fppars cloning and functional analysis of fish peroxisome proliferator-activated receptors the...
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fPPARs
Cloning and functional analysis of fish Peroxisome Proliferator-Activated Receptors
The transcriptional control of lipid metabolism in farmed fish species
fPPAR groupGrigorios Krey, Efthimia Antonopoulou, Evridiki BoukouvalaNational Agricultural Research Foundation, Fisheries Research Institute, Kavala, Greece
Michael J. Leaver, Douglas R. Tocher, Tariq EzazInstitute of Aquaculture, University of Stirling, Stirling, UK
Jose M. Bautista, Amalia Diez MartinMol Biol and Biochem IV, Veterinary Faculty, Universidad Complutense de Madrid, Spain
Alex ObachNutreco Aquaculture Research Centre, Stavanger, Norway.
Guillermo BoresCripesa, Port Pesquer, Tarragona, Spain
FISH OIL USE
Actual
Projected
Annual production stable at 1.1 to 1.4 million tons
?!
Fish Oil Replacement
• Fat Deposition?
• Nutritional Quality?
• Disease Resistance?
• Need a better understanding of underlying physiology
Peroxisome proliferator-activated receptors
• PPARs– Transcription factors– Control genes involved in lipid homeostasis– Activated by PUFA and their eicosanoid
derivatives
PPAR RXR
PUFA 9-cisRA
GENE TRANSCRIPTON
LIGAND BINDING
DNA BINDING
CHROMOSOME
A/BA/Bhinge
LIGAND BINDING
AAGTCAnAAGTCA
PPRE
•PPARs are members of nuclear hormone receptor family•PPARs bind as heterodimer with RXR to PPRE•PPARs are activated by fatty acid (PUFA) ligands•Three forms in mammals, , and
PPARs
Coactivator proteins
BLOOD
FA
FA
FA
FA
FA
FA
Bile acids
GUT
LIVER
ADIPOSEHEART
INNATEIMMUNE
OTHERTISSUES
LDL
HDL
PPAR
PPAR PPAR
PPAR
PPARFXR
PPARs and Lipid Homeostasis
• Transport– Apolipoprotien AI, AII, CIII, Liver fatty acid binding protein; Fatty acid
transport protein; CD36
• Biosynthesis– Acetyl-CoA synthase; Malic enzyme; Stearoyl-CoA desaturase I
• Storage– Adipocyte lipid binding protein; Phosphoenolpyruvate carboxylase
• Metabolism– Acyl-CoA oxidase; Bifunctional enzyme; Carnitine palmitoyltransferase; CYP4A1,
4A6; Lipoprotein lipase; Medium chain Acyl-CoA dehydrogenase, 3-hydroxy, 3-methylglutaryl-CoA synthase; Uncoupling protein I
Strategy
• Do fish have PPARs?– Construct and screen genomic libraries
• What are their ligand activation profiles?– Express fish PPAR genes in cell culture
• Diet formulation– Use results to produce a rational framework for fish
oil replacement
Species
Plaice (Pleuronectes platessa) Atlantic salmon (Salmo salar)
Sea bream (Sparus aurata) Sea bass (Dicentrarchus labrax)
Genomic DNA
Partial digest
bacteriophage arms
ligatePackage, plate on lawn of E. coli and
screen with hybridisation probe
Isolate and sequence geneRT-PCR
Isolate and sequence cDNAs
Stategies for PPAR Gene and cDNA Isolation
+
Plaice and SalmonSea bass and Sea bream
PCR of conserved regions
Plaice PPAR Gene Structures
Human PPAR genes are >80kb
* *
* *
1kb
pPPARa
pPPARb
pPPARg
7kb
4.5kb
10kb
Phylogenetic plot of PPAR sequences.
xl. Xenopus laevis; hs, Homo sapiens; gg, Gallus gallus; ss, Salmo salar; pp, Pleuronectes platessa; dl, Dicentrarchus labrax; sa, Sparus aurata.
xlPPAR
ggPPAR
hsPPAR100
ssPPAR
saPPAR
dlPPAR
ppPPAR
85
99
89
100
xlPPAR
ggPPAR
hsPPAR
ssPPAR1
ssPPAR2
saPPAR
dlPPAR
ppPPAR
99
87
99
99
97
98
xlPPAR
ggPPAR
hsPPAR96
ssPPAR
saPPAR
dlPPPAR
ppPPAR
99
100
100
96
99
100
100
Southern Blot.
SstI restricted plaice DNA was hybridised to the probes generated from the first coding exons of the three plaice PPAR genes, or the DNA-binding region. Sizes of fragments correspond to those predicted from the gene sequences.
A/B C D E/F
Ligand-independent transactivation (phosphorylation?)
DNA-binding,Dimerisation,Co-activator-binding
Ligand-binding,Co-activator-binding
20% 90% 70%
PPAR structure and function
PPAR RXR
E/FE/F
CCA/B A/B
DNA PROMOTER
PP SA SS DL PP SA SS DL
ACO-A GSTA.2
C C
Species
PPAR
Probe
PPAR RXR
PPRE
DNA-binding domains
PPRE
EMSA
0,00
0,50
1,00
1,50
2,00
2,50
1 2 3 4 5 6 7 8 9 10 11 12 13
0 1 2 3 4 5 6 7 8 9 10 11 12 13
1. No ligand, 2. Phytanic acid, 3. DHA, 4. Arachidonic acid, 5. EPA 6. ETYA, 7. Linolenic acid, 8. Linoleic acid, 9. CLA (10E, 12Z), 10. CLA (9Z, 11E), 11. CLA (9E, 11E), 12. CLA mix, 13. 8(S)-HETE, A. SRC1, 0. GST-CLA mix
CARLA: Sea Bream PPAR LBDA
Ligands
Ass
ocia
tion
val
ues
(no
liga
nd=
1)
35S
35S
PPAR-LBDCo-activator protein
SRC1
SRC1
Ligand
Complex Formation
PAGE
Autorad
CMV PPAR cDNA
CAT genePPRE
CMV PPAR cDNA
CAT genePPRE
Ligate constitutive gene promoter to PPARgene
Ligate a PPAR response element (PPRE) to CAT
reporter gene
Co-transfect to cells in culture(Multiwell plates)
Treat cells with potential PPAR activators
CAT genePPRE
Measure CAT(Muliwell ELISA)
PPAR Transactivation Assays
CAT
PPAR
PPAR RXR
Plaice PPAR Tissue
Expression Profile
Lane 1, liver; 2, kidney; 3, small intestine; 4, gill; 5, heart; 6, spleen;7, white muscle; 8, red muscle; 9, brain; 10, visceral adipose
1 2 3 4 5 6 7 8 9 10
PPAR
PPAR
PPAR
1. Liver, 2. Kidney, 3. Intestine, 4. Gill, 5. Heart, 6. Spleen, 7. White muscle, 8. Red muscle, 9. Brain, 10. Adipose
Sea Bream PPAR Tissue Expression ProfileRNase protection
Immunochemical analysis
Anti PPAR Anti PPAR
Tissue expression profile of PPARs in sea bream
Next Steps
• PPAR activators in primary hepatocytes and adipocytes– Determine fatty acid profiles and metabolic indices– Gene expression profiling
• Dietary trial with salmon and sea bream– Measure growth, gene expression, fatty acid profiles
Dietary Trial
• PPAR- Liver and Heart- Fatty acid oxidation- – Conjugated linolenic acid (CLA), 16:1, 18:1 ???
• PPAR- All tissues- Function?– 16:1
• PPAR- Adipose - Fat Sorage– ???
• Diet- 16:1 (+ 18:3+18-2) + CLA