gpi-anchored proteinsonline.itp.ucsb.edu/online/evocell10/mayor2/pdf/mayor2...p p p e fr-gpi nbd-sm...
TRANSCRIPT
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P
P
P E
FR-GPI NBD-SM
GPI-anchored proteins ~10% of all membrane proteins
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Satyajit Mayor, National Centre for Biological Sciences KITP Evo Cell, Feb 4, 2010
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FR-GPI NBD-SM
Sabharanjak et al. Dev. Cell, 2002
GPI-anchored proteins are selectively endocytosed into distinct endosomal compartments called ‘GEECs’
Rob Parton- Univ. Queensland
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CTBHRP - 15s internalisation, Cav1-null fibroblasts, DAB-ascorbic acid method
Tomogram of a CLIC/GEEC endosome: Rob Parton
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GPI-anchored proteins are constitutively endocytosedvia a specialized pathway ‘ the CLIC/GEEC pathway’
•Sabharanjak, Sharma et al. Dev. Cell (2002) •Kirkham et al. J. Cell Biol. (2005) •Kalia et al. Mol. Biol. Cell (2006) •Chadda et al. Traffic (2007) •Kumari etal. Nature Cell Biol. (2007)
Dyn- Dyn +
Mayor and Riezman, Nature Reviews MCB, 2004 Mayor and Pagano, Nature Reviews MCB, 2007
P P E
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Drubin, Oster and co-workers , PLoS Biol 2009
Insights from Yeast
7
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Drubin, Oster and co-workers , PLoS Biol 2009 Insights from Yeast
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Drubin, Oster and co-workers , PLoS Biol 2009
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Balaji R./Swetha MG/Gagan Gupta/ Gautam Dey / Mukund Thattai/ Shameer/R. Sowdhamini/Krishnamurthy
A high throughput screening strategy to identify molecular components of the pinocytic pathway in Drosophila SR+ cells.
Genome : genome wide screen
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A high throughput screening strategy to identify molecular components of the pinocytic pathway in Drosophila SR+ cells.
Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
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A high throughput screening strategy to identify molecular components of the pinocytic pathway in Drosophila SR+ cells.
Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
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A high throughput screening strategy to identify molecular components of the pinocytic pathway in Drosophila SR+ cells.
Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
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Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
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Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
Classsification Screen
Pulse
Chase
Pulse Short Pulse Intensity down Fint and Tint down
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Balaji R/Swetha MG/Joseph Mathew/Gagan Gupta,/ Gautam Dey/ Mukund Thattai/Shameer K/R.Sowdhamini
Classsification Screen
Pulse
Chase
Pulse Actin and Microtubule Interactors
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Lists of Genes: What are they good for?
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www.ncbs.res.in
Manufacturing Rafts: Active membrane organization in living cells
Satyajit Mayor National Centre for Biological Sciences (NCBS), Bangalore, India in collaboration with Madan Rao NCBS/ Raman Research Institute (RRI) , Bangalore
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GPI-anchored proteins are constitutively endocytosedvia a specialized pathway ‘ the CLIC/GEEC pathway’
•Sabharanjak, Sharma et al. Dev. Cell (2002) •Kirkham et al. J. Cell Biol. (2005) •Kalia et al. Mol. Biol. Cell (2006) •Chadda et al. Traffic (2007) •Kumari etal. Nature Cell Biol. (2007)
Dyn- Dyn +
Mayor and Riezman, Nature Reviews MCB, 2004 Mayor and Pagano, Nature Reviews MCB, 2007
P P E
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P P E
Dyn +
•Constitutive •Lipid-selective •Cdc42-regulated •Cholesterol sensitive •Actin dependent Does not utilize •Dynamin •Clathrin/ Caveolin •Arf6 •RhoA •Rac1
GPI-anchored proteins are internalized via a pinocytic pathway that is
Mayor and Riezman, Nature Reviews MCB, 2004 Mayor and Pagano, Nature Reviews MCB, 2007
Membrane domains ?
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Towards a new picture of membrane organization
The role of an active actin cortex- experiments and theory
Organization of GPI- tethered proteins at the cell surface- nano-scale clusters
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Fluid Mosaic- patchwork quilt
6 nm Created by P. Kinnunen (University of Helsinki, Finland); source Edidin, Nature Reviews MCB, 2003
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Surface distribution of GPI-APs in CHO cells
300300 nmnm
P P E
Diffraction Limit ~ 300 nm
GPI-anchored protein immunoGold EM analysis
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Varma and Mayor, Nature (1998)
measure fluorescence anisotropy
homo-FRET
Weber G., Trans. Farad. Soc. 1954
Depolarization FRET
Forster’s energy transfer mechanism
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homo-FRET
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Mainly monomers and 20-40 % as nano-clusters –
Varma and Mayor, Nature 1998 Sharma, Varma, Sarasij et al., Cell 2004
6 nm
Freidrichson and Kurchalia, Nature 1998 Paladino et al., JCS 2008
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NSOM Imaging of GPI-anchored proteins
van-Zanten et al PNAS, 2009
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Nano-clustering of H-Ras and Gangliosides
< 10 nm clusters of lipid-anchored proteins, sugars Cholesterol-dependent Concentration independent Actin-cytoskeleton sensitive Oncogenic signaling/ Toxin Delivery
Prior et al , JCB, 2003 Plowman et al, 2005 Fujita et al, MBC 2007
Hancock, Nature Reviews MCB, 2003
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GPI-APs are flexibly organized as monomers and mixed nano-clusters
Concentration Independent Cholesterol Sensitive Mixed and Flexible
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Endocytosis of GPI-anchored proteins and nanoclusters?
Dyn- Dyn +
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pre-existing organization induced rafts
P P E
Dyn - Mayor and Rao, Traffic (2004) Sharma et al, Cell (2004)
GPI-anchored protein domains
? ?
•Nanoclusters as sorting signals
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High resolution FRET imaging
High resolution ~ FRET imaging at 300 nm spatial resolution
Wide-field MP Line scanning
Goswami et al. Cell 2008
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Spatial distribution of nanoclusters
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Spatial distribution of nanoclusters
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Steady State Distribution:
Nanoclusters are enriched in flat-scapes of the cell membrane
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Steady State Distribution:
Nanoclusters are enriched in flat-scapes of the cell membrane
~800-1250
< 450
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Steady State Dynamics:
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Steady State Dynamics:
Temperature sensitive reformation
Nanoclusters do not reform at lower temperatures Nanoclusters are immobile ?
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Steady State Dynamics: Immobile Nanoclusters
20 °C
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37 °C Steady State Dynamics: Reforming Nanoclusters
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Steady State Dynamics:
Kinetics of aggregation and fragmentation
Life time~ < 200 msec - 1 sec
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Steady State Dynamics:
Kinetics of aggregation and fragmentation
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Steady State Dynamics:
Non-homogenous
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Steady State Dynamics:
Non-Arrhenius
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Perturbations of Steady State Dynamics Cholesterol Depletion
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Perturbations of Steady State Dynamics Actin and Myosin perturbation
blebistatin Latrunculin
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Actin perturbation and nanocluster distribution
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Characteristics of Nanoclusters
• Dynamics is Non-Arrhenius • Sensitive to actin and myosin
perturbation • Spatially inhomogeneous • Formed in regions that are supported by
actin cortex • Immobile
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Nanoclusters are depleted and then repleted in blebs
Spontaneous blebs – Whole Cell
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Nanoclusters are depleted and then repleted in blebs after actin is recruited
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Active Membrane Complexes : a central role for actin
pre-existing organization induced rafts
Sorting or Signaling Function
Localization of nanoclusters with specific types of actin organization
Actin polymerization and
contractility perturbation dramatically modifies nanocluster distribution
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Long Static crosslinked actin filaments
Membrane templated by cortical actin
Horizontal crosslinked short dynamic actin
Horizontal crosslinked short dynamic actin
Morone et al JCB 2007
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Membrane templated by cortical actin
Long Static actin Orientation N Concentration C
Short dynamic actin Orientation n Concentration c
Acto-Myosin Contractility
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Long Static actin Orientation N Concentration C
Short dynamic actin Orientation n Concentration c
Acto-Myosin Contractility
Active hydrodynamics of cortical actin filaments
Simha+Ramaswamy, PRL (2002) Hatwalne et al, PRL (2004) Muhuri et al, EPL (2006) Ramaswamy+Rao, NJP (2007)
Liverpool, Marchetti
Joanny, Prost, Kruse, Julicher Sriram, Madan
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Cytoskeletal activity drives and regulates molecular complexation on cell surface
Active composite cell surface
Inert Particles Passive Particles Active Particles
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Active actin membrane composite
Active: Actively
manufactured Non-equilibrium
principles Composite of
membrane and cytoskeleton
Living - regulated
Passive: Pre-existing
phase segregation
Equilibrium
principles Membrane lipid
environment Passively formed
Created by P. Kinnunen (University of Helsinki, Finland); source Edidin, Nature Reviews MCB, 2003
Flip-flop: lipid flux: secretion: endocytosis
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People *Rajat Varma, NYU/NIH *Pranav Sharma, CSH
*Shefali Sabharanjak, B’lore *Samit Chatterjee, CSH, NY *Pranav Sharma, CSH, NY *Manjula Kalia, ICGEB, N. Delhi
NCBS Wellcome Trust
DST & DBT JST-ICORP
NanoTech Council
Sameera Bilgrami Debanjan Goswami Subhashri Ghosh Riya Raghupathy Suvrajit Saha
Rahul Chadda Sudha Kumari
Rob Parton, (Australia), G.Krishnamoorthy, (TIFR, Mumbai) Aki Kusumi, (Japan) Ram Vishwakarma (NII, Delhi)
Membrane Organization Endocytosis
Madan Rao, (RRI/NCBS) G. Kripa, (RRI/NCBS) Abhishek Chaudhry (NCBS) *Sarasij RC, (RRI/NCBS) H. Krishnamurthy, CIFF NCBS