dr. albert rovira - diagnostic view of porcine epidemic diarrhea virus

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Porcine Epidemic Diarrhea Virus (PEDV) Albert Rovira, DVM, MS, PhD Veterinary Diagnostic Laboratory

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Diagnostic View of Porcine Epidemic Diarrhea Virus - Dr. Albert Rovira, Assistant Clinical Professor, Veterinary Population Medicine, College of Veterinary Medicine, University of Minnesota, from the 2013 Allen D. Leman Swine Conference, September 14-17, 2013, St. Paul, Minnesota, USA. More presentations at http://www.swinecast.com/2013-leman-swine-conference-material

TRANSCRIPT

Page 1: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Porcine Epidemic Diarrhea Virus (PEDV)

Albert Rovira, DVM, MS, PhD Veterinary Diagnostic Laboratory

Page 2: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Porcine Epidemic Diarrhea

• PED is caused by a coronavirus (PEDV)

• PEDV causes diarrhea and vomiting in swine of all ages

• High mortality in piglets under 2 weeks of age

Page 3: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Porcine Epidemic Diarrhea

• PEDV first described in Europe in the 70s

• PED currently not a problem in Europe

• PED is an important problem in Asia

Page 4: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Porcine Epidemic Diarrhea

• PEDV replicates in the epithelial cells of the small intestine

• Incubation period: 1-2 days

• Shedding in feces: 7-11 days

• Immune response: mucosal and serological: serum antibodies at 7-14 dpi

Page 5: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Source: AASV

Page 6: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Diagnostics

• Same basic guidelines of diarrhea diagnostic workups

• Select live, acutely affected pigs with diarrhea

• Perform necropsy and collect samples within 15 minutes of euthanasia

• Gross lesions: liquid intestinal contents, thin-walled intestines?

Page 7: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Sample collection

• Small intestine:

– 6 sections representing the whole length of the small intestine

– 10 cm segments fresh and 2 cm segments fixed

• Other tissues for a complete workup and to rule out differential diagnoses

– Stomach, colon, tonsil, lymph node, lung, heart, spleen, liver, kidney -- fresh and fixed

Page 8: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Other sample types

• Feces

• Fecal swabs

• Oral fluids

• Feedback material

• Environmental swabs

• Feed

Page 9: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

PEDV diagnostic tests• Virus isolation:

– Difficult to grow in vitro

• Electron Microscopy: – low sensitivity

• Histopathology:

– atrophic enteritis

– same as TGEV and Rotavirus

• Real time PCR:

– sensitive and specific

– available in US laboratories

Page 10: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus
Page 11: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus
Page 12: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

PEDV diagnostic tests

• IHC, ISH:

– less sensitive than PCR

– good for research, retrospective studies

• Serology:

– Indicative of previous exposure

– IFA/IPMA: will be available first

– ELISA: available in Asia, under development in the US

Page 13: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Testing protocols

• Diagnostic investigation in farms with diarrhea:

– Tissues from acutely affected pigs

– Fecal samples: 15 samples in pools of 5 (3 PCRs)

– Oral fluid samples from 2 pens

• Monitoring the status of farms with no diarrhea:

– Fecal samples: 15 samples in pools of 5

– 2 oral fluid samples

– 10-15 serum samples for serology

Page 14: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Testing protocols

• Monitoring the status of positive sow farms after herd

closure

– Fecal samples: 30 samples in pools of 5

– Serology on sentinels?

• Example:

– 8 wks after clinical signs: 10/10 positives

– 12 wks after clinical signs: 7/30 positives

– 14 wks after clinical signs: 1/30 positives

Page 15: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

First cases observed in May

0

5

10

15

20

25

30

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Negative

POSITIVE

Page 16: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

>100 positive submissions in 2 months

0

100

200

300

400

500

6001

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Negative

POSITIVE

Page 17: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Were we ready for a foreign animal

disease outbreak?

• VDLs:

– Early identification of the disease

– PCR test available within days

– Real-Time PCR test available within 2 wk

(results in 24h)

• Immediate involvement of Universities,

USDA-APHIS, AASV, NPB

Page 18: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Sharing of lab results to obtain a

national monitoring system for PED

• U of Minnesota and ISU combined results -

database maintained at ISU

• Combined database transferred to USDA-APHIS–

NAHLN

• Weekly summary

• Collaboration Universities–USDA–AASV-NPB

Page 19: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

MN VDL + ISU + SDSU + KSU + OHADDL

Page 20: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Distribution of PED positives

Courtesy of Dr. Dane Goede

Page 21: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Limitations of current national

monitoring system for PED

• Detail of the data: state, farm type, sample type,

result

• Quality of the data: missing/wrong data

• Quality of the data: reported by submission, not by

premise

• Include premises ID in submission form and give

permission to VDLs to share that info with national

database

Page 22: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Where did PED come from?

• Asia, Europe,…???

• How did it get here?

– Pigs

– People

– Feed

– Wildlife,…

• U of M, AAVLD and USDA-CEAH:

epidemiological study to answer these

questions

Page 23: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Courtesy of Doug Marthaler

Sequencing of

Spike gene

Page 24: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Did it come from feed products?

• Some feed ingredients tested positive by PCR

• We performed a bioassay to figure out is it was live

virus

• 3 pigs inoculated with PBS (negative controls)

• 3 pigs inoculated with PCR-positive feed products

(bioassay)

• 3 pigs inoculated with PCR-positive fecal samples

(positive controls)

Page 25: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus

Results bioassay

Vomit Diarrhea PED PCR Atrophic

enteritis

NEG Control No 1/3 0/3 0/3

Bioassay No No 0/3 0/3

POS Control YES 2/3 3/3 3/3

CONCLUSION: feed can contain PEDV nucleic acid

that is not infectious but can test positive by PCR

Page 26: Dr. Albert Rovira - Diagnostic View of Porcine Epidemic Diarrhea Virus