enterprise & scientific data interoperability using linked data at the health datapalooza 2014
TRANSCRIPT
David Wood, PhD
TutorialEnterprise and Scientific!Data Interoperability!using Linked Data
The Bipolar Enterprise
<HTML>
Enterprise Data Documents
Today’s Data on the Web
Linked Data on the Web
my data
collector
collected by
measurement
Michael
first name
Hausenblaslast name
Person
a
a measurement
2011-01-01date
0
valueunits of measure
degrees Centigrade
...
Galway Airport
collected at
or
Dr. Chris Welty
“Semantic Technology is not an end in itself, it is a means to an end, a set of tools and techniques for supporting
modern data analytics. It goes alongside other essential technologies
like machine learning, databases, information retrieval, etc.”
IBM Watson Team
<HTML>
Enterprise Data Documents
Read/ Write
Point to, include, describe
Callimachus Enterprise
<HTML>
Enterprise Data Documents
Read/ Write
Point to, include, describe
Callimachus Enterprise
The easiest way to access, integrate and visualize public and private data from a variety of sources.
Data-driven Web applications
Callimachus Enterprise
Open Source Licensed
Community supported Commercial support
in-browser development, deployment, backups
Linked Data publication
User profiles, social sharing
Document, app management
OpenAnnotation support
External datasources
Shared deployments, realms
Enterprise management
CallimachusCallimachus Enterprise
M A N N I N G
David WoodMarsha ZaidmanLuke RuthWITH Michael Hausenblas
FOREWORD BY Tim Berners-Lee
Structured data on the Web
2 Door P
rizes
orCallimachusCallimachus Enterprise
GeneratedHTML Page
GeneratedHTML Form
or
Callimachus TemplateXHTML+RDFa
endpoint(s)named query
REST APIOWL Class
AJAX
XProc pipeline
Callimachus TemplateXHTML+RDFa
named query OWL ClassXProc pipeline
Data
Web pages
Callimachus TemplateXHTML+RDFa
named query OWL ClassXProc pipeline
Callimachus TemplateXHTML+RDFa
named query OWL ClassXProc pipeline
Callimachus TemplateXHTML+RDFa
named query OWL ClassXProc pipeline
orCallimachusCallimachus Enterprise
GeneratedHTML Page
GeneratedHTML Form
or
Callimachus TemplateXHTML+RDFa
endpoint(s)named query
REST APIOWL Class
AJAX
XProc pipeline
Getting Started
Get Callimachus 1.3.2CallimachusProject.org
3RoundStones.com
User Invitation
• Your custom J2EE authentication here!
You can get to your profile from anywhere by selecting the “My Documents” option from the main menu.
David Wood, PhD
TutorialEnterprise and Scientific!Data Interoperability!using Linked Data
Bonobos!
Bonobos!
Bonobos!
Bonobos!
@prefix dbpedia: <http://dbpedia.org/resource/> . @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . !<Mary> a dbpedia:Bonobo ; rdfs:label "Mary" ; rdfs:comment "Mary is a pleasant bonobo.” .
Bonobos!
Mary
dbpedia:Bonobo
a
Mary
rdfs:label
Mary is a pleasant bonobo.
rdfs:comment
David Wood, PhD
TutorialEnterprise and Scientific!Data Interoperability!using Linked Data
Biomarkerpedia
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix bmterms: <http://biomarkerpedia.org/rdf/2013/schema/1.0/schema.ttl#> . !<her2> a bmterms:Biomarker, bmterms:Protein ; rdfs:label "HER2" ; bmterms:related <erbb2> ; bmterms:therpeuticArea bmareas:oncology ; bmterms:therpeuticArea bmareas:breast_cancer ; bmterms:drug drug:Ado-Trastuzumab-Emtansine ; bmterms:device device:INFORM-HER2-Dual-ISH-DNA-Probe-cocktail-assay ; bmterms:cro bmo:wuxiapptec .
Biomarkerpedia
Biomarkerpedia
her2
bmterms:Biomarker
a
HER2
rdfs:label
bmterms:Protein
aERBB2
bmterms:related
bmterms:oncology
bmterms:therapeuticArea
bmterms:breast_cancer
bmterms:therapeuticArea
bmterms:device
INFORM HER2 Dual ISH DNA Probe cocktail assay
rdfs:label
bmterms:cro
Wuxi AppTec
rdfs:label
David Wood, PhD
TutorialEnterprise and Scientific!Data Interoperability!using Linked Data