global portal includes phenotypic data with traditional passport data
DESCRIPTION
Standards for including PGRFA phenotypic data. Global portal includes phenotypic data with traditional passport data. Working Session TDWG 2009 12 Nov. Michael Mackay. Content. Methods for assessing accessions against traits Need for flexibility managing methods - PowerPoint PPT PresentationTRANSCRIPT
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Global portal includes phenotypic data with traditional passport data
Working SessionWorking SessionTDWG 2009TDWG 2009
12 Nov12 Nov
Michael Mackay
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ContentMethods for assessing accessions against
traitsNeed for flexibility managing methodsCore metadata to support methods?
Environmentally sensitive traits require information about the experiment/locationHow to support multiple location data?Core metadata to support environmentally
sensitive data?
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Methods - 1
• One trait can be assessed using different methods
• For example, ‘drought tolerance’ can be assessed by:– Avoidance / phenology– Deep roots / morphology– Na exclusion / chemical– Etc.
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Passport
Methods – 2
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Methods - 3
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Methods - 2
Trait Category
Trait
Trait Method
Trait Method 1Trait Method 2
Trait Method 3
LocationMetadata
11
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Multi Method example
Two methods to “measure” RWA But what about:• Biotypes• Races• etc?
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Method metadata
• Current portal handles scores, units and ranges;
• Need to add functionality for biological variety: biotypes of insects, races of pathogens etc.
• Citation for a method?
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Other method metadata?Other method metadata?
• ?
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Location/experiment metadata - 1Location/experiment metadata - 1Current status in global portal
Comment on categories of traits?
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Location/experiment metadata - 2Location/experiment metadata - 2• Experiment identification/name/title.• Purpose of experiment.• Location description/geo-reference/altitude.• Start and end dates.• Field/lab/greenhouse options?• Description of treatments, plot size etc?• Citation – if available?• Institution and individual responsible?• Contact details?
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Location/experiment metadata - 3Location/experiment metadata - 3
The intention is to include summary data only, but what additional info is needed: Maximum, minimum, standard deviation???
??
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Some functionality considerations
• Start with crop, then ‘drill’ the query down.
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‘‘Drilling down’Drilling down’Step 1: Start with Barley accessions with geo-references
Step 2: Add NSGC and Origin of France to the query.
Replacecurrentquery
Add tocurrentquery
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Some functionality considerations
• Start with crop, then ‘drill’ the query down.
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Additional location metadata - 4
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Discussion points - 1
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Discussion points - 2
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Discussion points - 3
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Discussion points - 4