fourier transform imaging spectrometer at visible wavelengths...when a multicolor light is used, the...

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1 Fourier Transform Imaging Spectrometer at Visible Wavelengths Noah R. Block Advisor: Dr. Roger Easton Chester F. Carlson Center for Imaging Science Rochester Institute of Technology May 20, 2002

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  • 1

    Fourier Transform ImagingSpectrometer at Visible

    Wavelengths

    Noah R. Block

    Advisor: Dr. Roger Easton

    Chester F. Carlson Center for Imaging Science

    Rochester Institute of Technology

    May 20, 2002

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    Abstract

    The purpose of the experiment is to construct a device to calculate the spectrum of all the

    pixels in the scene. The experimental setup is a Michelson interferometer that has been

    modified to add a second reference beam illuminated with a known wavelength. The

    additional light beam is used to compensate for errors in the motion of the movable

    mirror due to the imprecise and unrepeatable motor. The reference beams error is used to

    correct the object beams spectrum through error analysis.

    The results for a two-dimensional scene are given as a three-dimensional graph

    with the intensity of the spectrum displayed along the third axis. This method gives the

    spectrum of an object at every location in it with up to nanometer resolution.

    Table of Contents

    Abstract

    Objective

    Background

    Design of Experiment

    Data Processing

    Conclusions

    Advancement

    Appendix A

    2

    3

    3

    8

    11

    16

    17

    19

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    Objective

    The purpose of the experiment is to construct a device to measure the spectrum of a two-

    dimensional object. The Fourier transform imaging spectrometer previously constructed

    by Eric Sztanko was modified and extended from a proof of concept to the point where

    the spectrum of a high-intensity multi wavelength object may be measured.

    Background

    Michelson interferometry is a method for measuring the spectrum of a single source. A

    basic Michelson interferometer can be seen in figure 1.

    Figure 1: The object beam goes through the beam splitter and the amplitude gets halved in each arm(graphs on L1 and L2), and then recombines. Constructive and destructive interference result at the imageplane (the two graphs next to the camera represent constructive and destructive interference).

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    It is often necessary or desirable to measure the spectrum of every pixel in a scene

    simultaneously. The way a Fourier transform imaging spectrometer (FTIS) works is by

    capturing the fringe patterns created by the source going through the Michelson

    interferometer. As M2 moves, the fringe pattern move (thus a single pixel locations gray

    value oscillates from light to dark) at a speed proportional to the motors movement, the

    wavelength of the fringe pattern can be calculated if the step size of the motor is known.

    As the FTIS captures more images, a longer “window” records more oscillations giving a

    better resolution (resolution is discussed later). Taking the Fourier transform of the

    oscillations (also called interferogram) calculates the frequencies present in the

    interferogram. The frequencies are then turned into their corresponding wavelengths and

    the spectrum of the source is calculated. The Fourier transform calculates the frequencies

    present in the signal. When a multicolor light is used, the wavelengths will overlap

    creating a different fringe pattern than a single wavelength fringe pattern creates.

    Sinusoids add according to equation 1.

    cos(k1z - w1t) + cos(k2z - w2t) = 2 ⋅ cos(k1 - k2

    2⋅ z) ⋅ cos( k1 + k2

    2⋅ z - wt) (1)

    As can be seen in Figure 1, the beam splitter divides the amplitude of the light

    into (often equal) parts. The beams that travel paths L1 and L2 (path lengths may be

    different) before being recombined at the beam splitter. If the relative path lengths differ,

    then fringe patterns are produced by constructive and destructive interference. Mirror M2

    on the motorized stage is set to move in the longitudinal direction (left and right in Figure

    1). The CCD camera captures images of the interference pattern at preset time intervals

    as M2 is moved. The change in the relative optical path lengths as M2 is moved produces

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    different interference patterns. The ensemble of recorded interferograms forms an

    “interferogram cube” f(x,y,t). If zµt, then f(x,y,z) may be inferred. Each captured image

    is “stacked” (Figure 2) to make an image cube, f(x,y,t).

    Figure 2: Image “cube,” the number of samples represents the time as the motor takes the images, thenthe x and y coordinate of the image is shown.

    The gray value of a specific pixel in every layer in the interferogram cube (figure 2) is

    the interferogram of that specific scene pixel, and is the Fourier transform (FT) of the

    spectrum. The Fourier transform of the interferogram is the spectrum of the object as can

    be seen in figure 3.

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    Figure 3: The single pixel location of every image in the cube graphed, then the Fourier transform of thegraph is taken to find the frequencies present.

    An interferogram is the oscillations caused by the wavelength of the source.

    Figure 3 is a nice sinusoid because that is from a single wavelength laser. Since the

    interferogram represents the signal from the source, the Fourier transform represents the

    frequencies present from the source.

    Use of an interferometer (instead of a spectrometer) benefits from “Fellgett’s

    Advantage” (also known as the multiplex advantage) where there is an increase in the

    accuracy of interferometry over spectrometry by a factor of (N/2)1/2, where N is the

    number of samples taken. Fellgett’s advantage is only true if all other errors are the same

    for the interferometer and spectrometer. (Thorne, 1989). Finding the spectrum of a scene

    by interferometry is more computationally intensive than finding the spectrum of a single

    source from a spectrometer because the Fourier transform of each interferogram must be

    calculated, while a spectrometer finds the spectrum directly

    Two types of interferograms that can be made with this apparatus are a one-sided

    and two-sided interferogram. The advantages of using a two-sided interferogram are that

    the zero point distance (ZPD) does not have to be exact because the interferogram is

    symmetrical. This means that there will not be phase errors due to an inaccurate ZPD.

    The other benefits are that thermal or electronic drift will not affect the results, and if the

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    alignment of the interferometer is lost, the interferogram will not be symmetric, thus it

    can be seen immediately if the experiment has to be redone. The disadvantage of using a

    two-sided interferogram is that the maximum optical path difference (OPD) is halved and

    hence, the resolution is reduced. (Bell, 1972). Due to the motor that is available, a two-

    sided interferogram will be used and doubling the number of images in the image cube

    will solve the loss of resolution.

    One limitation of the resolution is the amount of oscillations that are recorded (the length

    of the RECT function). The longer the total distance L2-L1, the better the spectral

    resolution, i.e., wavelengths that are very close together are more easily resolved. One

    method to reduce noise, take longer exposures, that is usually employed cannot be used

    because of limitations in the performance of the stepper motor. The minimum step size

    that the manufacturer says the motor can do with precision is 200nm, which corresponds

    to an optical path difference (OPD) of 400nm. Therefore, the available sampling interval

    would let the spectrometer resolve wavelengths of up to 800nm due to the nyquest

    frequency. To bypass this problem, the motor is sub stepped to the manufacturers

    specifications, this decreases the precision in the motor movements. Another problem is

    that the motor drifts with respect to time. The motor was found to drift at an almost

    constant velocity with minor variations that do not increase as time increases but seems to

    be related to a periodic pattern. The average velocity is about 3.6nm/sec. The graph of the

    velocity of the motor when power was given to the motor, but no move command was

    given can be seen in appendix A. The velocity can be determined because the signal is

    from the reference beam, thus the peak-to-peak distance is 632.8 nm and each interval is

    one second apart.

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    Therefore, experiments that require long times to complete are less accurate. The

    exposure time of the CCD must be relatively short so that the fringes do not move

    significantly during the exposure. This required that the object be sufficiently bright to

    ensure an adequate signal-to-noise ratio.

    The ultimate goal of the experiment is to have the object beam of the spectrometer

    a white-light (tungsten) source because produces the full visual spectrum. However due

    to the fact that the spectrometer acts like a bandpass filter (in the wavelengths ranging

    from 400-700 nm), the coherence length of a visual fringe pattern decreases as the width

    of a bandpass filter increases. A RECT tunrs into a Sinc function in Fourier space, as the

    RECT gets longer, the Sinc gets narrower. At a RECT of infinite length, the Sinc turns

    into a delta function. This means that the coherence length of a white-light source is

    small, it is approximately 1 micron.

    Experimental Designs and Methods

    Part One: Designing the Experiment

    The original design with a single source was deficient because of the inaccuracies of the

    motor. It was found that the movements were not repeatable, thus the original concept of

    creating an index that could be referred to for motor step size was not possible. The

    solution used is to calibrate the system during every experimental run. The system was

    calibrated by adding a second source that acts as a reference beam at a known

    wavelength, 632.8nm for a red HeNe laser. ReferenceBeam

    Object Beam

    CollimatingLens

    Mirror onmotor

    Beamsplitter

    Stationarymirrors

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    Figure 4:The experimental setup with the reference beam and object beam

    Both reference and object beams reflect from the moving mirror and are incident on the

    CCD array at the same time during the same run. This removes the position error from

    the calculation. The object beam is calibrated using the signal error from the reference

    beam. The only apparatus traversed by the beams that are not identical are the stationary

    beam splitters and mirrors. Since the positions are constant, they contribute no additional

    position errors.

    To decrease the size of the images that were taken, the CCD array had to be

    binned. Without binning, each image was approximately 2 MBytes, with binning (4

    pixels x 4 pixels binned down to1 pixel), the size went down to about 125 kBytes. Then

    with cropping part of the array, the size of the image was further decreased to 77 kBytes.

    With the approximately 8000 images that are needed for nanometer resolution, the

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    equation to get the resolution of this system from the number of images in the cube, as

    can be seen in figure 7, is

    7436.7*(#images)-1.0227 (1)

    Thus with a depth of 8000 images, a 2 MByte size image would come to about 16

    GBytes worth of data for a single experimental run. That is just not practical, by binning

    it down, the size for a run was about 600 MBytes.

    Figure 5: The smaller pixels on the left diagram are grouped to adjacent pixels making them act as onesingle larger pixel that is shown on the right.

    The object that was used for the final result was a four-quadrant color square with

    red, green, blue, and yellow quarters. It was printed on a transparency and placed

    between the collimating lens and beam splitter. The object can be seen in figure 6.

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    Figure 6: The four-color object that the experiment was conducted with. The object beam illuminated theobject (printed on a transparency) and the resulting fringe patterns were recorded. From upper left cornergoing in clockwise order: green, red, yellow, and blue.

    Part Two: Data Processing

    A simple percent error method is used to find the error of the reference source. The step

    size of the motor must be known to determine the distance of each data point. Equation 2

    shows how to find the step size.

    (2)

    Where lReference is known and Period(# images) is the number of images in the image cube

    that make up one full period of the reference beam. To try and reduce the amount of

    error, the length of every period was found and averaged together to try and minimize the

    effects of the drift and off imprecise stepping. Next, equation 3 calculates the resolution

    of the system, this tells the how small of a difference in frequencies can be found.

    (3)

    Dx = lReference(nm)Period(# images)

    Dn = 1N ⋅ Dx

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    As can be seen, as N (the depth of the interferogram cube) increases, Dn decreases, thus

    better resolution. The actual frequency is then calculated by multiplying change in

    frequency above by the k index (the location on the frequency axis) in the frequency

    domain as seen in equation 4.

    (4)

    The wavelength is then found by equation 5. (5)

    n has units of nm-1, thus the inverse is nm, which is the wavelength.

    The percent error of the reference beam is then calculated using equation 6.

    (6)

    Then using the error of the reference beam, the wavelengths originally calculated for the

    object beam are then corrected by rearranging equation 6 to get equation 7.

    (7)

    The results that were calculated by this method were either very close (within one or two

    nanometers) or dead on. The only wavelengths used to test this were the same (632.8

    nm), and a green HeNe with wavelengths at 543.5 and 594.1 nm. The relationship

    between the size of the image cube (depth, proportional to number of images) and

    resolution can be seen in figure 7.

    n = k ⋅ Dn

    l =1n

    % error =lReference - lexperimental

    lReference⋅100

    lcorrected =-100 ⋅ lexperimental% error -100

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    Figure 7: The relationship between the depth of the image cube and the resolution the system will have(at 50 nm step size intervals)

    Figure 7 shows that approximately 8000 images were needed in this setup to obtain a

    spectral resolution of 1nm where the average OPD was fifty nanometers. Thus, a

    translation distance of approximately 400 mm was necessary to obtain sufficient

    resolution.

    To find the spectrum of a two-dimensional object, the Fourier transform of each

    interferogram was evaluated at each pixel location in the image.

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    Figure 8: The diagram shows how the object relates to the interferogram, and then how the interferogramrelates to the spectrum of the signal visualized in a two-dimensional graph.

    For visualization purposes, the spectrum is separated into three graphs,

    blue (400 £ l £ 500 nm), green (501 £ l £ 600 nm), and red (601 £ l £ 700 nm). The

    spectrum could be displayed in any number of ways if a specific wavelength or band of

    wavelengths was desired to be observed by making minor changes in the program. The

    three figures (9-11) show the presence of a signal in the lower right corner, this is noise

    of unknown source. Figure 9 shows no signal in the blue region, as expected. The only

    signal in figure11 is upper left and is due to the reference beam. Figure 10 shows a

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    pattern that correlates to the object. This noise in figure 10 and 11 could be attributed to

    stray light from reflections in the optics.

    Figure 9: Blue graph (400-500 nm) Figure 10: Green graph (501-600 nm)

    Figure 11: Red graph (600-700 nm)

    The reason why the only detected signal is in the green region is because the object was

    illuminated by a two-color laser (green and yellow), so all wavelengths will be in the

    green spectrum (501-600 nm). The target attenuated the amount of green light. As can be

    seen in figure 11, only a small segment of the reference beam is incident upon the image

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    plane. However a space (approximately five millimeters in this experiment) is needed

    between the reference and object beams so that scattered light will not interfere with each

    other. Any signal detected in the “dead area” can be attributed to stray light, as can be

    seen in figure 10.

    It should be noted that figures 9-11 have a resolution of about seven nanometers

    because the interferogram cube had a depth of 1024 images. In the current form, the

    thickness of the a two-dimensional interferogram cube cannot have more than a depth of

    1024 images because the computer system (Sun Blade 1000 was used) cannot create

    arrays large enough for a depth of 8000 (8192 actually used so that a fast Fourier

    transform could be applied). The one-dimensional case can calculate image cubes with

    depths of 8192 giving resolutions of under a nanometer.

    Conclusions

    It was found that the correct spectrum of an object could be found using a sub-standard

    stepper motor (one that does not have repeatability at such small step sizes). The only

    negative aspect of adding the second beam is that the size of the object that can be

    imaged has to be decreased so that both beams can fit into the image plane (CCD array).

    The addition of the reference beam to calibrate the apparatus during every

    experimental run solved the problem of motor drift. It was found that “windowing”

    actually makes the results worse when there are numerous sinusoids in a sample. Since

    there are so many sinusoids toward the edge where the value goes either to zero, or close

    to zero (depending on the type of windowing technique that is used), it fails to read some

    of the oscillations, thus gives a false frequency. To try and decrease the prevalence of

    noise from the results, a thresholding method was used. When the data was processed,

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    only signals that had a high enough intensity were used, through refining the data

    processing, it is probably possible to use the noise from the reference beam to subtract

    from the object beam. This is probably possible because the noise is systemic noise, thus

    both signals should have the same noise.

    Advancement

    The experiments to date have demonstrated the successful implementation of the imaging

    spectrometer. However, several aspects exist that could be improved during further

    research. The program used to process the data could be upgraded, e.g. to support larger

    arrays. The program can be changed by performing the calculations on an entire row or

    column at once, continuing until it goes through the entire two-dimensional image.

    Another way would be to lower the threshold that was being used, the way that might

    done would be to find all of the spectral bands in the reference beam other than the

    reference wavelength and subtract them from the object wavelengths.

    To determine the full spectrum of an object, a white-light source is necessary. A

    tungsten light is usually used for this because its spectral curve lies in the visible region.

    The problem with a white-light fringe pattern is that it has a coherence length of only

    about one micron. For nanometer resolution in this system, the minimum OPD is

    approximately 400 microns. A possible way to bypass this problem would be to make the

    mirror go back and forth every two 250 microns (OPD = 500 microns), thus keeping the

    fringe pattern coherent. If the OPD goes past 1 micron then the fringe pattern will

    disappear making it impossible to find the spectrum. That will most likely cause a lot of

    other frequencies in the reference and object beams, but like mentioned above, if the

    added frequency is systemic, then hopefully it will be the same for the reference and

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    object beams, thus using the same method aforementioned, find the superfluous

    frequencies in the reference beam, then subtract them from the object.

    If the above suggestions can be implemented, a full functioning Fourier transform

    spectrometer will be a reality. The experiment up to this point has created a foundation

    that solved some problems that were encountered, but others need to be overcome to

    bring it to fruition.

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    Appendix A

    Drift Velocity of Motor

    Power applied to the motor when no movement command was issued. The drift velocity

    of the motor seems to be fairly constant.

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    Resources

    Albergotti, J. C. “Fourier Transform Spectroscopy Using a Michelson Interferometer.”American Journal of Physics Vol 40 (1972): 1070-1076.

    Bell, Robert J. Introductory Fourier Transform Spectroscopy. New York, NY: Academic Press, 1972.

    Berkey, Donald Kieth. “An Undergraduate Experiment in Fourier-TransformSpectrometry.” American Journal of Physics Vol 40 (1972): 267-270.

    Dorrer, C., N. Belabas, J-P. Likforman, and M. Joffre. “Experimental implementation ofFourier-transform spectral interferometry and its application to the study ofspectrometers.” Applied Physics B, Lasers and Optics Vol B70 (2000): S99-S107.

    Gingras, D.J. “Spectrum Estimation of FT-IR Data with Sampling Errors.” SPIEVol. 1145 (1989): 181-185.

    Mertz, Lawrence. Transformations in Optics. New York: John Wiley & Sons, 1965.

    Thorne, Anne. “High resolution Fourier transform spectroscopy in the ultra-violet.” SPIEVol. 1145 (1989): 43-47.