glycolysis part 2 - ksu · 2018. 2. 5. · bch 340 lecture 4 there are three ... this enzyme needs...
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Glycolysis Part 2BCH 340 lecture 4
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There are three steps in glycolysis that have enzymes which regulate the flux of glycolysis
These enzymes catalyzes irreversible reactions of glycolysis
Regulation of Glycolysis
I. The hexokinase (HK)II. The phoshofructokinase (PFK)III. The pyruvate kinase
They are regulatory enzymes which are regulated by the level of ATP in the cell
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The most important regulatory enzyme which catalyzes the first irreversible reaction unique to the glycolytic pathway (the committed step)
Allosteric enzyme inhibited by elevated level of ATP, which: is the end product of glycolysis as well as it is substrate for PFK-1
I- Phosphofructokinase-1 (PFK-1):
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o Sigmoidal dependence of reaction rate on [fructose-6-P] is seen.
o At high [ATP], PFK has lower affinity for the other substrate, fructose-6-P. ATP binds to inhibition site of PFK, and thereby decreases the activity of enzyme.
I- Phosphofructokinase-1 (PFK-1):
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AMP, present at significant levels only when there is extensive ATP hydrolysis, antagonizes effects of high ATP.
AMP, ADP and Fructose 2, 6 biphosphate act as allosteric activators of PFK-1.
I- Phosphofructokinase-1 (PFK-1):
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It is allosterically inhibited by its product Glucose 6 phosphate.
In liver, glucokinase is inhibited by Fructose 6P and ATP (acts as a competitive inhibitor of this enzyme)
II- Hexokinase
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It is allosterically inhibited by ATP. ATP binding to the inhibitor site of PKdecreases its ability to bind to PEP the substrate.
It is also inhibited by Acetyl Coenzyme A and long chain fatty acid because they are source rich ATP which inhibits PK.
III- Pyruvate Kinase
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Insulin is secreted in hyperglycemia and after carbohydrates feeding, it causes:
1. Induction for synthesis of glycolytic key enzyme
2. Activation of protein phosphatase 1 producing dephosphorylation and activation of glycolytickey enzymes
Insulin and Glucagon (secreted by the pancreas) are the main endocrine that modulate blood glucose levels and they act antagonistically
Hormonal regulation of glycolysis
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Glucagon is secreted in hypoglycemia or in CHO deficiency and it affects liver cells mainly as follows:
1. It acts as repressor of glycolytic key enzymes (PFK1, Pyruvate kinase, glucokinase)
2. It produces phosphorylation of specific enzymes leading to inactivation of glycolytic key enzymes
Hormonal regulation of glycolysis
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Hormonal regulation of glycolysis
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Inhibitors of glycolysis
2-deoxyglucose: inhibits hexokinase
Mercury and iodoacetate: inhibit glyceraldehyde-3-P dehydrogenase
Fluoride: inhibits enolase by removal of Mg2+ as Mg fluoride
Arsenate: is uncoupler of oxidation and phosphorylation, it forms 1-arseno-3-phosphoglycerate which interferes with ATP formation at substrate level
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Pasteur Effect
It is the inhibition of glycolysis by the presence of
oxygen
Explanation: Aerobic oxidation of glucose produces
increased amount of ATP and citrate. Those inhibit
PFK1.
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Mitochondrial pathway for glucose oxidation (TCA cycle)
BCH 340 lecture 5
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Under aerobic conditions , pyruvate (the product of glycolysis) passes by special pyruvate transporter into mitochondria which proceeds as follows:
1. Oxidative decarboxylation of pyruvate into acetyl CoA.
2. Acetyl CoA is then oxidized completely to CO2, H2O
through Krebs' cycle
G Pyr
cytosol Mitochodria
glycolyticpathway
secondstage
thirdstage
CO2 + H2O+ATPPyr CH3CO~SCoA
firststage
TAC
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Irreversible reaction catalyzed by a multi enzyme
complex associated within the inner mitochondrial
membrane known as Pyruvate dehydrogenase
complex
Oxidative decarboxylation of Pyruvate to Acetyl CoA
COO-
C
CH3
NAD+ NADH + H +
O
pyruvate
CH3CPyruvate
dehydrogenasecomplex
Acetyl CoA
O
~SCoA+ HSCoA + CO2
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HSCoA
NAD+
This enzyme complex contains 3 subunits, which catalyze the reaction in 3 steps:
E1 pyruvate dehydrogenase
E2 dihydrolipoyl transacetylase
E3 dihydrolipoyl dehydrogenase
Pyruvate dehydrogenase complex
Es
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HSCoA
NAD+
This enzyme needs 5 coenzymes (all are vitamin B complex derivatives)
Pyruvate dehydrogenase complex
Thiamine pyrophosphate, TPP (VB1)
HSCoA (pantothenic acid)
cofactors lipoic Acid
NAD+
FAD (VB2)
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Pyruvate dehydrogenase(active form)
allosteric inhibitors:
ATP, acetyl CoA,NADH, FA
allosteric activators:
AMP, CoA,
NAD+,Ca2+
pyruvate dehydrogenase (inactive form)
P
pyruvate dehydrogenase kinase
pyruvate dehydrogenase phosphatase
ATP
ADPH2O
Pi
Ca2+,insulin acetyl CoA,NADH
ADP,
NAD+
Regulation of Pyruvate dehydrogenase complex
Low levels E:E and product accumulation:
(Active dephosphorylated form)
(Inactive phosphorylated form)
1 2
Regulation of E1 by covalent modification through phosphorylation
3
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Regulation of Pyruvate Dehydrogenase
Irreversible reaction must be tightly controlled-- three ways
Allosteric Inhibition
Inhibited by products: acetyl-CoA and NADH
Inhibited by high ATP
Allosteric activation by AMP
Ratio ATP/AMP important
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Covalent modification (hormonal regulation):
Through Phosphorylation/dephosphorylation of E1
PDH exists in two forms:
Phosphorylated (inactive): Protein kinase enzyme
converts active into inactive enzyme
Dephosphorylated (active): Phosphatase
enzyme converts inactive into active
NB: In vitro inhibition of PDH:• Arsenic• Mercury
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Acetyl CoA
cholesterolsynthesis
Cholesterolsteroidhormones
(endocrine glands)
Figure: Metabolic sources and fates
of acetyl CoA
GLUCOSE
PYRUVATE
glycolysis
pyruvatedehydrogenase
lipogenesis
-oxidation
Fatty acids
CO2
citric acidcycle
ketoneoxidation
ketogenesis(liver only)
Ketone bodies
(Cytoplasm)
In mammals, acetyl CoA is essential to the balance between CHO and fat metabolism
Acetyl CoA is an important molecule in metabolism used in many biochemical reactions
Acetyl CoA functions as:
1. input to Krebs Cycle, where the acetate moiety is further degraded to CO2
2. donor of acetate for synthesis of FA, ketone bodies, & cholesterol
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Figure: Metabolic sources and fates
of pyruvate and acetyl CoA
GLUCOSEgluconeogenesis
PYRUVATE
glycolysis
Lactate
lactatedehydrogenase
Alanine
alanineamino-transferase
Oxaloacetate
pyruvatecarboxylase
Acetyl CoA
pyruvatedehydrogenase
lipogenesis
-oxidation
Fatty acids
cholesterolsynthesis
Cholesterolsteroidhormones
(endocrine glands)
CO2
citric acidcycle
ketoneoxidation
ketogenesis(liver only)
Ketone bodies
(Cytoplasm)
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Kreb's cycle
Also known as Citric Acid Cycle (CAC)
Or
Tricarboxylic Acid Cycle (TCA)
Or
Catabolism of Acetyl CoA (CAC)
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Definition: TCA is a series of enzyme-catalyzed
chemical reactions in which acetyl CoA is oxidized
into CO2, H2O and energy.
Location: Occurs in the matrix of the mitochondrion
= aerobically
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o The enzymes of TCA are present in the mitochondrial
matrix either free or attached to the inner surface of the
mitochondrial membrane.
Steps:
o The cycle is started by acetyl CoA (2C) and oxaloacetate (4 C)
to form citrate (6C). It ends by oxaloacetate (4C).
o The difference between the starting compound (6C) and the
ending compound (4C) is 2 carbons that are removed in the
form of 2 CO2. These 2 carbons are derived from acetyl CoA.
For this reason acetyl CoA is completely
catabolized in TCA and never gives glucose.
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Non-equilibrium reaction catalyzed by citrate synthase
Inhibited by:• ATP
• NADH
• Citrate - competitive inhibitor of oxaloacetate
The cycle begins with the condensation of acetyl-CoA and oxaloacetate to form citrate
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Equilibrium reactions
Results in interchange of H and OH
Aconitase then catalyzes the interconversion of citrate and isocitrate via dehydration and hydration
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Isocitrate is then converted to α-ketoglutarate via oxidative decarboxylation, producing CO2
Isocitrate dehydrogenated and decarboxylated to give -
ketoglutarate
Non-equilibrium reaction catalyzed by isocitrate dehydrogenase
NAD+
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Isocitrate is then converted to α-ketoglutarate via oxidative decarboxylation, producing CO2
Results in formation of:
o NADH + H+
o CO2
Stimulated by isocitrate, NAD+, Mg2+, ADP, Ca2+
Inhibited by NADH and ATP
NAD+
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TPP lipoate
FAD
The α-ketoglutarate is then converted to succinyl-CoA via another oxidative decarboxylation, producing the second CO2
Series of reactions result in decarboxylation, dehydrogenation and
incorporation of CoASH
Non-equilibrium reactions catalyzed by -ketoglutarate dehydrogenase
complex
Stimulated by Ca2+
Inhibited by NADH, ATP, Succinyl CoA
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Equilibrium reaction catalyzed by succinate thiokinase
Results in formation of GTP and CoA-SH
Nucleoside diphosphate kinase interconverts GTP and ATP
by a readily reversible phosphoryl transfer reaction: GTP +
ADP ↔ GDP + ATP
Succinyl CoA is then converted to succinate, accompanied by the formation of a GTP (or ATP)
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Succinate dehydrogenated to form fumarate
Equilibrium reaction catalyzed by succinate dehydrogenase
–Only Krebs enzyme contained within inner mitochondrial membrane
Results in formation of FADH2
Succinate is then converted to fumarate by dehydrogenation
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Equilibrium reaction catalyzed by fumarase
Fumarate is then converted to malate via hydration
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The cycle ends by the regeneration of oxaloacetate from L-malate
Malate dehydrogenated to form oxaloacetate
Equilibrium reaction catalyzed by malate dehydrogenase
Results in formation of NADH + H+
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Acetyl CoAPyruvate
Oxaloacetate
fatty acids, ketone bodies
PDH
Glucose
glycolysis
CoA
Citrate
cis Aconitate
Isocitrate
-Ketoglutarate
NAD+
NADH, CO2
Fumarate
FAD
FADH2
Malate
NAD+
NADH
Succinate GDP
GTP
ADP
ATP
CoA, NAD+
Succinyl CoANADH, CO2
Figure: Reactions of the citric acid cycle
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Products of Krebs Cycle
2 CO2
3 NADH
1 ATP
1 FADH2
Each NADH energizes 3 ATP
Each FADH2 energizes 2 ATP
Double this list for each glucose
ATP Yield
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By transamination, oxaloacetate is converted to aspartate
The amphibolic nature of Citric acid cycle
This pathway is utilized for the both catabolic reactions to generate energy as well as for anabolic reactions to generate metabolic
intermediates for biosynthesis
By transaminationα-Ketoglutarate is converted to glutamate
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What are the key regulated enzymes in citrate cycle?
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Pyruvate dehydrogenase – not a citrate cycle enzyme but it is critical to flux of acetyl-CoA through the cycle; this multisubunitenzyme complex is inhibited by acetyl-CoA, ATP and NADH.
What are the key regulated enzymes in citrate cycle?
Citrate synthase – catalyzes the first reaction in the pathway and can be inhibited by citrate, succinyl-CoA, NADH and ATP; inhibition by ATP is reversed by ADP.
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Isocitrate dehydrogenase - catalyzes the oxidative decarboxylation of isocitrate by transferring two electrons to NAD+ to form NADH, and in the process, releasing CO2, it is activated by ADP and Ca2+ and inhibited by NADH and ATP
What are the key regulated enzymes in citrate cycle? (Cond…)
α-ketoglutarate dehydrogenase - functionally similar to pyruvatedehydrogenase in that it is a multisubunit complex, requires the same five coenzymes and catalyzes an oxidative decarboxylationreaction that produces CO2, NADH and succinyl-CoA; it is activated by Ca2+ and AMP and it is inhibited by NADH, succinyl-CoA and ATP
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Inhibitors of TCA
Fluoroacetyl CoA: it combines with oxaloacetate giving rise to fluorocitrate which inhibits aconitase enzyme
Malonic acid: inhibits succinate dehydrogenase (competitive inhibition)
Arsenate and Mercury : inhibit Pyruvate dehydrogenase and α-ketoglutarate dehydrogenase complex by reacting with sulphydral group of lipoic acid leading to accumulation of pyruvic lactic acid and α-ketoglutarate with acidosis