertebrates,

    arthropods etc.), are examples of gene duplication on regulatory genes such as homeobox

    genes, followed by evolution differentiating the duplicated genes.

    Analogy:

    In biology, an analogy is a trait or an organ that appears similar in two unrelated organisms.

    The cladistic term for the same phenomenon is homoplasy, from Greek for same form.Biological anologies are often the result of convergent evolution.

    The classical example of an analogy is the ability to fly in birds and bats. Both groups can

    move by powered flight, but flight has evolved independently in the two groups. The ability

    to fly does not make birds and bats close relatives. The opposite of analogy is homology,

    where the ability or organ in question has been inherited from a common ancestor. The

    British anatomist Richard Owen was the first scientist to recognise the fundamental

    difference between analogies and homologies, and named them.

    Analogous traits will often arise due to convergence, where different species live in similar

    ways and/or similar environment, and thus face the same environmental factors. Both

    herrings and dolphins are streamlined. Both are active predators in a high drag environment,but the herring is a bony fish, the dolphin a mammal. In the Mesozoic, similarly streamlined

    ichthyosaurs navigated the worlds oceans, yet another example of a group evolving a

    similar shape due to the same environmental factors. A similar phenomenon is earless seals

    and eared seals. It was long debated whether the two groups are a single marine group, or

    represent two separate episodes of carnivores turning to a marine environment.

    Homoplasy:

    Homology means the similarity due to the common ancestor. Homoplasy, on the other

    hand, means similarity due to convergent evolution, but independent origins. For instance,

    take the fin and the caudal fin of tuna and of dolphin; they are similar but have independenthistories, and their similarity comes from adaptation to similar environments and functions.

    This is homoplasy. However, the fin of tuna and bonito are similar because of the common

    ancestor, and that's homology.

    The attempt to determine whether an observed similarity is a genuine homology or a

    homoplasy ought to be an indispensable component of every taxonomic analysis.

    Unfortunately, it is altogether ignored in unweighted phenetic procedures and often

    insufficiently considered in the construction of shortest trees.

    Convergence in characters:

    Convergent evolution describes the acquisition of the same biological trait in unrelatedlineages.

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    The wing is a classic example of convergent evolution in action. Although their last

    common ancestor did not have wings, both birds and bats do, and are capable of powered

    flight. The wings are similar in construction, due to the physical constraints imposed upon

    wing shape. Similarity can also be explained by shared ancestry. Wings were modified from

    limbs, as evidenced by their bone structure.

    Traits arising through convergent evolution are termed analogous structures, in contrast to

    homologous structures, which have a common origin. Bat and pterosaur wings are an

    example of analogous structures, while the bat wing is homologous to human and other

    mammal forearms, sharing an ancestral state despite serving different functions. Similarity

    in species of different ancestry that is the result of convergent evolution is called

    homoplasy. The opposite of convergent evolution is divergent evolution, whereby related

    species evolve different traits. On a molecular level, this can happen due to random

    mutation unrelated to adaptive changes. Convergent evolution is similar to, but

    distinguishable from, the phenomena of evolutionary relay and parallel evolution.

    Evolutionary relay describes how independent species acquire similar characteristics

    through their evolution in similar ecosystems at different timesfor example the dorsal finsof extinct ichthyosaurs and sharks. Parallel evolution occurs when two independent species

    evolve together at the same time in the same ecospace and acquire similar characteristics for

    instance extinct browsing-horses and paleotheres.

    Similarity can also result if organisms occupy similar ecological niches that is, a distinctive

    way of life. A classic comparison is between the marsupial fauna of Australia and the

    placental mammals of the Old World. The two lineages are clades that is, they each share a

    common ancestor that belongs to their own group, and are more closely related to one

    another than to any other cladebut very similar forms evolved in each isolated population.

    Many body plans, for instance sabre-toothed cats and flying squirrels, evolved

    independently in both populations.

    In some cases, it is difficult to tell whether a trait has been lost then re-evolved

    convergently, or whether a gene has simply been 'switched off' and then re-enabled later.

    Such a re-emerged trait is called an atavism. From a mathematical standpoint, an unused

    gene has a reasonable probability of remaining in the genome in a functional state for

    around 6 million years, but after 10 million years it is almost certain that the gene will no

    longer function.

    Convergent characters are mostly found when different animals become adapted to similar

    niches. For example, loons and grebes, which are both diving birds agree in numerous

    structural characters, particularly of legs, yet are only very distantly related to each other.

    Many marsupial adaptive types (wolves, mice, moles. badgers etc.) are remarkably similarto analogous placental types; the similarity is due to selection for similar modes of life.

    Parallel Characters:

    Similar characters derived independently by related taxa with a similar genetic background

    cause systematists the most trouble. These characters range from distinctive to rather simple

    characters.

    Characters that evolve from parallelism are not homologous because they are not derived

    from the same phenotypic feature of their nearest common ancestor. This interpretation is

    most congenial to taxonomists who are simply concerned with the construction of a

    character matrix.

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    Some evolutionary taxonomist consider characters due to parallelism to be homologous, the

    synamorphy is the potential to develop the character.

    Reversed characters:

    Phylogenists have tended to consider morphological change, an inexorably advancing

    process. Character analysis, however, remarkably often shows that what appears to beprimitive character are actually reversals (psuedoprimitiveness). There is much evolutionary

    reversal owing to the loss of specialization or other derived characters. Recent cladistic

    analysis shows that these reversals are very much common. They generally affect a single

    character of a character complex and can be discovered by character analysis. However,

    Dolos rule, according to which a more or less complex structure that has been lost is not

    reacquired in the same complexity, has few if any exceptions.

    Difficulties Encountered in Macrotaxonomy

    No matter what school of macrotaxonomy do the scientists belong to, they encounter manyproblems while classification and speciation. Some of the difficult situations that are not

    always considered by taxonomists require careful analysis.

    Mosaic Evolution:

    Mosaic evolution (or modular evolution) is the concept that evolutionary change takes place

    in some body parts or systems without simultaneous changes in other parts. Another

    definition is the "evolution of characters at various rates both within and between species".

    Its place in evolutionary theory comes under long-term trends or macroevolution.

    In the Neo-Darwinist theory of evolution, as postulated by Stephen Jay Gould, there is room

    for differing development, when a life form matures earlier or later, in shape and size. This

    is due to allomorphism. Organs develop at differing rhythms, as a creature grows and

    matures. Thus a "heterochronic clock" has three variants:

    1) Time, as a straight line;

    2) General size, as a curved line;

    3) Shape, as another curved line.

    When a creature is advanced in size, it may develop at a smaller size; alternatively, it may

    maintain its original size or, if delayed, it may result in a larger sized creature. That is

    insufficient to understand heterochronic mechanism. Size must be combined with shape, soa creature may retain paedomorphic features if advanced in shape or present recapitulatory

    appearance when retarded in shape. These names are not very indicative, as past theories of

    development were very confusing.

    A creature in its ontogeny may combine heterochronic features in six vectors, although

    Gould considers that there is some binding with growth and sexual maturation. A creature

    may, for example, present some neotenic features and retarded development, resulting in

    new features derived from an original creature only by regulatory genes. Most novel human

    features (compared to closely related apes) were of this nature, not implying major change

    in structural genes, as was classically considered.

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    By its very nature, the evidence for this idea comes mainly from palaeontology. It is not

    claimed that this pattern is universal, but there are now a wide range of examples from

    many different taxa. Some examples:

    The early evolution of bipedalism in Australopithecines, and its modification of thepelvic girdle took place well before there was any significant change in the skull, orbrain size.

    Archaeopteryx. Nearly 150 years ago Thomas Henry Huxley comparedArchaeopteryx with a small theropod dinosaur, Compsognathus. These two fossils

    came from the Solnhofen limestone in Bavaria. He showed that the two were very

    similar, except for the front limbs and feathers of Archaeopteryx. Huxley's interest

    was in the basic affinity of birds and reptiles, which he united as the Sauropsida. The

    interest here is that the rest of the skeleton had not changed.

    Meadow voles during the last 500,000 years. The pterosaur Darwinopterus. The type species, D. modularis was the first known

    pterosaur to display features of both long-tailed (rhamphorhynchoid) and short-

    tailed (pterodactyloid) pterosaurs. Evolution of the horse, in which the major changes took place at different times, not

    all simultaneously.

    Mammalian evolution, especially during the Mesozoic is undoubtedly one of thebest examples.

    Fossils:

    The fossil record has one important, unique characteristic: it is our only actual glimpse intothe past where common descent is proposed to have taken place. As such it provides

    invaluable evidence for common descent. The fossil record is not "complete" (fossilization

    is a rare event, so this is to be expected), but there is still a wealth of fossil information.

    If you look at the fossil record, you find a succession of organisms that suggest a history of

    incremental development from one species to another. You see very simple organisms at

    first and then new, more complex organisms appearing over time. The characteristics of

    newer organisms frequently appear to be modified forms of characteristics of older

    organisms.

    This succession of life forms, from simpler to more complex, showing relationships

    between new life forms and those that preceded them is strong inferential evidence of

    evolution. There are gaps in the fossil record and some unusual occurrences, such as what is

    commonly called the Cambrian explosion, but the overall picture created by the fossil

    record is one of consistent, incremental development.

    At the same time, the fossil record is not in any way, shape, or form suggestive of the idea

    of sudden generation of all life as it appears now, nor does it support transformationism.

    There is no way to look at the fossil record and interpret the evidence as pointing towards

    anything other than evolution despite all the gaps in record and in our understanding,

    evolution and common descent are the only conclusions that are supported by the full

    spectrum of evidence.

    This is very important when considering inferential evidence because inferential evidence

    can always, in theory, be challenged on its interpretation: why interpret the evidence as

    inferring one thing rather than another? Such a challenge is only reasonable, though, when

    one has stronger alternativean alternative that not only explains the evidence better than

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    what's being challenged, but which preferably also explains other evidence that the first

    explanation does not. If you look at the fossil record, you find a succession of organisms

    that suggest a history of incremental development from one species to another. You see

    very simple organisms at first and then new, more complex organisms appearing over time.

    The characteristics of newer organisms frequently appear to be modified forms of

    characteristics of older organisms.

    This succession of life forms, from simpler to more complex, showing relationships

    between new life forms and those that preceded them is strong inferential evidence of

    evolution. There are gaps in the fossil record and some unusual occurrences, such as what is

    commonly called the Cambrian explosion, but the overall picture created by the fossil

    record is one of consistent, incremental development.

    At the same time, the fossil record is not in any way, shape, or form suggestive of the idea

    of sudden generation of all life as it appears now, nor does it support transformationism.

    There is no way to look at the fossil record and interpret the evidence as pointing towards

    anything other than evolution despite all the gaps in record and in our understanding,

    evolution and common descent are the only conclusions that are supported by the fullspectrum of evidence.

    This is very important when considering inferential evidence because inferential evidence

    can always, in theory, be challenged on its interpretation: why interpret the evidence as

    inferring one thing rather than another? Such a challenge is only reasonable, though, when

    one has stronger alternative an alternative that not only explains the evidence better than

    what's being challenged, but which preferably also explains other evidence that the first

    explanation does not.

    We don't have this when with any form of creationism. For all their insistence that evolution

    is only a "faith" because so much evidence is "merely" inferential, they are unable topresent an alternative that explains all that inferential evidence better than evolution or

    even anywhere close to evolution. Inferential evidence isn't as strong as direct evidence, but

    it's treated as sufficient in most cases when enough evidence exists and especially when

    there are no reasonable alternatives.

    Fossils & Converging Evidence

    That the fossil record in general suggests evolution is certainly an important piece ofevidence, but it becomes even more telling when it is combined with other evidence for

    evolution. For example, the fossil record is consistent in terms of biogeography and if

    evolution is true, we would expect that the fossil record would be in harmony with current

    biogeography, the phylogenetic tree, and the knowledge of ancient geography suggested byplate tectonics. In fact, some finds, such as fossil remains of marsupials in Antarctica are

    strongly supportive of evolution, given that Antarctica, South America and Australia were

    once part of the same continent.

    If evolution did happen, then you would expect not just that the fossil record would show a

    succession of organisms as described above, but that the succession seen in the record

    would be compatible with that derived by looking at currently living creatures. For

    example, when examining the anatomy and biochemistry of living species, it appears that

    the general order of development for the major types of vertebrate animals was fish to

    amphibians to reptiles to mammals. If current species developed as a result of common

    descent then the fossil record should show the same order of development.

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    In fact, the fossil record does show the same order of development. In general, the fossil

    record is consistent with the developmental order suggested by looking at the characteristics

    of living species. As such it represents another independent piece of evidence for common

    descent, and a very significant one since the fossil record is a window to the past.

    Fossils & Scientific Predictions

    We should also be able to make some predictions and retrodictions as to what we would

    expect to see in the fossil record. If common descent occurred, then the organisms found in

    the fossil record should generally conform to the phylogenetic tree the nodes on the tree

    at which a split occurs represent common ancestors of the organisms on the new branches

    of the tree.

    We would predict that we could find organisms in the fossil record showing characteristics

    that are intermediate in nature between the different organisms that evolved from it and

    from the organisms from which it evolved. For example, the standard tree suggests thatbirds are most closely related to reptiles, so we would predict that we could find fossils

    which show a mix of bird and reptile characteristics. Fossilized organisms that possess

    intermediate characteristics are called transitional fossils.

    Exactly these sorts of fossils have been found.

    We would also expect that we would not find fossils showing intermediate characteristics

    between organisms that are not closely related. For example, we would not expect to see

    fossils that appear to be intermediates between birds and mammals or between fish and

    mammals. Again, the record is consistent.

    The Improvement of Existing Classification

    The complete reclassification of higher taxa may be the greatest achievement of a

    taxonomist, but the taxonomists daily routine consists of minor additions to or modification

    of existing classifications. The following are the most frequent activities of taxonomists.

    1. The assignment of the newly discovered species into the proper genus by answeringthese questions,

    a) Can it be included in an established genus?b) Does it require a new genus and possibly a new higher taxon?

    2. The transfer of an incorrectly placed taxon to its proper position.3. The splitting of a taxon into several taxa of the same rank either by cleaving a

    heterogeneous assemblage of species into several smaller and more homogenous

    ones or by removing an alien element from an otherwise homogenous taxon. When

    one breaks up too large a taxon, certain rules must be observed in the naming and

    rankling of the resulting new taxa.

    a) The rank of the original taxon is to be maintained if all possible. Finerdiscrimination can be achieved by means of the elaboration of subtaxa. For

    instance, it is usually less desirable to raise a heterogeneous family to the

    rank of superfamily and then to raise the previously recognized subfamilies

    to the rank of the families than it is to develop a finer subdivision of the

    subfamilies into tribes and genus groups.

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    b) In ranking no taxon should fall out of step with its sister groups. Theclassification of fossil humans by certain anthropologists who recognizes

    more than 30 genera of fossil hominids is an illustration of an unbalanced

    classification.

    c) A minimal number of names are desirable. If one adopts informal groupingssuch as species group (instead of a new gens or subgenus) and genus group(instead of a new family, subfamily, or tribe), the same information can be

    conveyed without burdening the memory and disturbing the balance of the

    hierarchy of categories.

    d) An inconveniently large taxon should be subdivided only if it can becleaved that is, if it can be divided into taxa of approximately equal size.

    Splitting off a number of monotype genera from a genus with 500 species

    would only impede information retrieval.

    4. The raising in rank of an existing taxon, e.g., a genus to a subfamily or a subfamilyto a family.

    5. The fusion of a several taxa of the same rank and the synonymizing of the taxa withjunior names.

    6. The reduction in rank of taxon, for instance that of genus to a sub genus or that of afamily to a subfamily. Such a reduction in rank may lead to a considerable

    simplification of a classification.

    Such a reduction is necessary in many groups of animals. For instance, there is little doubt

    that both birds and fishes are badly oversplit and that natural taxa in these groups are ranked

    in categories higher than necessary. Even the specialists concerned admit that there is little

    justification for having 412 families of fishes and 171 families of birds. What which of

    these families could be reduced to subfamilies? There is no easy answer.

    7. The creation of new higher taxon not by raising the rank of taxon but making anentirely new grouping of taxa of the next lower rank. The proposal of a new super

    family for a number of existing families or a new order for a series of families

    illustrates this procedure.

    8. This search for the nearest relative of an isolated taxon and, if this is successful, thestudy the question whether a new taxon of higher rank should be created for the

    newly established group of relatives.

    Stability:

    During such minor improvement activities a determined effort must be made to disturbed

    the stability of the currently prevailing classification as little as possible and to maintain, if

    nor improve its information retrieval qualities. The successfulness of a classification ascommunication system stands in direct relation to its stability, which is one of the basic

    prerequisites of any such systems. The names for the higher taxa serve as convenient labels

    for the purpose of information retrieval. Terms such as Coleoptera and Papilionidae must

    mean the same thing to zoologist all over the world to have maximum usefulness. This is

    even truer for the genus, which is included in the scientific name. The overriding need forstability, dictates that accepted taxa and their names is maintained in all cases except when

    they are strongly contradicted by the evidence.

    In publishing the classification that has resulted from ones taxonomic studies, one must

    present it either as a printed list, a diagram, or both. Both methods of presentation raise

    problems.

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    The Printed Sequence:

    The technology of printing requires a linear one-dimensional sequence for any printedclassification. One species will have to come first and another species last, while all others

    will have to be listed sequentially between the first and the last.

    An alphabetical sequence is often most useful for information retrieval. Themultidimensional phylogenetic tree with the dimensions of time, space and adaptational

    divergence must be converted into a single linear sequence. To do this, the taxonomists

    must make some inevitable compromises between various considerations. Most important

    among these considerations are the following three;

    1. Continuity: Each species is to be listed as near as possible to its closest relatives.2. Progression: Each series of species or higher taxa should begin with the one closest

    to the ancestral condition (the most primitive one), to follower by derived taxa

    deviate increasingly from the ancestral state.

    3. Stability: one should not change previously accepted sequences unless they areproved unequivocally wrong. A classification is a reference system and adoptingundocumented experimental changes can drastically reduce its usefulness,

    particularly in a comparison of faunal lists.

    Graphical Representation

    The deficiencies in printed sequence have led to scientist to represent the information in

    diagram form. They are mostly in tree like form with emphasis on the age and prevalence of

    each taxon.

    Each three schools of macrotaxonomy use different diagrams. Pheneticists use phenogramwhich is the representation of degree of phenetic differences. The cladogram of the Cladists

    is a branching diagram of taxa as inferred from synapomophies. It reflects the cladogenesis.

    The taxa are delimited by holophyly. The phylogram of evolutionary taxonomists is a

    phylogenetic dendrogram in which an attempt is made to represent the taxa by the totality of

    their characters, not only their diagnostic ones, and by changing the lengths and angles of

    internodes to reflect differing rates of evolution.

    Phylogenetic Trees:

    A phylogenetic tree or evolutionary tree is a branching diagram or "tree" showing the

    inferred evolutionary relationships among various biological species or other entities based

    upon similarities and differences in their physical and/or genetic characteristics. The taxajoined together in the tree are implied to have descended from a common ancestor.

    In a rooted phylogenetic tree, each node with descendants represents the inferred most

    recent common ancestor of the descendants and the edge lengths in some trees may be

    interpreted as time estimates. Each node is called a taxonomic unit. Internal nodes are

    generally called hypothetical taxonomic units (HTUs) as they cannot be directly observed.

    Trees are useful in fields of biology such as bioinformatics, systematics and comparative

    phylogenetics.

    The idea of a "tree of life" arose from ancient notions of a ladder-like progression from

    lower to higher forms of life (such as in the Great Chain of Being). Early representations ofbranching phylogenetic trees include a "Paleontological chart" showing the geological

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    relationships among plants and animals in the book Elementary Geology, by Edward

    Hitchcock (first edition: 1840).

    Charles Darwin (1859) also produced one of the first illustrations and crucially popularized

    the notion of an evolutionary "tree" in his seminal book The Origin of Species. Over a

    century later, evolutionary biologists still use tree diagrams to depict evolution because such

    diagrams effectively convey the concept that speciation occurs through the adaptive and

    random splitting of lineages. Over time, species classification has become less static and

    more dynamic.

    Importance of Sound Classification:

    A sound classification is the indispensable basis of much biological research. It is aprerequisite for the application of the comparative methods. Consistent with Simpsons

    (1961:7) definition of systematics as the scientific study of the kinds and diversity of

    organisms and of any and all relationship among them, the systematist studies all aspects

    of living organism. Such studies are often meaningless without a sound classification.

    Studies of species formation, the factors of evolution, and the history of faunas areunthinkable unless they are based on sound classifications. Classifications are particularly

    important in applied biology. The recognition of this importance explains why even today

    so many biologists are dedicated to the task of improving the classification of animals.

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